TCONS_00011347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011347
Unique NameTCONS_00011347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011347 ID=TCONS_00011347|Name=TCONS_00011347|organism=Clytia hemisphaerica|type=transcript|length=874bp
AATAGATTAAAATCATATAAACAGATACATGATAGATCATTGATGTTTGA
ATTGATCGAATTTCTCGAACAAGATCTTTACAAAAATGGGTTCTTCCTTG
GAAAATGACATGGTGTGTCTCTTAGAGTCAATACAATGCCTTGGAAATGA
CAAAAGCCAGATTATCCAAGCACTGGAGCATTTAGCTGAaatggttttgc
aagATGAAGGTGCtacaatattttacaaattgaaTGGTATCAGCCTCATT
CATAAGTTGgcatttcaaaagaaaacaacaaGCTCCATTGTACAAAAGGC
CTTGATACTCCTCGGAAATTCTTCACTGTCGAATTATGAGAACAAGAATG
CTTTGTGCAATGATCAAATTATGGATTACTTGAAAAACAAGATCTTTGGT
GATCCGCCTAACTCCAAGATGATTGCTTCAGGATCTTATTTTATTGCGTG
TCTTTGTTCTGCAAATGGAGTTTCCATCCGAAAGGAGAAATACAGAACAA
TGTATCTAAAGAACAATGGTTTGAGAAAGCATCATCCAACTGTCCTGTTG
TTCTCACTCATATCTCACATGCACTAAAGTCTTTGATGAATAAACCTCGC
AATGTGGAAAACCAAATAGTCTGTTCACGGTTGTTAAACTTGGCTTTATC
GACATTGGCAAGTGGCAAATATGCAGAAGATGCCAGGATAGAGGCTTTGC
AATTTATTGCTGATTGTTTGTATGAGAATGAGAAGACacaaaacatattc
aatatgaTTGGTGGAATGAGAATCTTGTCTCAAGTCCTCAAAACTGAGAT
GAAAAATGAATGCGACAACAAAGCTAAGAGGAATTTGGAGTTAACCAAGA
CCTTATTGGATACAGTAACGGTCG
Run BLAST on NCBI

transcript from alignment at sc0000127:264343..267404+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011347 ID=TCONS_00011347|Name=TCONS_00011347|organism=Clytia hemisphaerica|type=transcript|length=3062bp|location=Sequence derived from alignment at sc0000127:264343..267404+ (Clytia hemisphaerica)
AATAGATTAAAATCATATAAACAGATACATGATAGATCATTGATGTTTGA
ATTGATCGAATTTCTCGAACAAGATCTTTACAAAAATGGGTTCTTCCTTG
GAAAATGACATGGTGTGTCTCTTAGAGTCAATACAATGCCTTGGAAATGA
CAAAAGCCAGATTATCCAAGCACTGGAGCATTTAGCTGAaatggttttgc
aaggtaaagtaaaaaaattatgatgagGTTTTGAATTTTACTATACAGAA
AATAGGATATGTACGTATTTGaaagtaaattattttattttattttgtta
gttCGCTTTCACTATCTGGTCATTTATGTGATGTTTAAAGTCCATAATGT
CCTTATcaaattttttgtccattttagtaatttttttctgtGTTAGTTAT
TCTGTTATGTTATGTGGATAACTCAATCTAAAAACTATCATTTGCGGGCA
AAAGTTTCTCAAAATTGGGCCTGTGCAAAGAAAATTAAGCCTAACTCAAg
gtgtatttttttaaacttttcattcattttaataaggcaaaaaagttatt
tttcgcTGTTTTTACCTTTACAATGTACTTTCTCTTATTACATCCTTACT
GCGCAACCTTACTTCTGAACTAAGATTAATCTGTCCTGTCCTTCTGCTTA
TTTTTATAGATGAAGGTGCtacaatattttacaaattgaaTGGTATCAGC
CTCATTCATAAGTTGgcatttcaaaagaaaacaacaaGCTCCATTGTACA
AAAGGCCTTGATACTCCTCGGAAATTCTTCACTGTCGAATTGTAAGTAGA
TGCTGAGGATGAAAAAATTCCATGCTTTAACCAAGGAAATCGTTGatcct
tttttgtttgtttttttacattGAGTGAGAAACCAAGATTCGAATACTAA
AGTATTGTTGAAATTTAATGTTTACGAGAATCAGATTTTAATTTACCCGT
ATCCTGCCAGTCTTGAAATCTTTCATAAAAAAAGGaacgtttttttttca
gtttacaATGTCTGTTCTTTTTCCTTTGGAAAAggcagttttttttaaat
cgacattcaaattacaaacaaatgatattttttttaatcatatgAGCGAA
TCCTCTCTAATTCTTACAGATGAGAACAAGAATGCTTTGTGCAATGATCA
AATTATGGATTACTTGAAAAACAAGATCTTTGGTGATCCGCCTAACTCCA
AGATGATTGCTTCAGGATCTTATTTTATTGCGTGTCTTTGTTCTGCAAAT
GGTACAGTATCATgatttttatttatgatttctCTTGAAATGGCCTATTT
GTATCTATTGGTTTTGGTATTTTCTTTAGTTTGGTTTCGTGCTGTTTCGT
GACAAGTTTTGACACAATCTTACAATTAGTATCCAGTTAAGTGATTATAG
TTTTAATTATTCTTCATTTAGGTTCATTTTTTTGAACGTTTACATGCGAT
TTATAAGAGATTTTAATACAAAGTTTATCCaagtaaattttcattttaga
taAAGTACAGAACAAAGCAAGGAATTCAAAGCTTCTAGATAAATTAGTCT
TACTTTACAGGTTTGTAACATAAATTAGTTGCTCAGTGAATTGCATGAAT
TGTATGATAGTTGGTTGCCTTAGTCAAGTGACATGGTAATGAGAACTACA
TTGTATAGGTTGCAGATTtcacttcaaaaaaaaagaatcccGTAGAAACC
ATGACCTTCATGACGGGAATATTTTTGAGTATTGTACATTCTTTGACAAG
aagaataattatttttatgtGCTACTAAGATTCAAGATATAGGTATCATC
CAATGGTCCTGTGATTTTTTTGATGTTGGCTATATACTTTGAAATAAAGC
CAGAATTTTAACTTTTGGCAAATTCTTTTCTAGGAGTTTCCATCCGAAAG
GAGAAATACAGAACAATGTATCTAAAGAACAATGGTTTGAGAAAGCATCA
TCCAACTGTCCTGTTGTTCTCACTCATATCTCACATGCACTAAAGTCTTT
GATGAATAAACCTCGCAATGGTTCGTATAGTTTAAAGGACATTTTTTTTA
CTACTGtattaatgaaattgaatggATATCCAACATTGATCTAATATTTC
ATGTAATAGTATGTACTGTATTACTTCGAATGAACGCCCCCTTTTTTAAA
CGGCCcttttgaataaacgcccctcctaaaatccaaaaaaattgataaac
gcCCGGgtcgtttattcgaagtaatacggtattagCTTAGATTGATCAGG
CGAAAATCTTTTCAACGTTattttttccttgatttctttttttaaaacgT
ATTTCAGCAGAATGTTTCACTACAGCCTCTAGAACTGTTAATGTATCTGT
TAGTTTTCCTCCTCATATTGCTGCAATGTACTATGtatctgaaaaattat
ttttgaataatttgtttACAGTGGAAAACCAAATAGTCTGTTCACGGTTG
TTAAACTTGGCTTTATCGACATTGGCAAGTGGCAAATATGCAGAAGATGC
CAGGATAGAGGCTTTGCAATTTATTGCTGATTGTTTGTATGAGAATGGTT
TGTCTAGAAATTCCGCTTCTTTTTTAACGTAAAGCTTTTTTTTCATAACC
CTGACAAAAGAATGTTAATTCATAACATGCGGAATGAGGATGTTCTCTGC
TAATTAAAATGTTTACCAGGTACCATAATCTACAAGTCTCATTCTTAATA
AGTTAAACAGCTCTGAGATATCATCGAGCACTTTTCTCACTAAAAAGAAC
AGGAATAATGATATGCAATCTAAGGTCTAatttaaaagcaaaagtcaatc
CTTAGGGTAAAACTTTCATGTGCATTATATTCCATATCTAGAGTATTCTG
CAGTTGTATTAGGTAGGATTCAACAAGGTTAGAGTCATTAGATAATccat
tttattctttttttgcagAGAAGACacaaaacatattcaatatgaTTGGT
GGAATGAGAATCTTGTCTCAAGTCCTCAAAACTGAGATGAAAAATGAATG
CGACAACAAAGCTAAGAGGAATTTGGAGTTAACCAAGACCTTATTGGATA
CAGTAACGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006362XLOC_006362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011347-exon-sc0000127-1491911889:264343..264545TCONS_00011347-exon-sc0000127-1491911889:264343..264545Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1510915933:264343..264545TCONS_00011347-exon-sc0000127-1510915933:264343..264545Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1575043694:264343..264545TCONS_00011347-exon-sc0000127-1575043694:264343..264545Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1491911889:265002..265133TCONS_00011347-exon-sc0000127-1491911889:265002..265133Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1510915933:265002..265133TCONS_00011347-exon-sc0000127-1510915933:265002..265133Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1575043694:265002..265133TCONS_00011347-exon-sc0000127-1575043694:265002..265133Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1491911889:265462..265593TCONS_00011347-exon-sc0000127-1491911889:265462..265593Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1510915933:265462..265593TCONS_00011347-exon-sc0000127-1510915933:265462..265593Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1575043694:265462..265593TCONS_00011347-exon-sc0000127-1575043694:265462..265593Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1491911889:266226..266362TCONS_00011347-exon-sc0000127-1491911889:266226..266362Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1510915933:266226..266362TCONS_00011347-exon-sc0000127-1510915933:266226..266362Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1575043694:266226..266362TCONS_00011347-exon-sc0000127-1575043694:266226..266362Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1491911889:266764..266889TCONS_00011347-exon-sc0000127-1491911889:266764..266889Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1510915933:266764..266889TCONS_00011347-exon-sc0000127-1510915933:266764..266889Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1575043694:266764..266889TCONS_00011347-exon-sc0000127-1575043694:266764..266889Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1491911889:267261..267404TCONS_00011347-exon-sc0000127-1491911889:267261..267404Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1510915933:267261..267404TCONS_00011347-exon-sc0000127-1510915933:267261..267404Clytia hemisphaericaexon
TCONS_00011347-exon-sc0000127-1575043694:267261..267404TCONS_00011347-exon-sc0000127-1575043694:267261..267404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:264343..267404 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1432	0.731755	0.428781	0.354585	2.17959	0.903557	1.73059	1.53584	0.841045	1.60056	0.972912	1.14048	0.816072	1.10543	0.703703	0.942789	0.800993	0.595003	0	0.593453	0	0.528356	0	1.61276	0	0	0.146307	0	0.429148	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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