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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011352 ID=TCONS_00011352|Name=TCONS_00011352|organism=Clytia hemisphaerica|type=transcript|length=4381bpRun BLAST on NCBI transcript from alignment at sc0000127:284528..306716+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011352 ID=TCONS_00011352|Name=TCONS_00011352|organism=Clytia hemisphaerica|type=transcript|length=22189bp|location=Sequence derived from alignment at sc0000127:284528..306716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011352 vs. Swiss-Prot (Human)
Match: CHKA (Choline kinase alpha OS=Homo sapiens GN=CHKA PE=1 SV=3) HSP 1 Score: 278.485 bits (711), Expect = 1.275e-81 Identity = 142/377 (37.67%), Postives = 221/377 (58.62%), Query Frame = 2
Query: 344 DEKVTETAFKQCKRCLGGTWAKMKPNQLTVTYVTGGMTNYLYLCSLPDDVITLENEPRKVLMRIYGEIVDLKQ--------------------RFYESIIFTVLSERNIGPKTYGVFYSGRIEEFYPYRTLVTQELKNPAIQKTIGERVAEFHCMKVPLNQEAQFIWENIEKFLSMILTVEFEDAEKQERLEAILQSFNFETEYIWMKSMLMNVKSPIVFCHNDVHEGNLIYVNDEIGPDDFDIRLIDFDYSSYNYRGFDIGNHFSEHLHEYS-EDFPDGVICTQENYPTREEQENFARSYLDTIQRMRVKVLTGEKDPLKYYCDYDAGSVDELLNEANRFALAANFYWAVWSIIQEKVSKISMNYLKHTEDRIVTY 1411
+ + A+ CK L G W ++ ++ ++ + GG++N L+ CSLPD TL +EPRKVL+R+YG I+ ++ ES++F +L+ER++GPK YG+F GR+E+F P R L T+EL P I I E++A FH MK+P N+E ++++ +EK+L +L ++F + + ++L +L S+N E ++S+L + SP+VFCHND EGN++ + + + LIDF+YSSYNYRGFDIGNHF E +++YS E +P YPT+++Q +F SYL Q + T EK +K +E+L E NRFALA++F W +WSI+Q K+S I Y+ + + R Y
Sbjct: 84 EPRTRRRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLL-SYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPF-FRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIK----------EEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMDYAQARFDAY 448 The following BLAST results are available for this feature:
BLAST of TCONS_00011352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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