TCONS_00011268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011268
Unique NameTCONS_00011268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011268 ID=TCONS_00011268|Name=TCONS_00011268|organism=Clytia hemisphaerica|type=transcript|length=1435bp
GTCTAAGAGAAGACTATGAAAATGACGCTCATAAAAGTAGTGACATTACT
ATCTTCAATCATTTTGCTCGCTGAATCTGGGTTTGCAGTGTCTGTTTACC
CAACGCCTGCTGAAGTGGAAGCCGCTAAAGTTGCCATCGCAATGGTGATC
GACGGTAATATAAAGAATACTGATGAGAGACCATTCATTGCTGGTTTAGT
ACGTCTCGCATTTCACGATTGTGTTGGTAATGGTGGATGTGATGGTTGCA
TTAATCATGGATTAGCTGCGAACCGTGGACTATCAAAATATACCATCAAA
TTGGATGAAGCTTATAATACCATTTCCTCAACCATGTCACGTGCTGATTT
TTACACCCTGGCTGGTTATGTTGCTCTTGAGAAAGCAACTGAAGGACTGG
TCGAAGCCCAACGGTTTAACGCGGAACCGAAATTTGGAAGAGAAGATTGT
CCAGACTCGCCAGATGAAGATGAGGCCAATGAAAATTTCCCTGATGCTAA
ATGGAACTTAAATGCTGTTGAAGATTTCTTTGAGAACGATGGTTTCGTAT
TTGATCCAGCAGATGTTGTGGCAATCCTTGGTGCTCATTCACTTGGTAGA
GCCCATACCTCCAATTCAGGGTATGAAGGTAAATGGCTGAATGGATTTCG
TTTTCGTAATCCTAATGTAGCCCATTCAGAcgttttggacaatttttatt
ACCGACAAATTAATAATGATGGATGGAACCAGGTACAACTTGCTGACAAT
GGTAACTTTCAATGGCAACAAAACGNTTCACACTTCAGATACAACTTGCT
GACAATGGTAACTTTCAATGGCAACAAAACGATATTGAGCAACCTGTAGC
GCCTCTGGATGCTGAAGGTTTCCCACTAAATCCGACACGTCGAAGAGATC
CACGTCAAGTAAACATGTTCTTAAATGTCGATATGGCTTTGCGATGGGAT
TTGGGAACACCAAACTCACAAAATGGACAAGTTGTCTGTTCAACAACATC
AACGCCACCAACATGTCCAGATTCACCTCGATTCAATCTCTTTGATCGAT
ACAGAAGAAACAATGGGAATTTCATCAACGCTTTTGAAATCGCTTTTGAG
AAAATGGTGGAAAGTAAAGAAACTGAAACATTGTTGGAAGCTTAAGAAGA
ACTTCAATCAcaaccgaggggggggggcaacctcgttccctgcgtattgt
cagcttttgatgcttactgatagcgctagataataccctggcattggctg
gttttcgagCGCGTatgattacgtaattcaaaaacaaaacgtcagatttc
atttgttcctgggtttgaaaccattgcattgcagtgcAACTTTGTaacgt
taattttttttatgacgtattgttttgagaagttccccctctgagagggg
gaactcgcatcagccaacaccagggtattctctgg
Run BLAST on NCBI

transcript from alignment at sc0000124:140694..145882+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011268 ID=TCONS_00011268|Name=TCONS_00011268|organism=Clytia hemisphaerica|type=transcript|length=5189bp|location=Sequence derived from alignment at sc0000124:140694..145882+ (Clytia hemisphaerica)
GTCTAAGAGAAGACTATGAAAATGACGCTCATAAAAGTAGTGACATTACT
ATCTTCAATCATTTTGCTCGCTGAATCTGGGTTTGCAGTGTCTGTTTACC
CAACGCCTGCTGAAGTGGAAGCCGCTAAAGTTGCCATCGCAATGGTATGG
TAGCATTATTATTTTTTCCCAAGTTCCTTTTTACTTCTATCAGTTTTAGG
TAGGCTTTTGCTAACAGGAAACTTGCACCaaatttcttcccgccaaaatg
tcTTCTATTTATTATTCACACCATAGGTGATCGACGGTAATATAAAGAAT
ACTGATGAGAGACCATTCATTGCTGGTTTAGTACGTCTCGCATTTCACGA
TTGTGTTGGTAATGGTGGATGTGATGGTTGCATTAATCATGGATTAGCTG
CGAACCGTGGACTATCAAAGTAAGTTTTTACTTTATCATTGGATTCTTTc
cacttgtttcaaataaaaagttgTGAACAAAAATTCTGTCCCCGGTGAAG
TCCCTGCAACTTCCCAAGCTGACAacacacaatgttgttttaaagttttt
tatcacaacgtccatataacgtttgAGGAAAtcaaacaacgttgtgtgtc
aactGGTTCAGCCCCACTGGACTTTTGACCTTGATTTCATCCCCTTTTAA
ATTTTAAtgggaaaaattgcactccCTCAAAACCAATCCGCTTAATTTTT
TGACCTACGAACAATAGAATTATCTATCCCCAATGGGATTCCCCATTAGG
GAGGAAGTTCCCCgcggctgtgagacaggggtgtataattcGACCAAAAC
TATCGTTTACTGAATTTTAGGATGACTCTTAAAAGAGATTTTCTAAAGTC
AAATTGCTACATTTCATTGTAAtgaaatttctatttctattcatTTACAC
AGATATACCATCAAATTGGATGAAGCTTATAATACCATTTCCTCAACCAT
GTCACGTGCTGATTTTTACACCCTGGCTGGTTATGTTGCTCTTGAGAAAG
CAACTGAAGGACTGGTCGAAGCCCAACGGTTTAACGCGGAACCGAAATTT
GGAAGAGAAGATTGTCCAGACTCGCCAGATGAAGATGAGGCCAATGAAAA
TTTCCCTGATGCTAAATGGAACTTAAATGGTACATACAGACCATCTTTCT
CCGTTTAATTCTAATCTTTCTCTAACTCGAACTACCAAAATGCTCCCTGT
AATTTGATGTAATTCGATAATTCGATTCTCTGTCCCTTTAAAATCAATGC
GATATCTTGAAAGGATAGAAAGTTTCTCGAGATTGGGAAATCACTAATTC
TATTTGTCATTGTAAAACGATATATATTTGATGAGGTGTAGATTTTTAGG
TTTTATAACATTTTCCTGTTTGAGAAAACTAAAATGATTCCATTCTAGCT
CTTTAGGGTTTTAAACTCAATCTCCAACGTGTATTTTCTTTATCGGCAGC
TGTTGAAGATTTCTTTGAGAACGATGGTTTCGTATTTGATCCAGCAGATG
TTGTGGCAATCCTTGGTGCTCATTCACTTGGTAGAGCCCATACCTCCAAT
TCAGGTACATCTTTAaggggaattttttcttgaTGCATCTTGATGCAGTT
GTCTTTGTAGGTTCATCATTTCTTCAGGGGGAGTAATAGGTTTGATAGGA
TGACGGTTAACTGGTTAACGTTAAATGTTAATCCCTAGCATGCTATTTCA
ATCACTTAGAATTGTACAATGTGCCCCGTAACACCCTTGTGCCACAGACC
CAATGGGATCCCCGCCCCACTATAAAGTTTTGTCAAAGTTCtctcaaaaa
tggaaaaaatgccTTACAAATTTTAGTCCCACCGagaaattgaatttgat
ttcatccctttttgaaattaaaaggacataaattgcactccaaacgacca
ctactggattttttaagcttttctATCTCGATTAGggatttcgataaaaa
ttttcatcagACTTCAGGAAAAATTTCACGAGGATGTCTCTAATGCGTTT
TTATTTCAATATCTAGGGTATGAAGGTAAATGGCTGAATGGATTTCGTTT
TCGTAATCCTAATGTAGCCCATTCAGAcgttttggacaatttttattACC
GACAAATTAATAATGATGGATGGAACCAGGTGAGGTTTATTTTCCCCAGT
ACAAAATCCACTGAACTTATTGTACTAAATCCACTGATATCTGAAAGAAT
CTGGAGAAGATATTTCACATATGAAATGAAATATTCTCAATTGTTTTAAT
TATATacatatttatttataaaagcATTTAAAGTTTCTGTACCATTTCCA
AAGAAATTGGGTTTTCTAGAGTTCACCAAAATGTTCAGAACTTCTTTTTC
ttaattaatatttttgtaatcaaagccCCCGTATGTTTTTATACTTATAC
TACACAAATATGGCTTGCTTTTACATAAAAAACCTGCATGGTTCATTGAG
TTCATCCATACAGGGGTTGGACAAACCTTTGTAATTCAAAATGATAGTAG
tatcttgaaaattttaagataNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccccttatgg
aaaaatttatttttatactttAAAGTTATGGTGGACCAACTAAAACTTGT
CTTTTACtgcctggaaattttagaacaaTTTGTTACatcctaaaaaatga
aaaaaaaaaacactcctgtagaccccctggaaatcctTCAGAGTTTACCC
CACGGAAATGTTCGttcacccccctgtatggagataAAATGGAACGGTCC
ATTTCACACTTCAGGTACAACTTGCTGACAATGGTAACTTTCAATGGCAA
CAAAACGNTTCACACTTCAGATACAACTTGCTGACAATGGTAACTTTCAA
TGGCAACAAAACGATATTGAGCAACCTGTAGCGCCTCTGGATGCTGAAGG
TTTCCCACTAAATCCGACACGTCGAAGAGATCCACGTCAAGTAAACATGT
TCTTAAATGTCGATATGGCTTTGCGATGGGATTTGGGAACACCAAACTCA
CAAAATGGACAAGTAAGATATataccatacacgtttttttattagctcca
agcctggagttccttatttttccagagtatttcagcctcaaagttcctta
tcaagTTTCTTACTAAACTAAACTGCTAAGATTGGATTTGGTAAGTGTAa
aaccatagaggtataaagaaagacaggagatgaatttgtcggtaattggt
ctagccagaaaataaaaagttctttataagcacacacaatttcagaccca
atttgtagacaaaaagtcgctggagaattttggaggaaagtattaagcaa
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagccaa
taagatttcacctatcaacaaaagagctcattaaaaatgcacgatatatg
agattatgagcatgcatacatcgtaatttttttaatcgtagggcgagcat
tgttacaatagcatacttctcctgtttctttatacctccatggtaaaacc
tttttttataagtataACAATGGACGAAAAGTACAGGAAAAAACGTTTAT
TGAATGTTTTTGTAAATGCGAGCAAGATCAGGTTTAATTCTCTGTTCCTT
AACAAGTCCTTTTTTTCTGGACCATCTTCAGCCTCAAgctccttataaaa
aaaaacgtgtatactctATTTatttaaactatttttcttataagaacacc
caaaatctttaaaatcagttggatgttcttaatcttttacgttttaaaac
ctaaaaatgttttcattttcattttattttttgtgcatTGTCGTAATCTT
TATCCCCAACAACAAGCAATTGTCCACAGGAAAAGGTTTTTCCATGCTGC
AATGACTCTAaatgtaattttcattttgtactAGGTTGTCTGTTCAACAA
CATCAACGCCACCAACATGTCCAGATTCACCTCGATTCAATCTCTTTGAT
CGATACAGAAGAAACAATGGGAATTTCATCAACGCTTTTGAAATCGCTTT
TGAGAAAATGGTGGAAAGTAAAGAAACTGAAACATTGTTGGAAGCTTAAG
AAGAACTTCAATCAcaaccgaggggggggggcaacctcgttccctgcgta
ttgtcagcttttgatgcttactgatagcgctagataataccctggcattg
gctggttttcgagCGCGTatgattacgtaattcaaaaacaaaacgtcaga
tttcatttgttcctgggtttgaaaccattgcattgcagtgcAACTTTGTa
acgttaattttttttatgacgtattgttttgagaagttccccctctgaga
gggggaactcgcatcagccaacaccagggtattctctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006316XLOC_006316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011268-exon-sc0000124-1491911889:140694..140837TCONS_00011268-exon-sc0000124-1491911889:140694..140837Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:140694..140837TCONS_00011268-exon-sc0000124-1510915933:140694..140837Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:140694..140837TCONS_00011268-exon-sc0000124-1575043694:140694..140837Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1491911889:140970..141112TCONS_00011268-exon-sc0000124-1491911889:140970..141112Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:140970..141112TCONS_00011268-exon-sc0000124-1510915933:140970..141112Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:140970..141112TCONS_00011268-exon-sc0000124-1575043694:140970..141112Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1491911889:141596..141822TCONS_00011268-exon-sc0000124-1491911889:141596..141822Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:141596..141822TCONS_00011268-exon-sc0000124-1510915933:141596..141822Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:141596..141822TCONS_00011268-exon-sc0000124-1575043694:141596..141822Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1491911889:142143..142247TCONS_00011268-exon-sc0000124-1491911889:142143..142247Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:142143..142247TCONS_00011268-exon-sc0000124-1510915933:142143..142247Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:142143..142247TCONS_00011268-exon-sc0000124-1575043694:142143..142247Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1491911889:142710..142822TCONS_00011268-exon-sc0000124-1491911889:142710..142822Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:142710..142822TCONS_00011268-exon-sc0000124-1510915933:142710..142822Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:142710..142822TCONS_00011268-exon-sc0000124-1575043694:142710..142822Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1491911889:143558..143805TCONS_00011268-exon-sc0000124-1491911889:143558..143805Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:143558..143805TCONS_00011268-exon-sc0000124-1510915933:143558..143805Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:143558..143805TCONS_00011268-exon-sc0000124-1575043694:143558..143805Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1491911889:145428..145882TCONS_00011268-exon-sc0000124-1491911889:145428..145882Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1510915933:145428..145882TCONS_00011268-exon-sc0000124-1510915933:145428..145882Clytia hemisphaericaexon
TCONS_00011268-exon-sc0000124-1575043694:145428..145882TCONS_00011268-exon-sc0000124-1575043694:145428..145882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124supercontigsc0000124:140694..145882 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.62877	2.09737	1.06773	1.20933	0.64184	0.421928	0.842683	0	0	0	0	0	0	1.40945	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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