TCONS_00011303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011303
Unique NameTCONS_00011303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011303 ID=TCONS_00011303|Name=TCONS_00011303|organism=Clytia hemisphaerica|type=transcript|length=2910bp
taacgttatatggatgttgtgaacgttagataaacgttgaaataacgttg
tgtgccagctgggttgccATTAGTCGTGTTTCCTAGCCTTGTGAAAACGG
TTAACTAGGCTAGCTAAatatttctctcttttttagTCACATACAAATTA
AATCTAGAAATGGTTGAAACGGAAGCAGAGCGAAACTATTCTTTTTCTAC
TTGTGGTGAAAATTCCAACGATACTGATACCATCATCTCTGGACAGTCTC
ATGCAGAACCTTTGGTAAAGGAAGAGGATCAAGAAGTATCCACTAAATAT
AAATGGTACAATGTCAACACTGAATTTCTACCTGCAAAAATATGCTACTT
CACCGACTCTGCCAAAAAGTTGACTTATCTACCAAATTTGATTCTGTTTT
TAACAAGCTTGGGTTTGTCGAAATCAGAAGCTGGAGTTATTTTGGGATTT
AGCACACTTGGAACTATCCTCGGCGGTCCATTCTGGGGTATGTTGGCAGA
TAAATGGAAAAGTCATCGCCTTATTATATTTATAATCGCCTTTGCTTCGT
GCTTTACAATGTGTTGTCAGCCATTTGTTGCCCTCCATGTGGCAAATCAA
CCAACAGCAAATAGTTGTAAATCAGTAGTTGCTAAGACAACTAATTCAAC
AGTGTTTCATCATAATCATACAGATCAATTTTCCAAGGTTAACAACGTGA
CCGTATCGATCCTTGATCAAAACCTAACAAACTTGCTTAAAACACCTTCG
AAAACATTAACCAATGGCAACAATGATGAAACTACAAACAATCATGATTC
AAGATATGGGAAATTATTCTTCGTCTTCCTATTCCTTGCCTTTGCAACAT
CTTTTACTGATAACAGCATTGCTGCTTTTATTGACACGGGAACTGTTCGT
AAAATCCAGTTATCCAAAGGTAGAAAAGTAATCTATGGAAGACAACGTAC
TTTATCTCCTGCTGGTGCAATCATTGGCAACATAAGCAGTAACCTGTTCA
TCCAATATTTTCCTCAAGCTTCGATTTCATGTTTCACAGGAATGTTTATA
TGTTATGCAGTGTTTTCGATTGCTACCTTAGTGTCGTTAATTTATCTATA
TGGCGATCTTAATTTCAATGAAGACTTGAAAAATAACAGTAAAGATgaca
atgaaagtgaaaatgagCACATTTTCAAACATGCTGAAAAAGATGATGAT
AATGAGGTTACTGAGGACGCCTTTGAGAAGATCGGATTGAACAATGTTAC
GAATAGTCGGTCAAGTTTCCGAAGGACATTAATCAGAACCATATCTAGAG
TTGATATCATCTTCNTTTGCTTCGTGCTTTACAATGTGTTGTCAGCCATT
TGTTGCCCTCCATGTGGCAAATCAACCAACAGCAAATAGTTGTAAATCAG
TAGTTGCCAGCAAGACAACTAATTCAACAGTGTTTCATCATAATAATACA
GATCAATTTTCCAAGGTTAACAACGTGACCGTATCGATCCTTGATCAAAA
CCTAACAAACTTGCTTAAAACACCTTCGAAAACATTAACCAATGGCAACA
ATGATGAGACTACAAACAATCATGATTCAAGATATGGGAAATTATTCTTC
GTCTTCCTATTCCTTGCCTTTGCAACATCTTTTACTGATAACAGCATTGC
TGCTTTTATTGACACGGGAACTGTTCGTAAAATCCAGTTATCCAAAGGTA
GAAAAGTAATCTATGGAAGACAACGTACTTTATCTCCTGCTGGTGCAATC
ATTGGCAACATAAGCAGTAACCTGTTCATCCAATATTTTCCTCAAGCTTC
GATTTCATGTTTCACAGGAATGTTTCTATGTTATGCAGTGTTTTCGATTG
CTACCTTAGTGTCGTTAATATATTTGTATGGCGATCTTAATTTCAATGAA
GACTTGAAAAATAACAGTAAAGATGACAATGAAAGTGAAAATGAGCACAT
TTTCAAACATGCTGAAAAAGATGATGATAATGCCGTTACTGAGGACGTCT
TTGAGAAGATCGGATTGAACAATGTTACGAATAGTCGGTCAAGTTTCCGA
AGGACATTAATCAGAACCATATCTAGAGTTGATATCATCTTTTTGTATTT
GACAGCTCTGGTGTTTGGTATTTCAGCATCTTCTATGTTAAGTTTTCACT
ATTTGTTGTTAAAAGATTTAAATGCTGATTCGATTTATTACAGTTTGATT
ACAATGGCCGGAGCTGTTGGAGGAACATTAGGATTCTTTTACACCAACAA
AGTAATAAGGGCTCTAAAAACATGGAAGACCTTGATTCTATGTTCAGTTT
TGCAAGTTGGATGTCTGCTAACGTATGGTTTATCAAATGCTCCTTGGATT
CTTATTGCAGTTCGACCATTTTTCGGTTTTGCATTTTGTACCATTCTAAC
TACATGCTTATCTTATCTAAAAGATCATTGCCCCGTTGACGTTATAACAA
CCACAGTATCAATATGTTTAACCTTATTTTACGGAGTTGGCCCTGGAATC
GGACTAACAATCGGTGGTAGAATTTATGAGAATTATAATGGCAAGACTTT
ATTTTGTAGTATGTCTGTTTTGGTTTCATCTTGGACTCTGGTTATCTTTG
GCTATATCATGATGTCTTCGAAAAGATCTGGTGATTTAAAAGGTGAAGAA
GATGAGAAAGTTATGTTTAAAAAGAACAATGCTTGAATGTTTTAACTTAA
AATACATAATCCAAGTTAAAATATTAACCTTTTTTTCAGGACGAGAGAAA
TTCGTTTTAATGGGTACAGAACTCGAATACTTAAAATTTTCTGCTCTTTC
CAAAGGTAACTAGACAGCTCTTTGAAAGGCTTAGTTCTCGAAATATATAG
GTTTGAAGTATGATCTTTAGTATGTGTAACTTAGTACCCGTACGTCCGGA
ATGGGTTAAC
Run BLAST on NCBI

transcript from alignment at sc0000124:335494..339187-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011303 ID=TCONS_00011303|Name=TCONS_00011303|organism=Clytia hemisphaerica|type=transcript|length=3694bp|location=Sequence derived from alignment at sc0000124:335494..339187- (Clytia hemisphaerica)
TAACGTTATATGGATGTTGTGAACGTTAGATAAACGTTGAAATAACGTTG
TGTGCCAGCTGGGTTGCCATTAGTCGTGTTTCCTAGCCTTGTGAAAACGG
TTAACTAGGCTAGCTAAATATTTCTCTCTTTTTTAGTCACATACAAATTA
AATCTAGAAATGGTTGAAACGGAAGCAGAGCGAAACTATTCTTTTTCTAC
TTGTGGTGAAAATTCCAACGATACTGATACCATCATCTCTGGACAGTCTC
ATGCAGAACCTTTGGTAAAGGAAGAGGATCAAGAAGTATCCACTAAATAT
AAATGGTACAATGTCAACACTGAATTTCTACCTGCAAAAATATGCTACTT
CACCGACTCTGCCAAAAAGTTGACTTATCTACCAAATTTGATTCTGTTTT
TAACAAGCTTGGGTTTGTCGAAATCAGAAGCTGGAGTTATTTTGGGATTT
AGGTATGCATTATTTGTTATAGAGCTGACACACATGATATGTGAAAAATA
GACTAGATCACAAACTAAAATCAGTATATTGAAAACTGTTTNCATCATAA
TCATACAGATCAATTTTCCAAGGTTAACAACGTGACCGTATCGATCCTTG
ATCAAAACCTAACAAACTTGCTTAAAACACCTTCGAAAACATTAACCAAT
GGCAACAATGATGAAACTACAAACAATCATGATTCAAGATATGGGAAATT
ATTCTTCGTCTTCCTATTCCTTGCCTTTGCAACATCTTTTACTGATAACA
GCATTGCTGCTTTTATTGACACGGGAACTGTTCGTAAAATCCAGTTATCC
AAAGGTAGAAAAGTAATCTATGGAAGACAACGTACTTTATCTCCTGCTGG
TGCAATCATTGGCAACATAAGCAGTAACCTGTTCATCCAATATTTTCCTC
AAGCTTCGATTTCATGTTTCACAGGAATGTTTATATGTTATGCAGTGTTT
TCGATTGCTACCTTAGTGTCGTTAATTTATCTANAAACTTACTCTGTTTG
GGGGATAGCTTGCTTTGCTAGGGGTAAGTTTTGAATGTCCGAGGGTTCAA
CTGATGCTTGTTCCGGGAGTTAGACCTGCTGTCCAGAGGGTCGAAAGACA
CAATGTTCGGGAGGGAAGGGGGAATTTCCAAAAAGTAAGTGTATCCTCCA
CCCCAATGTTCCATTTTTTTTCTGGAAGAGTCCAATCTATAAAGCATAGA
ACAATGTGTTCACAAAATTCCTCTTTATACTTTTAGCACACTTGGAACTA
TCCTCGGCGGTCCATTCTGGGGTATGTTGGCAGATAAATGGAAAAGTCAT
CGCCTTATTATATTTATAATCGCCTTTGCTTCGTGCTTTACAATGTGTTG
TCAGCCATTTGTTGCCCTCCATGTGGCAAATCAACCAACAGCAAATAGTT
GTAAATCAGTAGTTGCTAAGACAACTAATTCAACAGTGTTTCATCATAAT
CATACAGATCAATTTTCCAAGGTTAACAACGTGACCGTATCGATCCTTGA
TCAAAACCTAACAAACTTGCTTAAAACACCTTCGAAAACATTAACCAATG
GCAACAATGATGAAACTACAAACAATCATGATTCAAGATATGGGAAATTA
TTCTTCGTCTTCCTATTCCTTGCCTTTGCAACATCTTTTACTGATAACAG
CATTGCTGCTTTTATTGACACGGGAACTGTTCGTAAAATCCAGTTATCCA
AAGGTAGAAAAGTAATCTATGGAAGACAACGTACTTTATCTCCTGCTGGT
GCAATCATTGGCAACATAAGCAGTAACCTGTTCATCCAATATTTTCCTCA
AGCTTCGATTTCATGTTTCACAGGAATGTTTATATGTTATGCAGTGTTTT
CGATTGCTACCTTAGTGTCGTTAATTTATCTATATGGCGATCTTAATTTC
AATGAAGACTTGAAAAATAACAGTAAAGATGACAATGAAAGTGAAAATGA
GCACATTTTCAAACATGCTGAAAAAGATGATGATAATGAGGTTACTGAGG
ACGCCTTTGAGAAGATCGGATTGAACAATGTTACGAATAGTCGGTCAAGT
TTCCGAAGGACATTAATCAGAACCATATCTAGAGTTGATATCATCTTCNT
TTGCTTCGTGCTTTACAATGTGTTGTCAGCCATTTGTTGCCCTCCATGTG
GCAAATCAACCAACAGCAAATAGTTGTAAATCAGTAGTTGCCAGCAAGAC
AACTAATTCAACAGTGTTTCATCATAATAATACAGATCAATTTTCCAAGG
TTAACAACGTGACCGTATCGATCCTTGATCAAAACCTAACAAACTTGCTT
AAAACACCTTCGAAAACATTAACCAATGGCAACAATGATGAGACTACAAA
CAATCATGATTCAAGATATGGGAAATTATTCTTCGTCTTCCTATTCCTTG
CCTTTGCAACATCTTTTACTGATAACAGCATTGCTGCTTTTATTGACACG
GGAACTGTTCGTAAAATCCAGTTATCCAAAGGTAGAAAAGTAATCTATGG
AAGACAACGTACTTTATCTCCTGCTGGTGCAATCATTGGCAACATAAGCA
GTAACCTGTTCATCCAATATTTTCCTCAAGCTTCGATTTCATGTTTCACA
GGAATGTTTCTATGTTATGCAGTGTTTTCGATTGCTACCTTAGTGTCGTT
AATATATTTGTATGGCGATCTTAATTTCAATGAAGACTTGAAAAATAACA
GTAAAGATGACAATGAAAGTGAAAATGAGCACATTTTCAAACATGCTGAA
AAAGATGATGATAATGCCGTTACTGAGGACGTCTTTGAGAAGATCGGATT
GAACAATGTTACGAATAGTCGGTCAAGTTTCCGAAGGACATTAATCAGAA
CCATATCTAGAGTTGATATCATCTTTTTGTATTTGACAGCTCTGGTGTTT
GGTATTTCAGCATCTTCTATGTTAAGTTTTCACTATTTGTTGTTAAAAGA
TTTAAATGCTGATTCGATTTATTACAGTTTGATTACAATGGCCGGAGCTG
TTGGAGGAACATTAGGATTCTTTTACACCAACAAAGTAATAAGGGCTCTA
AAAACATGGAAGACCTTGATTCTATGTTCAGTTTTGCAAGTTGGATGTCT
GCTAACGTATGGTTTATCAAATGCTCCTTGGATTCTTATTGCAGTTCGAC
CATTTTTCGGTTTTGCATTTTGTACCATTCTAACTACATGCTTATCTTAT
CTAAAAGATCATTGCCCCGTTGACGTTATAACAACCACAGTATCAATATG
TTTAACCTTATTTTACGGAGTTGGCCCTGGAATCGGACTAACAATCGGTG
GTAGAATTTATGAGAATTATAATGGCAAGACTTTATTTTGTAGTATGTCT
GTTTTGGTTTCATCTTGGACTCTGGTTATCTTTGGCTATATCATGATGTC
TTCGAAAAGATCTGGTGATTTAAAAGGTGAAGAAGATGAGAAAGTTATGT
TTAAAAAGAACAATGCTTGAATGTTTTAACTTAAAATACATAATCCAAGT
TAAAATATTAACCTTTTTTTCAGGACGAGAGAAATTCGTTTTAATGGGTA
CAGAACTCGAATACTTAAAATTTTCTGCTCTTTCCAAAGGTAACTAGACA
GCTCTTTGAAAGGCTTAGTTCTCGAAATATATAGGTTTGAAGTATGATCT
TTAGTATGTGTAACTTAGTACCCGTACGTCCGGAATGGGTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006334XLOC_006334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011303-exon-sc0000124-1575043694:338736..339187TCONS_00011303-exon-sc0000124-1575043694:338736..339187Clytia hemisphaericaexon
TCONS_00011303-exon-sc0000124-1575043694:335494..337951TCONS_00011303-exon-sc0000124-1575043694:335494..337951Clytia hemisphaericaexon
TCONS_00011303-exon-sc0000124-1510915933:338736..339187TCONS_00011303-exon-sc0000124-1510915933:338736..339187Clytia hemisphaericaexon
TCONS_00011303-exon-sc0000124-1510915933:335494..337951TCONS_00011303-exon-sc0000124-1510915933:335494..337951Clytia hemisphaericaexon
TCONS_00011303-exon-sc0000124-1491911889:338736..339187TCONS_00011303-exon-sc0000124-1491911889:338736..339187Clytia hemisphaericaexon
TCONS_00011303-exon-sc0000124-1491911889:335494..337951TCONS_00011303-exon-sc0000124-1491911889:335494..337951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:335494..339187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65692	2.1337	0.815996	0.796601	4.56647	3.18078	0.805092	1.41184	0.23126	0.326917	0.475027	0.260822	0.467745	0.298813	0.2442	0.238371	0.294879	0.33129	0.539953	0.434632	0.571504	0.939752	2.16513	1.62143	1.25851	1.23683	3.71146	2.52991	0.785471	1.02509
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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