|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011303 ID=TCONS_00011303|Name=TCONS_00011303|organism=Clytia hemisphaerica|type=transcript|length=2910bp taacgttatatggatgttgtgaacgttagataaacgttgaaataacgttg tgtgccagctgggttgccATTAGTCGTGTTTCCTAGCCTTGTGAAAACGG TTAACTAGGCTAGCTAAatatttctctcttttttagTCACATACAAATTA AATCTAGAAATGGTTGAAACGGAAGCAGAGCGAAACTATTCTTTTTCTAC TTGTGGTGAAAATTCCAACGATACTGATACCATCATCTCTGGACAGTCTC ATGCAGAACCTTTGGTAAAGGAAGAGGATCAAGAAGTATCCACTAAATAT AAATGGTACAATGTCAACACTGAATTTCTACCTGCAAAAATATGCTACTT CACCGACTCTGCCAAAAAGTTGACTTATCTACCAAATTTGATTCTGTTTT TAACAAGCTTGGGTTTGTCGAAATCAGAAGCTGGAGTTATTTTGGGATTT AGCACACTTGGAACTATCCTCGGCGGTCCATTCTGGGGTATGTTGGCAGA TAAATGGAAAAGTCATCGCCTTATTATATTTATAATCGCCTTTGCTTCGT GCTTTACAATGTGTTGTCAGCCATTTGTTGCCCTCCATGTGGCAAATCAA CCAACAGCAAATAGTTGTAAATCAGTAGTTGCTAAGACAACTAATTCAAC AGTGTTTCATCATAATCATACAGATCAATTTTCCAAGGTTAACAACGTGA CCGTATCGATCCTTGATCAAAACCTAACAAACTTGCTTAAAACACCTTCG AAAACATTAACCAATGGCAACAATGATGAAACTACAAACAATCATGATTC AAGATATGGGAAATTATTCTTCGTCTTCCTATTCCTTGCCTTTGCAACAT CTTTTACTGATAACAGCATTGCTGCTTTTATTGACACGGGAACTGTTCGT AAAATCCAGTTATCCAAAGGTAGAAAAGTAATCTATGGAAGACAACGTAC TTTATCTCCTGCTGGTGCAATCATTGGCAACATAAGCAGTAACCTGTTCA TCCAATATTTTCCTCAAGCTTCGATTTCATGTTTCACAGGAATGTTTATA TGTTATGCAGTGTTTTCGATTGCTACCTTAGTGTCGTTAATTTATCTATA TGGCGATCTTAATTTCAATGAAGACTTGAAAAATAACAGTAAAGATgaca atgaaagtgaaaatgagCACATTTTCAAACATGCTGAAAAAGATGATGAT AATGAGGTTACTGAGGACGCCTTTGAGAAGATCGGATTGAACAATGTTAC GAATAGTCGGTCAAGTTTCCGAAGGACATTAATCAGAACCATATCTAGAG TTGATATCATCTTCNTTTGCTTCGTGCTTTACAATGTGTTGTCAGCCATT TGTTGCCCTCCATGTGGCAAATCAACCAACAGCAAATAGTTGTAAATCAG TAGTTGCCAGCAAGACAACTAATTCAACAGTGTTTCATCATAATAATACA GATCAATTTTCCAAGGTTAACAACGTGACCGTATCGATCCTTGATCAAAA CCTAACAAACTTGCTTAAAACACCTTCGAAAACATTAACCAATGGCAACA ATGATGAGACTACAAACAATCATGATTCAAGATATGGGAAATTATTCTTC GTCTTCCTATTCCTTGCCTTTGCAACATCTTTTACTGATAACAGCATTGC TGCTTTTATTGACACGGGAACTGTTCGTAAAATCCAGTTATCCAAAGGTA GAAAAGTAATCTATGGAAGACAACGTACTTTATCTCCTGCTGGTGCAATC ATTGGCAACATAAGCAGTAACCTGTTCATCCAATATTTTCCTCAAGCTTC GATTTCATGTTTCACAGGAATGTTTCTATGTTATGCAGTGTTTTCGATTG CTACCTTAGTGTCGTTAATATATTTGTATGGCGATCTTAATTTCAATGAA GACTTGAAAAATAACAGTAAAGATGACAATGAAAGTGAAAATGAGCACAT TTTCAAACATGCTGAAAAAGATGATGATAATGCCGTTACTGAGGACGTCT TTGAGAAGATCGGATTGAACAATGTTACGAATAGTCGGTCAAGTTTCCGA AGGACATTAATCAGAACCATATCTAGAGTTGATATCATCTTTTTGTATTT GACAGCTCTGGTGTTTGGTATTTCAGCATCTTCTATGTTAAGTTTTCACT ATTTGTTGTTAAAAGATTTAAATGCTGATTCGATTTATTACAGTTTGATT ACAATGGCCGGAGCTGTTGGAGGAACATTAGGATTCTTTTACACCAACAA AGTAATAAGGGCTCTAAAAACATGGAAGACCTTGATTCTATGTTCAGTTT TGCAAGTTGGATGTCTGCTAACGTATGGTTTATCAAATGCTCCTTGGATT CTTATTGCAGTTCGACCATTTTTCGGTTTTGCATTTTGTACCATTCTAAC TACATGCTTATCTTATCTAAAAGATCATTGCCCCGTTGACGTTATAACAA CCACAGTATCAATATGTTTAACCTTATTTTACGGAGTTGGCCCTGGAATC GGACTAACAATCGGTGGTAGAATTTATGAGAATTATAATGGCAAGACTTT ATTTTGTAGTATGTCTGTTTTGGTTTCATCTTGGACTCTGGTTATCTTTG GCTATATCATGATGTCTTCGAAAAGATCTGGTGATTTAAAAGGTGAAGAA GATGAGAAAGTTATGTTTAAAAAGAACAATGCTTGAATGTTTTAACTTAA AATACATAATCCAAGTTAAAATATTAACCTTTTTTTCAGGACGAGAGAAA TTCGTTTTAATGGGTACAGAACTCGAATACTTAAAATTTTCTGCTCTTTC CAAAGGTAACTAGACAGCTCTTTGAAAGGCTTAGTTCTCGAAATATATAG GTTTGAAGTATGATCTTTAGTATGTGTAACTTAGTACCCGTACGTCCGGA ATGGGTTAAC Run BLAST on NCBI transcript from alignment at sc0000124:335494..339187- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011303 ID=TCONS_00011303|Name=TCONS_00011303|organism=Clytia hemisphaerica|type=transcript|length=3694bp|location=Sequence derived from alignment at sc0000124:335494..339187- (Clytia hemisphaerica) TAACGTTATATGGATGTTGTGAACGTTAGATAAACGTTGAAATAACGTTG
TGTGCCAGCTGGGTTGCCATTAGTCGTGTTTCCTAGCCTTGTGAAAACGG
TTAACTAGGCTAGCTAAATATTTCTCTCTTTTTTAGTCACATACAAATTA
AATCTAGAAATGGTTGAAACGGAAGCAGAGCGAAACTATTCTTTTTCTAC
TTGTGGTGAAAATTCCAACGATACTGATACCATCATCTCTGGACAGTCTC
ATGCAGAACCTTTGGTAAAGGAAGAGGATCAAGAAGTATCCACTAAATAT
AAATGGTACAATGTCAACACTGAATTTCTACCTGCAAAAATATGCTACTT
CACCGACTCTGCCAAAAAGTTGACTTATCTACCAAATTTGATTCTGTTTT
TAACAAGCTTGGGTTTGTCGAAATCAGAAGCTGGAGTTATTTTGGGATTT
AGGTATGCATTATTTGTTATAGAGCTGACACACATGATATGTGAAAAATA
GACTAGATCACAAACTAAAATCAGTATATTGAAAACTGTTTNCATCATAA
TCATACAGATCAATTTTCCAAGGTTAACAACGTGACCGTATCGATCCTTG
ATCAAAACCTAACAAACTTGCTTAAAACACCTTCGAAAACATTAACCAAT
GGCAACAATGATGAAACTACAAACAATCATGATTCAAGATATGGGAAATT
ATTCTTCGTCTTCCTATTCCTTGCCTTTGCAACATCTTTTACTGATAACA
GCATTGCTGCTTTTATTGACACGGGAACTGTTCGTAAAATCCAGTTATCC
AAAGGTAGAAAAGTAATCTATGGAAGACAACGTACTTTATCTCCTGCTGG
TGCAATCATTGGCAACATAAGCAGTAACCTGTTCATCCAATATTTTCCTC
AAGCTTCGATTTCATGTTTCACAGGAATGTTTATATGTTATGCAGTGTTT
TCGATTGCTACCTTAGTGTCGTTAATTTATCTANAAACTTACTCTGTTTG
GGGGATAGCTTGCTTTGCTAGGGGTAAGTTTTGAATGTCCGAGGGTTCAA
CTGATGCTTGTTCCGGGAGTTAGACCTGCTGTCCAGAGGGTCGAAAGACA
CAATGTTCGGGAGGGAAGGGGGAATTTCCAAAAAGTAAGTGTATCCTCCA
CCCCAATGTTCCATTTTTTTTCTGGAAGAGTCCAATCTATAAAGCATAGA
ACAATGTGTTCACAAAATTCCTCTTTATACTTTTAGCACACTTGGAACTA
TCCTCGGCGGTCCATTCTGGGGTATGTTGGCAGATAAATGGAAAAGTCAT
CGCCTTATTATATTTATAATCGCCTTTGCTTCGTGCTTTACAATGTGTTG
TCAGCCATTTGTTGCCCTCCATGTGGCAAATCAACCAACAGCAAATAGTT
GTAAATCAGTAGTTGCTAAGACAACTAATTCAACAGTGTTTCATCATAAT
CATACAGATCAATTTTCCAAGGTTAACAACGTGACCGTATCGATCCTTGA
TCAAAACCTAACAAACTTGCTTAAAACACCTTCGAAAACATTAACCAATG
GCAACAATGATGAAACTACAAACAATCATGATTCAAGATATGGGAAATTA
TTCTTCGTCTTCCTATTCCTTGCCTTTGCAACATCTTTTACTGATAACAG
CATTGCTGCTTTTATTGACACGGGAACTGTTCGTAAAATCCAGTTATCCA
AAGGTAGAAAAGTAATCTATGGAAGACAACGTACTTTATCTCCTGCTGGT
GCAATCATTGGCAACATAAGCAGTAACCTGTTCATCCAATATTTTCCTCA
AGCTTCGATTTCATGTTTCACAGGAATGTTTATATGTTATGCAGTGTTTT
CGATTGCTACCTTAGTGTCGTTAATTTATCTATATGGCGATCTTAATTTC
AATGAAGACTTGAAAAATAACAGTAAAGATGACAATGAAAGTGAAAATGA
GCACATTTTCAAACATGCTGAAAAAGATGATGATAATGAGGTTACTGAGG
ACGCCTTTGAGAAGATCGGATTGAACAATGTTACGAATAGTCGGTCAAGT
TTCCGAAGGACATTAATCAGAACCATATCTAGAGTTGATATCATCTTCNT
TTGCTTCGTGCTTTACAATGTGTTGTCAGCCATTTGTTGCCCTCCATGTG
GCAAATCAACCAACAGCAAATAGTTGTAAATCAGTAGTTGCCAGCAAGAC
AACTAATTCAACAGTGTTTCATCATAATAATACAGATCAATTTTCCAAGG
TTAACAACGTGACCGTATCGATCCTTGATCAAAACCTAACAAACTTGCTT
AAAACACCTTCGAAAACATTAACCAATGGCAACAATGATGAGACTACAAA
CAATCATGATTCAAGATATGGGAAATTATTCTTCGTCTTCCTATTCCTTG
CCTTTGCAACATCTTTTACTGATAACAGCATTGCTGCTTTTATTGACACG
GGAACTGTTCGTAAAATCCAGTTATCCAAAGGTAGAAAAGTAATCTATGG
AAGACAACGTACTTTATCTCCTGCTGGTGCAATCATTGGCAACATAAGCA
GTAACCTGTTCATCCAATATTTTCCTCAAGCTTCGATTTCATGTTTCACA
GGAATGTTTCTATGTTATGCAGTGTTTTCGATTGCTACCTTAGTGTCGTT
AATATATTTGTATGGCGATCTTAATTTCAATGAAGACTTGAAAAATAACA
GTAAAGATGACAATGAAAGTGAAAATGAGCACATTTTCAAACATGCTGAA
AAAGATGATGATAATGCCGTTACTGAGGACGTCTTTGAGAAGATCGGATT
GAACAATGTTACGAATAGTCGGTCAAGTTTCCGAAGGACATTAATCAGAA
CCATATCTAGAGTTGATATCATCTTTTTGTATTTGACAGCTCTGGTGTTT
GGTATTTCAGCATCTTCTATGTTAAGTTTTCACTATTTGTTGTTAAAAGA
TTTAAATGCTGATTCGATTTATTACAGTTTGATTACAATGGCCGGAGCTG
TTGGAGGAACATTAGGATTCTTTTACACCAACAAAGTAATAAGGGCTCTA
AAAACATGGAAGACCTTGATTCTATGTTCAGTTTTGCAAGTTGGATGTCT
GCTAACGTATGGTTTATCAAATGCTCCTTGGATTCTTATTGCAGTTCGAC
CATTTTTCGGTTTTGCATTTTGTACCATTCTAACTACATGCTTATCTTAT
CTAAAAGATCATTGCCCCGTTGACGTTATAACAACCACAGTATCAATATG
TTTAACCTTATTTTACGGAGTTGGCCCTGGAATCGGACTAACAATCGGTG
GTAGAATTTATGAGAATTATAATGGCAAGACTTTATTTTGTAGTATGTCT
GTTTTGGTTTCATCTTGGACTCTGGTTATCTTTGGCTATATCATGATGTC
TTCGAAAAGATCTGGTGATTTAAAAGGTGAAGAAGATGAGAAAGTTATGT
TTAAAAAGAACAATGCTTGAATGTTTTAACTTAAAATACATAATCCAAGT
TAAAATATTAACCTTTTTTTCAGGACGAGAGAAATTCGTTTTAATGGGTA
CAGAACTCGAATACTTAAAATTTTCTGCTCTTTCCAAAGGTAACTAGACA
GCTCTTTGAAAGGCTTAGTTCTCGAAATATATAGGTTTGAAGTATGATCT
TTAGTATGTGTAACTTAGTACCCGTACGTCCGGAATGGGTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011303-exon-sc0000124-1575043694:338736..339187 | TCONS_00011303-exon-sc0000124-1575043694:338736..339187 | Clytia hemisphaerica | exon |
TCONS_00011303-exon-sc0000124-1575043694:335494..337951 | TCONS_00011303-exon-sc0000124-1575043694:335494..337951 | Clytia hemisphaerica | exon |
TCONS_00011303-exon-sc0000124-1510915933:338736..339187 | TCONS_00011303-exon-sc0000124-1510915933:338736..339187 | Clytia hemisphaerica | exon |
TCONS_00011303-exon-sc0000124-1510915933:335494..337951 | TCONS_00011303-exon-sc0000124-1510915933:335494..337951 | Clytia hemisphaerica | exon |
TCONS_00011303-exon-sc0000124-1491911889:338736..339187 | TCONS_00011303-exon-sc0000124-1491911889:338736..339187 | Clytia hemisphaerica | exon |
TCONS_00011303-exon-sc0000124-1491911889:335494..337951 | TCONS_00011303-exon-sc0000124-1491911889:335494..337951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000124 | supercontig | sc0000124:335494..339187 - |
Blast
The following BLAST results are available for this feature:
|