TCONS_00011324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011324
Unique NameTCONS_00011324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011324 ID=TCONS_00011324|Name=TCONS_00011324|organism=Clytia hemisphaerica|type=transcript|length=612bp
GAATAGAGAGGGATTGCTTGAGCATAGAAGGTGTAATCAGAAcaatgttt
tgaagaaaagaagatgGGCTTTGAACTCAGGTGTCATGGAAATGTCAGAC
GTGTATGCTAGAAAATCATAACATGGGGCTGTGGGCCATAGAACAAACTT
TGAAAAGATGAAGATCCTATTTTAGTGTTGGAGAGGAGACAAAGTCATGT
GGCTGTCTAGGCTTTTTGAATGGCCGTAATGGAATAGATTTGTAGACAGT
TGTCTAGgcgagaagaagaagaagcatTTAGGACTTCCCCTAGAGTTAGG
TGTGCCGGCAGGAGTAAACACTCTTTGCTTTTCTAGAACCACCCATCTTC
TCTACCAAGAGACATGAATTCGATCAGGAGTCATGTCTCATCAACTTATA
CCTGTAGACATGGAACATGACATGACCTATCAGTGGAGGGATTCAAAGAC
TGATATGTGCCTGAGTGAAGCCTCCAGAGGAGGGTGAGAAgattgagaaa
aagaaaaagagatgtTGAAAGAAATATGTGTTTTGAAAGCAGTGGGGAAA
ATTAGAAATATTCTTACATTGAGGTGAAGTTTAGCAGTAGTCTTCAGTGT
TGGATGCAAAga
Run BLAST on NCBI

transcript from alignment at sc0000124:133292..133903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011324 ID=TCONS_00011324|Name=TCONS_00011324|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at sc0000124:133292..133903 (Clytia hemisphaerica)
tcTTTGCATCCAACACTGAAGACTACTGCTAAACTTCACCTCAATGTAAG
AATATTTCTAATTTTCCCCACTGCTTTCAAAACACATATTTCTTTCAaca
tctctttttctttttctcaatcTTCTCACCCTCCTCTGGAGGCTTCACTC
AGGCACATATCAGTCTTTGAATCCCTCCACTGATAGGTCATGTCATGTTC
CATGTCTACAGGTATAAGTTGATGAGACATGACTCCTGATCGAATTCATG
TCTCTTGGTAGAGAAGATGGGTGGTTCTAGAAAAGCAAAGAGTGTTTACT
CCTGCCGGCACACCTAACTCTAGGGGAAGTCCTAAatgcttcttcttctt
ctcgcCTAGACAACTGTCTACAAATCTATTCCATTACGGCCATTCAAAAA
GCCTAGACAGCCACATGACTTTGTCTCCTCTCCAACACTAAAATAGGATC
TTCATCTTTTCAAAGTTTGTTCTATGGCCCACAGCCCCATGTTATGATTT
TCTAGCATACACGTCTGACATTTCCATGACACCTGAGTTCAAAGCCcatc
ttcttttcttcaaaacattgTTCTGATTACACCTTCTATGCTCAAGCAAT
CCCTCTCTATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006345XLOC_006345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011324-exon-sc0000124-1491911889:133292..133903TCONS_00011324-exon-sc0000124-1491911889:133292..133903Clytia hemisphaericaexon
TCONS_00011324-exon-sc0000124-1510915933:133292..133903TCONS_00011324-exon-sc0000124-1510915933:133292..133903Clytia hemisphaericaexon
TCONS_00011324-exon-sc0000124-1575043694:133292..133903TCONS_00011324-exon-sc0000124-1575043694:133292..133903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:133292..133903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5522	0.42678	1.38531	1.45174	0.772548	0.688326	0	0	0.399619	0.65752	1.7035	0.428383	0.585033	0.136693	0.18699	0.260069	0	0.242239	0.147978	0.121822	0.363763	0.497107	1.26996e-08	0.391149	0.969189	1.03042	0	0	0.362316	0.425921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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