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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011312 ID=TCONS_00011312|Name=TCONS_00011312|organism=Clytia hemisphaerica|type=transcript|length=2793bpRun BLAST on NCBI protein sequence of TCONS_00011312-protein >TCONS_00011312-protein ID=TCONS_00011312-protein|Name=TCONS_00011312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MSVPINRRGSIPILSMSAQQKKPPNIIQTNIGQQKEKPPLIRRISEECSKRun BLAST on NCBI transcript from alignment at sc0000124:406168..457934- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011312 ID=TCONS_00011312|Name=TCONS_00011312|organism=Clytia hemisphaerica|type=transcript|length=51767bp|location=Sequence derived from alignment at sc0000124:406168..457934- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000124:406168..457934- >TCONS_00011312 ID=TCONS_00011312|Name=TCONS_00011312|organism=Clytia hemisphaerica|type=CDS|length=27540bp|location=Sequence derived from alignment at sc0000124:406168..457934- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011312 vs. Swiss-Prot (Human)
Match: SAHH3 (Adenosylhomocysteinase 3 OS=Homo sapiens GN=AHCYL2 PE=1 SV=1) HSP 1 Score: 760.755 bits (1963), Expect = 0.000e+0 Identity = 341/441 (77.32%), Postives = 398/441 (90.25%), Query Frame = 3
Query: 438 NPREKEQANSSGQSDFCIRNIKLYDFGRREIDIAEQEMPGIVLLRKRNHNEKPLEGARIVGCTHITAQAAVLIETLSALGAQVRWCACNIYSTQNEVAAALAEAGYPIFAWKGESEEDFWWCIEQCISYQGWTPNLVLDDGGDATHLLLKKYPHIFNQLKGIVEESVTGVHRLYQLSKQQKLSVPAMNVNDSVTKTKFDNLYCCRESILDSLKRTTDVMFGGKQVLVSGYGEVGKGCCQALKGLGAVVYVTEVDPICALQACMDGFRVVRMEEVIRNIDILITCTGNKHVVRRDHMDRLKNGCIVCNMGHSNTEIDVQSLRTADLTWQKVRSQVDHVIWPDGKRITLLAEGRLVNLSCSSVPSFVLSITATTQAVALIELFRAPVGRYQNDVYLLPKKMDEYVAALHLPSFDAHLTELSDEQVKYSGISKTGPFKPHYYRY 1760
+PR+K+Q NS G SDFC++NIK +FGRREI+IAEQEMP ++ LRKR EKPL GA+IVGCTHITAQ AVL+ETL ALGAQ RW ACNIYST NEVAAALAE+G+P+FAWKGESE+DFWWCI++C++ +GW PN++LDDGGD TH + KKYP++F ++KGIVEESVTGVHRLYQLSK KL VPAMNVNDSVTK KFDNLYCCRESILD LKRTTD+MFGGKQV+V GYGEVGKGCC ALK +G++VYVTE+DPICALQACMDGFR+V++ EVIR +DI+ITCTGNK+VV R+H+DR+KN CIVCNMGHSNTEIDV SLRT +LTW++VRSQVDHVIWPDGKRI LLAEGRL+NLSCS+VP+FVLSITATTQA+ALIEL+ AP GRY+ DVYLLPKKMDEYVA+LHLP+FDAHLTEL+DEQ KY G++K GPFKP+YYRY
Sbjct: 171 SPRDKQQKNSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY 611 The following BLAST results are available for this feature:
BLAST of TCONS_00011312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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