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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011359 ID=TCONS_00011359|Name=TCONS_00011359|organism=Clytia hemisphaerica|type=transcript|length=2624bpRun BLAST on NCBI protein sequence of TCONS_00011359-protein >TCONS_00011359-protein ID=TCONS_00011359-protein|Name=TCONS_00011359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp MKEEKGTVGSRQSIHHKNGGHSNGTNDEPVSFFWKSHTISVLTTLLLLLCRun BLAST on NCBI transcript from alignment at sc0000127:440103..451108+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011359 ID=TCONS_00011359|Name=TCONS_00011359|organism=Clytia hemisphaerica|type=transcript|length=11006bp|location=Sequence derived from alignment at sc0000127:440103..451108+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000127:440103..451108+ >TCONS_00011359 ID=TCONS_00011359|Name=TCONS_00011359|organism=Clytia hemisphaerica|type=CDS|length=12870bp|location=Sequence derived from alignment at sc0000127:440103..451108+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011359 vs. Swiss-Prot (Human)
Match: PTSS2 (Phosphatidylserine synthase 2 OS=Homo sapiens GN=PTDSS2 PE=1 SV=1) HSP 1 Score: 430.254 bits (1105), Expect = 1.407e-140 Identity = 215/409 (52.57%), Postives = 288/409 (70.42%), Query Frame = 2
Query: 383 NMKEEKGTVGSRQSIHHKNGGHSNGT---NDEPVSFFWKSHTISVXXXXXXXXXXXXXXEDQSEHSSEYNAKRGVLACIMVFLAFGVTQAKDGPFLRPHPVLWRFILCCSVIYELCLIFLLFQTAKDARRWMSHFDPKLGVQLPEHDYGGSCLLYDENNTENPWHNFWDKIDGFVPAHLFGWWIKTLILRDYWLTFLLSILFEILEYSLQHQLPNFSECWWDHWILDFIICNGGGILLGMFTLQHLEMKKYHWRSLWSIPTYSGKFYRFMGQFTPYSWRKFSWCATYSLKRWLAVLGLIVMFSLCELNVFYLKTALWIPPEHYTVLGRLLFVSFLGLVSIRECYDYLNDSAC-KKFGQQSWIFCLIIITESLIAVKFLWTTVTLPPPQHIIILWTCIAIGLVLYTCWLF 1597
+++E + Q+ G S + +D +FFW++HT++VL L L Y+T LE+ + ++ YN KRG++A I+VFL FGVTQAKDGPF RPHP WRF LC SV+YEL LIF+LFQT +D R+++ + DPKLGV LPE DYGG+CL+YD +N +P+HN WDK+DGFVPAH GW++KTL++RD+W+ ++S++FE LEYSL+HQLPNFSECWWDHWI+D ++CNG GI GM TL+ L +K Y W+ LW+IPTY GK R QFTPYSW +F W SL+RWLAV G+I++F L ELN FYLK LW+PPEHY VL RL+F +G V++RE YD+++D KK G Q+W+ I TE LI VK+ T+TL P +I WT ++ + +T W F
Sbjct: 24 SLEEPPDGPSAGQATGPGEGRRSTESEVYDDGTNTFFWRAHTLTVLFILTCTLGYVTLLEETPQDTA-YNTKRGIVASILVFLCFGVTQAKDGPFSRPHPAYWRFWLCVSVVYELFLIFILFQTVQDGRQFLKYVDPKLGVPLPERDYGGNCLIYDPDNETDPFHNIWDKLDGFVPAHFLGWYLKTLMIRDWWMCMIISVMFEFLEYSLEHQLPNFSECWWDHWIMDVLVCNGLGIYCGMKTLEWLSLKTYKWQGLWNIPTYKGKMKRIAFQFTPYSWVRFEWKPASSLRRWLAVCGIILVFLLAELNTFYLKFVLWMPPEHYLVLLRLVFFVNVGGVAMREIYDFMDDPKPHKKLGPQAWLVAAITATELLIVVKYDPHTLTLSLPFYISQCWTLGSVLALTWTVWRF 431 The following BLAST results are available for this feature:
BLAST of TCONS_00011359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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