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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011358 ID=TCONS_00011358|Name=TCONS_00011358|organism=Clytia hemisphaerica|type=transcript|length=2575bp
CCTGCATGGAAACTAACTTTCAAACTACAAAGATGAAATACTGATCAGAG
TGGTAGCTGATTTGTGCAATGCATATCGTAGTGTAAATACAATCACAAGA
TGCTAGCAGCACCAGCACGCTGTATCCCATCCGTCACATTGAGATCGTTC
ATTCTCCATTCCATCATCTTTGCATGGTGCTCGTTCGGTATTTACAAAGA
CCAAACTGTTTACATTATACCAAAATTCAAAGAATATGGTGGTCGTGCCC
AGTTTTTGACCATGATTACTGCCTACGTATGTCTGGTTGCCTATGGTATT
GCTTTCGTGGTTGATTTGATTCAAATGGTGACCGGATTGCTGGAGGATAA
AAAAATTACCACAAATGGTTATGAAGAGCATCGATCCATTCTCATATCTT
TACGAGACGATTTGGTATCATTTTGGGCGTTCACTTTATCTGTTTTTGTC
GTTCTTATGTATTGGTCACTATGCTATATTGATCTGGATGGCGTCCACCC
ACTTGAGAGCCGTAAAATCACGCCCTTGTTTGGGTGGTATAACCAGTATC
TACATACCGTCCCAATTTTCAACGCCTTTTTATTGATTACCAACGTCAAT
TATGGTTATGGTGGaatcaaaaaagtcattttcaatATTATTCTTCTCGG
TTCCGGCTATTTCTTTTGGATCTCACATTTAGCGCAAGTGAAAGGTTACT
GGGTGTATGGTTTCATGGATAAATTGAATAAAGTTCAATTTGGGGCGTTC
GTTGTGGCGTGTCATTTGATCTTTTTTCTTGTGTATGCTATCGGACGAAA
AGTGTCTACTTCGTGTTGGAGTCAAGAATATAAAGAAAGAGTTATCATCG
AAAATGAACGCAAAGGATTGTAggaatttttaaagttttttttcaaatat
cgaaTTTAAATTTTCACGGATCATAGTATTTgcttcaaatttaatttatg
aCGAGTGGACTCTTTCATAAACCTCTGTGACAAATTAAAGATGAGATTTA
AAATGGAAGAGTACATTGCATATGCAAATAAGTATACTTTAAAGTTTTAt
attcttaaaggttttgttttcacataagtgtttccgtttcatatcagaca
catgtttcatatcaggacagtgtctcctTATTgttttgttatattgtgct
gacataagcaaaaaatgtctttcttttcctctttctgaccaatcttgctc
cacatccgtacaagttcaatatcaaaaagcttgtaaattaaaattgatga
gtaagcaaacggtatcactcttatttaaaaacaaaacctttaaaggggGG
TAGATAGCCATCTAAACTGTGAATTTGAAAGTATAAAATTAAAGTAGAAG
TcatctaaagtctgtctcaaaataatctgCAGGGgagacaaaatagataa
aatccgAATTAAATAGCGCTTTCGTGCTTGTTGAAACGATAttcaggagt
ggaatattatcaaaaaattaagatgaaacaaagatgaaaaaaaaacgaag
taaaaacttctttaaaaaattcttaattaaAACCATCTCAAATGATAGAA
TTTAGAACGTCGTCACtgcgaagaaaaatatattcaacCGAAATCGActt
taaaaatcataaaaaaaaaacaagaaacagAGCCCATTTTATAGTCAACT
GGACAAAAGTTTTAAGCTGcatttttgactgaataaatatttttcgaaat
tcttttcacagtgatgacattctaagattgaaaattttttcatgagAATG
GTCATCATTTTTACAATTCcccaaaaaactgatttttttattcatttctt
tTCGTCtttattttaagtatttttttcaaatccttcccatttgataatat
ttcactcctttaaaggtttatttttacataagtgctcccatttcatatca
gacacatatttcatatcagggcagtgtcttgctattgttatagtatgctg
atataagcaaaataaatgtttttctttccctctttctgtccaatcttgct
ccacatccgtgtgtcaatccaatgttaaaaagcttgtaaattaaaaatga
tgagtaagcaaacgatatcactcttatttaaaaacaaatcctTTAATTCA
ACAAGCACGAAAGCAATTCGAATTATCAAACGTTACAACATCTTTATCCT
TCACGCAGATAATAGTGTTTTCCTATGTTACATATTAAAACTGATGGTTT
TCGTCGTAGAGTCATCCATCACAATCTTTTGaaatgtattttttaaattg
tactctatacagcacctgaccccgagaatgtagtaaaccccgagaatgta
ggtttctcattttttagcattgtagccctaacgatagttcaacttcataa
aaatttgtttcagaGCACACTGTTACATGTTACTGATTATTTCTGgacag
aaaattttaacttgaattaattttttccaacgaaaatctgaatggaagtt
gattggatattaCCCGAactgagacattttttaaataaatcctctctaaa
tcgaaatctattggaataaagttatgatgatagggtattttcttagtcct
aatgaactaaggaaatggggaaaat Run BLAST on NCBI protein sequence of TCONS_00011358-protein >TCONS_00011358-protein ID=TCONS_00011358-protein|Name=TCONS_00011358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MLAAPARCIPSVTLRSFILHSIIFAWCSFGIYKDQTVYIIPKFKEYGGRA
QFLTMITAYVCLVAYGIAFVVDLIQMVTGLLEDKKITTNGYEEHRSILIS
LRDDLVSFWAFTLSVFVVLMYWSLCYIDLDGVHPLESRKITPLFGWYNQY
LHTVPIFNAFLLITNVNYGYGGIKKVIFNIILLGSGYFFWISHLAQVKGY
WVYGFMDKLNKVQFGAFVVACHLIFFLVYAIGRKVSTSCWSQEYKERVII
ENERKGL Run BLAST on NCBI transcript from alignment at sc0000127:380394..383750+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011358 ID=TCONS_00011358|Name=TCONS_00011358|organism=Clytia hemisphaerica|type=transcript|length=3357bp|location=Sequence derived from alignment at sc0000127:380394..383750+ (Clytia hemisphaerica)
CCTGCATGGAAACTAACTTTCAAACTACAAAGATGAAATACTGATCAGAG
TGGTAGCTGATTTGTGCAATGCATATCGTAGGTAGTCTATACACTGCACT
AACAGTCTAACAGTCAAACAGTCTTTAGCCCTTTACTATCATACCATGTT
CATTAAAAAGTGCTTTTCataaaatacttttttgtggtCATGGTAATATA
ATGGAGATTGTCTTTTGTGATTTATGATAATGACATAGAGAGGAAGTTAA
AATGAGCTAGAGAACTGTAATTTGATGTGAAACtgcagagagagagagag
agagctgTGTATATCTGTATGGAGAATGTTTTTGATGAAACATGATGGTT
TTCTCTATAAAAATAGCGTTGTAATATGTTCTGTCGTTTTATAAGATAAT
TACAAGAGCAGTTTGCAGTTTGTTACTacatttttcaagcttttttaTTG
GAGAAATTTCACCATACCAGTTATGATTTTGTGTAATAAGACAATAATGG
GAAGAAGGGGGTTGAACTGAGTCTTCTAAATGTTTTTATCCAAAGAAAGT
CCGCCATATTACATAGGGTCACTTATTAGCGCCATCCACTCTGTCAAAAA
GCCATAAATGGCCACTGGGCTTCCCTCATGCTCGAATTATTAAAGTTTGA
CGTTTTACTAAGGACTGGACTACTATGGACGGAGCCTTTGGGTTGAACTT
CATGAACTAAAGACAAGTTCATGAGATAATTTAATAACTTCTTAAGGACT
TAAAATCTTTCAGAAACCATTAAACCATCCTACACATTATACAATTCTCT
TTATTAACAGTGTAAATACAATCACAAGATGCTAGCAGCACCAGCACGCT
GTATCCCATCCGTCACATTGAGATCGTTCATTCTCCATTCCATCATCTTT
GCATGGTGCTCGTTCGGTATTTACAAAGACCAAACTGTTTACATTATACC
AAAATTCAAAGAATATGGTGGTCGTGCCCAGTTTTTGACCATGATTACTG
CCTACGTATGTCTGGTTGCCTATGGTATTGCTTTCGTGGTTGATTTGATT
CAAATGGTGACCGGATTGCTGGAGGATAAAAAAATTACCACAAATGGTTA
TGAAGAGCATCGATCCATTCTCATATCTTTACGAGACGATTTGGTATCAT
TTTGGGCGTTCACTTTATCTGTTTTTGTCGTTCTTATGTATTGGTCACTA
TGCTATATTGATCTGGATGGCGTCCACCCACTTGAGAGCCGTAAAATCAC
GCCCTTGTTTGGGTGGTATAACCAGTATCTACATACCGTCCCAATTTTCA
ACGCCTTTTTATTGATTACCAACGTCAATTATGGTTATGGTGGaatcaaa
aaagtcattttcaatATTATTCTTCTCGGTTCCGGCTATTTCTTTTGGAT
CTCACATTTAGCGCAAGTGAAAGGTTACTGGGTGTATGGTTTCATGGATA
AATTGAATAAAGTTCAATTTGGGGCGTTCGTTGTGGCGTGTCATTTGATC
TTTTTTCTTGTGTATGCTATCGGACGAAAAGTGTCTACTTCGTGTTGGAG
TCAAGAATATAAAGAAAGAGTTATCATCGAAAATGAACGCAAAGGATTGT
AggaatttttaaagttttttttcaaatatcgaaTTTAAATTTTCACGGAT
CATAGTATTTgcttcaaatttaatttatgaCGAGTGGACTCTTTCATAAA
CCTCTGTGACAAATTAAAGATGAGATTTAAAATGGAAGAGTACATTGCAT
ATGCAAATAAGTATACTTTAAAGTTTTAtattcttaaaggttttgttttc
acataagtgtttccgtttcatatcagacacatgtttcatatcaggacagt
gtctcctTATTgttttgttatattgtgctgacataagcaaaaaatgtctt
tcttttcctctttctgaccaatcttgctccacatccgtacaagttcaata
tcaaaaagcttgtaaattaaaattgatgagtaagcaaacggtatcactct
tatttaaaaacaaaacctttaaaggggGGTAGATAGCCATCTAAACTGTG
AATTTGAAAGTATAAAATTAAAGTAGATTtactttaaaaatttctttaat
aaaaCCCTAATAACAACATAATTCCATACAAGTcatctaaagtctgtctc
aaaataatctgCAGGGgagacaaaatagataaaatccgAATTAAATAGCG
CTTTCGTGCTTGTTGAAACGATAttcaggagtggaatattatcaaaaaat
taagatgaaacaaagatgaaaaaaaaacgaagtaaaaacttctttaaaaa
attcttaattaaAACCATCTCAAATGATAGAATTTAGAACGTCGTCACtg
cgaagaaaaatatattcaacCGAAATCGActttaaaaatcataaaaaaaa
aacaagaaacagAGCCCATTTTATAGTCAACTGGACAAAAGTTTTAAGCT
Gcatttttgactgaataaatatttttcgaaattcttttcacagtgatgac
attctaagattgaaaattttttcatgagAATGGTCATCATTTTTACAATT
CcccaaaaaactgatttttttattcatttctttTCGTCtttattttaagt
atttttttcaaatccttcccatttgataatatttcactcctttaaaggtt
tatttttacataagtgctcccatttcatatcagacacatatttcatatca
gggcagtgtcttgctattgttatagtatgctgatataagcaaaataaatg
tttttctttccctctttctgtccaatcttgctccacatccgtgtgtcaat
ccaatgttaaaaagcttgtaaattaaaaatgatgagtaagcaaacgatat
cactcttatttaaaaacaaatcctTTAATTCAACAAGCACGAAAGCAATT
CGAATTATCAAACGTTACAACATCTTTATCCTTCACGCAGATAATAGTGT
TTTCCTATGTTACATATTAAAACTGATGGTTTTCGTCGTAGAGTCATCCA
TCACAATCTTTTGaaatgtattttttaaattgtactctatacagcacctg
accccgagaatgtagtaaaccccgagaatgtaggtttctcattttttagc
attgtagccctaacgatagttcaacttcataaaaatttgtttcagaGCAC
ACTGTTACATGTTACTGATTATTTCTGgacagaaaattttaacttgaatt
aattttttccaacgaaaatctgaatggaagttgattggatattaCCCGAa
ctgagacattttttaaataaatcctctctaaatcgaaatctattggaata
aagttatgatgatagggtattttcttagtcctaatgaactaaggaaatgg
ggaaaat Coding sequence (CDS) from alignment at sc0000127:380394..383750+ >TCONS_00011358 ID=TCONS_00011358|Name=TCONS_00011358|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000127:380394..383750+ (Clytia hemisphaerica)
ATGCTAGCAGCACCAGCACGCTGTATCCCATCCGTCACATTGAGATCGTT
CATTCTCCATTCCATCATCTTTGCATGGTGCTCGTTCGGTATTTACAAAG
ACCAAACTGTTTACATTATACCAAAATTCAAAGAATATGGTGGTCGTGCC
CAGTTTTTGACCATGATTACTGCCTACGTATGTCTGGTTGCCTATGGTAT
TGCTTTCGTGGTTGATTTGATTCAAATGGTGACCGGATTGCTGGAGGATA
AAAAAATTACCACAAATGGTTATGAAGAGCATCGATCCATTCTCATATCT
TTACGAGACGATTTGGTATCATTTTGGGCGTTCACTTTATCTGTTTTTGT
CGTTCTTATGTATTGGTCACTATGCTATATTGATCTGGATGGCGTCCACC
CACTTGAGAGCCGTAAAATCACGCCCTTGTTTGGGTGGTATAACCAGTAT
CTACATACCGTCCCAATTTTCAACGCCTTTTTATTGATTACCAACGTCAA
TTATGGTTATGGTGGaatcaaaaaagtcattttcaatATTATTCTTCTCG
GTTCCGGCTATTTCTTTTGGATCTCACATTTAGCGCAAGTGAAAGGTTAC
TGGGTGTATGGTTTCATGGATAAATTGAATAAAGTTCAATTTGGGGCGTT
CGTTGTGGCGTGTCATTTGATCTTTTTTCTTGTGTATGCTATCGGACGAA
AAGTGTCTACTTCGTGTTGGAGTCAAGAATATAAAGAAAGAGTTATCATC
GAAAATGAACGCAAAGGATTGTAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011358-exon-sc0000127-1491911889:380394..380474 | TCONS_00011358-exon-sc0000127-1491911889:380394..380474 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1510915933:380394..380474 | TCONS_00011358-exon-sc0000127-1510915933:380394..380474 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1575043694:380394..380474 | TCONS_00011358-exon-sc0000127-1575043694:380394..380474 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1491911889:381204..382469 | TCONS_00011358-exon-sc0000127-1491911889:381204..382469 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1510915933:381204..382469 | TCONS_00011358-exon-sc0000127-1510915933:381204..382469 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1575043694:381204..382469 | TCONS_00011358-exon-sc0000127-1575043694:381204..382469 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1491911889:382523..383750 | TCONS_00011358-exon-sc0000127-1491911889:382523..383750 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1510915933:382523..383750 | TCONS_00011358-exon-sc0000127-1510915933:382523..383750 | Clytia hemisphaerica | exon |
| TCONS_00011358-exon-sc0000127-1575043694:382523..383750 | TCONS_00011358-exon-sc0000127-1575043694:382523..383750 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000127 | supercontig | sc0000127:380394..383750 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006838 | Far-17a_AIG1 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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