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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011283 ID=TCONS_00011283|Name=TCONS_00011283|organism=Clytia hemisphaerica|type=transcript|length=1324bp
ttcagagATTACTAATAtacaaattatcaaaaaaaaaaatacaatacata
tTTGGAACTTATATATACGTAAATGGTTATCACCCTTACAATGGCGTAAT
CAAACTTATTGATGACTTAACATTACGTAATTGGAACTACGTATGGAACA
TAACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTATGCTGAGG
GGTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATACCTGAAGAA
GGGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAGCTTTTCAA
ATCAGGATCTGACTTGGTTGATGATTTTGCTCTCAAAATGAAGTTGGAGA
AACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACTTCCCCGAA
GATAACATCAAATTACCCAACTACACTTCTAATATTACGGACAGCATAAC
AAAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGGTATCCCGT
TAGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCGGCTCGACG
AGTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAAGAATTgag
agatttttttgaaaagcaaATCACGTGGTTattggaagaagaagaaggag
aagactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACGCCCTTGTG
TTACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTTAGTTTCTT
GGCTAGGCGAGACGAACCAGTCGCCATATCATTTAGCATCCTAAAGGTTT
TCCGCTTCAAAACCTTCTGCTGGGTTGGTTGGTATATACTTAGATTTCAC
GTTGGAAATCGATCTTTACTAGACCTCTCTTATATCGATATTGAATTATA
TATCTCAGTAATCTACAAAAATGAAATAAGATATAACTCTGTCGAGGTGA
TAAGATGGATGTTTTTTGAATATGAAACAGTTGAAATTGTATGTCCTGGC
ACATCTGTAAATCAAGTTTGCCTCATTTTAAcgatatcactcaaaaaaat
tgaatattcgTATTTTGTTacgaaaatgataaaattttgagttaCACATT
TAAGGCGAAAAATAAAACCAACAGCAAACGCCTGATGTTTTCTATATGCT
TTCTTATAAACTTGGTATGAAAGAGTAGACTAAAAAAATGACCGTACGTG
TGACCCCAAATAACCCTTACGGTGCTTTTTCTTGAGAATTTTTGAGGGCA
AAGTATGGTCaccttttccaaattttaccacccttagagtgcaatttttc
tcatctttgctcattttgaCCCNN Run BLAST on NCBI protein sequence of TCONS_00011283-protein >TCONS_00011283-protein ID=TCONS_00011283-protein|Name=TCONS_00011283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MEHNSLTGIACARPIIYAEGLFAPCTLEDGKFIPEEGLSQQDLCSILNGE
LFKSGSDLVDDFALKMKLEKLAKKDETNFELDYFPEDNIKLPNYTSNITD
SITKSTEKEREEILKDGIPLVRIRQNSSGNAPGGSTSSVDILRTPSFDSE
ELRDFFEKQITWLLEEEEGEDFVVMETCSRFRDALVLLDILKQHNLPCVL
SFLARRDEPVAISFSILKVFRFKTFCWVGWYILRFHVGNRSLLDLSYIDI
ELYISVIYKNEIRYNSVEVIRWMFFEYETVEIVCPGTSVNQVCLILTISL
KKIEYSYFVTKMIKF Run BLAST on NCBI transcript from alignment at sc0000124:535939..539288+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011283 ID=TCONS_00011283|Name=TCONS_00011283|organism=Clytia hemisphaerica|type=transcript|length=3350bp|location=Sequence derived from alignment at sc0000124:535939..539288+ (Clytia hemisphaerica)
ttcagagATTACTAATAtacaaattatcaaaaaaaaaaatacaatacata
tTTGGAACTTATATATACGTAAATGGTTATCACCCTTACAATGGCGTAAT
CAAACTTATTGATGACTTAACATTACGTAATTGGAACTACGTATGGAACA
TAACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTATGCTGAGG
GGTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATACCTGAAGAA
GGGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAGCTTTTCAA
ATCAGGATCTGACTTGGTTGATGATTTTGCTgtaagtttgatttttcttt
ttttcgttcAATTACCACCGTTAGTCCTTTACTGATCTCTTaagtagtaa
gtctgcgaccgcagtcggaggcgacccgaagtctcctctttcgatagctg
tctacccgaatgtaggggagggcaccactTATTcgccctggatttctcca
cttacccttgatccttctcttaattgctaagcaccaagcagagaggcatc
aagtaccattttgagaatctttggtatgacccggctgggggttgaaccgt
AGCctgatgctctaccactgcaccacGGCTCAATAATCTCGAAAATATCA
TCAGCAATCTGTATTTTGTTGAATAAAAGCTTTGACCCATTTTTAAGCTA
CGGTCTTTTGTAGAAATCAATTACTGtttgatttaattatttttgttgtt
taatGACAGGAAGGGAATTGAGGTTTTAGATCTGGGTAGACTTCCTTTAA
AGTGGTGTCGTAACTAAAGGCCATTCGCTTTAAGTATCCCACTCTTCATT
GCTACCATATGCTGAAATCACGATCAAAAGAAAATCAGGCTCATTACGCT
TACATGTTTTAAGTTAAGAACAGTCTTTAACTCGCTTTATGTTTTGGGTT
AAAACATTCAGGGGTCCCTAAAGGCCGGTCTCCACTTGTGCGCGCTGTGA
TTGCACCTTTTGGCCTCAATCCTTTTTGCTTGGAAAAAAGATTACGTCAT
AAAAATGTAGCGCGCGCTCGGTACGATCGAAGCGCGCGCAAGTTGAGACC
GGCCTTAAGATGTACGGATGTACTAAACTGCAGTTTTTCACATGGTAGCT
AAGAACAGTCTTTAACTCGCTTTATGTATGTGGTTAAAACATTCAGAGGT
ccctaaaggccggtctccacttgtgcGCGCTGTGATTGCACCTTTTGGcc
tcaatcctttttgcttggaaaaaagattacgtcataaaaatgtagcgcgc
gctcggtacgatcgaagcgcgcgcaagttgagaccggccttaagatgTAC
GGATGTACTAAACTGCAGTTTTTCACATGGTAGCTAAGAACAGTCTTTAA
CTCGCTTTATGTATGTGGTTAAAACATTCAGGGGTccctaaaggccggtc
tccacttgtgcGCGCTGTGATTGCACCTTTTGGCCTCAAtccttttagct
tggaaaaaagattacgtcataaaaatgtagcgcgcgctcggtacgatcga
agcgcgcgcaagttgagaccggccttaagatgTATGGATGTACTAAACTG
CAAAAAATAAGCCGGCCAGTTGGAAACcactttcaaagaattcttcaGAA
ATCGGTCTGATAAGGCAATCTAACTCTTGTACGTTTTTATTGGAACGAGT
TATGACAAAGTTTTGACTGAAATCTTCATTGATGTGTATCCAGTCTATTT
AAATCAAGGTCTTTTTTATTGTCCCATGCTGACCCTCTGATGCAAAAACT
GAATTATTATAtgaagttcttttttttttttatctacagCTCAAAATGAA
GTTGGAGAAACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACT
TCCCCGAAGATAACATCAAATTACCCAACTACACTTCTAATATTACGGAC
AGCATAACAAAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGG
TATCCCGTTAGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCG
GCTCGACGAGTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAA
GAATTgagagatttttttgaaaagcaaATCACGTGGTTattggaagaaga
agaaggagaagactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACG
CCCTTGTGTTACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTT
AGTTTCTTGGCTAGGCGAGACGAACCAGTCGCCATATCATTTAGTAAGAT
ACAAATTGGTCTCGATAGCCTGATGTTTTGCTTGTTTCAAGCCTGAGTAA
AGATTTGATTGAATGAGGCATGGAGATGAATAATGTTTGACAGTTTTAAT
GTCAAAGTTTTGGCCAAGGATATCATAAATAATTCAGTAGTGAGACTAGT
ACGGGCGAATATCTCAACTTTTGTTCTGATTTTTAATTCAGACCATCGAT
AGATTGAGATAAATATTCGAACAATAAGCGAGAATAAGGCAGCATGGTTC
TACTTCGCtgttgacaaatcaaaaggtCCAACCTCAAGATTATTGCCTGA
GAAAActaagaatttttctgtttgtctaaacacaaattttgagattgacc
ctGTTTCATGTAGAAAGGACCCTCCTCACTATTCAAAATAGGCCAATCTC
AAATTTTAGGCTAGCTAGACAGAAAAACTCCTAGCTTTCCCAGACACTAA
TTTTGTGATTGacccttttgattggtcaacAGCAATTTGAGACCTGAAAT
CTTTCTCTCAGGCATCCTAAAGGTTTTCCGCTTCAAAACCTTCTGCTGGG
TTGGTTGGTATATACTTAGATTTCACGTTGGAAATCGATCTTTACTAGAC
CTCTCTTATATCGATATTGAATTATATATCTCAGTAATCTACAAAAATGA
AATAAGATATAACTCTGTCGAGGTGATAAGATGGATGTTTTTTGAATATG
AAACAGTTGAAATTGTATGTCCTGGCACATCTGTAAATCAAGTTTGCCTC
ATTTTAAcgatatcactcaaaaaaattgaatattcgTATTTTGTTacgaa
aatgataaaattttgagttaCACATTTAAGGCGAAAAATAAAACCAACAG
CAAACGCCTGATGTTTTCTATATGCTTTCTTATAAACTTGGTATGAAAGA
GTAGACTAAAAAAATGACCGTACGTGTGACCCCAAATAACCCTTACGGTG
CTTTTTCTTGAGAATTTTTGAGGGCAAAGTATGGTCaccttttccaaatt
ttaccacccttagagtgcaatttttctcatctttgctcattttgaCCCNN
Coding sequence (CDS) from alignment at sc0000124:535939..539288+ >TCONS_00011283 ID=TCONS_00011283|Name=TCONS_00011283|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000124:535939..539288+ (Clytia hemisphaerica)
ATGGAACATAACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTA
TGCTGAGGGGTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATAC
CTGAAGAAGGGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAG
CTTTTCAAATCAGGATCTGACTTGGTTGATGATTTTGCTCTCAAAATGAA
GTTGGAGAAACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACT
TCCCCGAAGATAACATCAAATTACCCAACTACACTTCTAATATTACGGAC
AGCATAACAAAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGG
TATCCCGTTAGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCG
GCTCGACGAGTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAA
GAATTgagagatttttttgaaaagcaaATCACGTGGTTattggaagaaga
agaaggagaagactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACG
CCCTTGTGTTACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTT
AGTTTCTTGGCTAGGCGAGACGAACCAGTCGCCATATCATTTAGCATCCT
AAAGGTTTTCCGCTTCAAAACCTTCTGCTGGGTTGGTTGGTATATACTTA
GATTTCACGTTGGAAATCGATCTTTACTAGACCTCTCTTATATCGATATT
GAATTATATATCTCAGTAATCTACAAAAATGAAATAAGATATAACTCTGT
CGAGGTGATAAGATGGATGTTTTTTGAATATGAAACAGTTGAAATTGTAT
GTCCTGGCACATCTGTAAATCAAGTTTGCCTCATTTTAAcgatatcactc
aaaaaaattgaatattcgTATTTTGTTacgaaaatgataaaattttgaAT
GGAACATAACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTATG
CTGAGGGGTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATACCT
GAAGAAGGGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAGCT
TTTCAAATCAGGATCTGACTTGGTTGATGATTTTGCTCTCAAAATGAAGT
TGGAGAAACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACTTC
CCCGAAGATAACATCAAATTACCCAACTACACTTCTAATATTACGGACAG
CATAACAAAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGGTA
TCCCGTTAGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCGGC
TCGACGAGTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAAGA
ATTgagagatttttttgaaaagcaaATCACGTGGTTattggaagaagaag
aaggagaagactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACGCC
CTTGTGTTACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTTAG
TTTCTTGGCTAGGCGAGACGAACCAGTCGCCATATCATTTAGCATCCTAA
AGGTTTTCCGCTTCAAAACCTTCTGCTGGGTTGGTTGGTATATACTTAGA
TTTCACGTTGGAAATCGATCTTTACTAGACCTCTCTTATATCGATATTGA
ATTATATATCTCAGTAATCTACAAAAATGAAATAAGATATAACTCTGTCG
AGGTGATAAGATGGATGTTTTTTGAATATGAAACAGTTGAAATTGTATGT
CCTGGCACATCTGTAAATCAAGTTTGCCTCATTTTAAcgatatcactcaa
aaaaattgaatattcgTATTTTGTTacgaaaatgataaaattttgaATGG
AACATAACAGTCTAACGGGTATCGCGTGCGCCCGCCCGATCATTTATGCT
GAGGGGTTGTTCGCCCCTTGCACTCTTGAAGATGGGAAATTTATACCTGA
AGAAGGGCTGAGTCAGCAAGATCTATGTAGTATCTTAAATGGAGAGCTTT
TCAAATCAGGATCTGACTTGGTTGATGATTTTGCTCTCAAAATGAAGTTG
GAGAAACTCGCCAAAAAGGACGAAACGAATTTCGAATTGGATTACTTCCC
CGAAGATAACATCAAATTACCCAACTACACTTCTAATATTACGGACAGCA
TAACAAAAAGCACGGAAAAAGAACGTGAAGAAATACTGAAAGACGGTATC
CCGTTAGTACGGATACGACAGAACAGTAGCGGGAACGCCCCGGGCGGCTC
GACGAGTTCAGTAGATATTTTAAGGACGCCCTCGTTCGATTCTGAAGAAT
TgagagatttttttgaaaagcaaATCACGTGGTTattggaagaagaagaa
ggagaagactTTGTTGTCATGGAAACTTGCTCCCGTTTCCGAGACGCCCT
TGTGTTACTGGACATATTAAAGCAACATAATTTACCATGTGTGCTTAGTT
TCTTGGCTAGGCGAGACGAACCAGTCGCCATATCATTTAGCATCCTAAAG
GTTTTCCGCTTCAAAACCTTCTGCTGGGTTGGTTGGTATATACTTAGATT
TCACGTTGGAAATCGATCTTTACTAGACCTCTCTTATATCGATATTGAAT
TATATATCTCAGTAATCTACAAAAATGAAATAAGATATAACTCTGTCGAG
GTGATAAGATGGATGTTTTTTGAATATGAAACAGTTGAAATTGTATGTCC
TGGCACATCTGTAAATCAAGTTTGCCTCATTTTAAcgatatcactcaaaa
aaattgaatattcgTATTTTGTTacgaaaatgataaaattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011283-exon-sc0000124-1491911889:535939..536269 | TCONS_00011283-exon-sc0000124-1491911889:535939..536269 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1510915933:535939..536269 | TCONS_00011283-exon-sc0000124-1510915933:535939..536269 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1575043694:535939..536269 | TCONS_00011283-exon-sc0000124-1575043694:535939..536269 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1491911889:537778..538231 | TCONS_00011283-exon-sc0000124-1491911889:537778..538231 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1510915933:537778..538231 | TCONS_00011283-exon-sc0000124-1510915933:537778..538231 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1575043694:537778..538231 | TCONS_00011283-exon-sc0000124-1575043694:537778..538231 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1491911889:538750..539288 | TCONS_00011283-exon-sc0000124-1491911889:538750..539288 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1510915933:538750..539288 | TCONS_00011283-exon-sc0000124-1510915933:538750..539288 | Clytia hemisphaerica | exon |
| TCONS_00011283-exon-sc0000124-1575043694:538750..539288 | TCONS_00011283-exon-sc0000124-1575043694:538750..539288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124 | supercontig | sc0000124:535939..539288 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003726 | HCY_dom |
Blast
The following BLAST results are available for this feature:
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