TCONS_00011261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011261
Unique NameTCONS_00011261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011261 ID=TCONS_00011261|Name=TCONS_00011261|organism=Clytia hemisphaerica|type=transcript|length=545bp
CCAAATCAATTGAAAGAACTTTGCGTCATCGTGCAATTCTTGATTAGAAA
CCACAATTTCTTTTAGTAAGCTTCAGTTAACATTATACGAACCAGTCTGT
GGGAATAAGCTTAGACGCCAACTCTCTCTGCTCACTGACACTTCCTCAGT
TGAAACTGAAGGATTTCTGTTCCTTTTATTTTCCTTCCTGTTTTTCCCGA
ACGTCAAAATGGTCCACAAAAACTTGCGAAAACCAGGGATCATTTTTGCG
TagatgaaaatgtttaaaatgttGTTCAAGTAGTAAACGAACACCACAAT
TGGATAAGTTAATAGCCTGTAACTATGGATAATAGTTGAGAAATGAGGCT
TGTAATAGTTTGCATAAATCACTAGACTCCACCGTAAGATATCTAACAAC
CTCACCGGTACGACAGTAACGGCGAAAATGAAGATAAGTCCGCTCAAAGT
ATGTAAAGCACGTCGATTCCTGAGCCGGCTCAAATCGTTTAAGGAGAATT
TGTTGACCTGTACTTCCTTGTGTATGGTTATCGATGACCTCCGAT
Run BLAST on NCBI

protein sequence of TCONS_00011261-protein

>TCONS_00011261-protein ID=TCONS_00011261-protein|Name=TCONS_00011261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
RRSSITIHKEVQVNKFSLNDLSRLRNRRALHTLSGLIFIFAVTVVPVRLL
DILRWSLVIYANYYKPHFSTIIHSYRLLTYPIVVFVYYLNNILNIFIYAK
MIPGFRKFLWTILTFGKNRKENKRNRNPSVSTEEVSVSRESWRLSLFPQT
GSYNVN
Run BLAST on NCBI

transcript from alignment at sc0000122:539224..539768

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011261 ID=TCONS_00011261|Name=TCONS_00011261|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at sc0000122:539224..539768 (Clytia hemisphaerica)
ATCGGAGGTCATCGATAACCATACACAAGGAAGTACAGGTCAACAAATTC
TCCTTAAACGATTTGAGCCGGCTCAGGAATCGACGTGCTTTACATACTTT
GAGCGGACTTATCTTCATTTTCGCCGTTACTGTCGTACCGGTGAGGTTGT
TAGATATCTTACGGTGGAGTCTAGTGATTTATGCAAACTATTACAAGCCT
CATTTCTCAACTATTATCCATAGTTACAGGCTATTAACTTATCCAATTGT
GGTGTTCGTTTACTACTTGAACaacattttaaacattttcatctACGCAA
AAATGATCCCTGGTTTTCGCAAGTTTTTGTGGACCATTTTGACGTTCGGG
AAAAACAGGAAGGAAAATAAAAGGAACAGAAATCCTTCAGTTTCAACTGA
GGAAGTGTCAGTGAGCAGAGAGAGTTGGCGTCTAAGCTTATTCCCACAGA
CTGGTTCGTATAATGTTAACTGAAGCTTACTAAAAGAAATTGTGGTTTCT
AATCAAGAATTGCACGATGACGCAAAGTTCTTTCAATTGATTTGG

Coding sequence (CDS) from alignment at sc0000122:539224..539768

>TCONS_00011261 ID=TCONS_00011261|Name=TCONS_00011261|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000122:539224..539768 (Clytia hemisphaerica)
CGGAGGTCATCGATAACCATACACAAGGAAGTACAGGTCAACAAATTCTC
CTTAAACGATTTGAGCCGGCTCAGGAATCGACGTGCTTTACATACTTTGA
GCGGACTTATCTTCATTTTCGCCGTTACTGTCGTACCGGTGAGGTTGTTA
GATATCTTACGGTGGAGTCTAGTGATTTATGCAAACTATTACAAGCCTCA
TTTCTCAACTATTATCCATAGTTACAGGCTATTAACTTATCCAATTGTGG
TGTTCGTTTACTACTTGAACaacattttaaacattttcatctACGCAAAA
ATGATCCCTGGTTTTCGCAAGTTTTTGTGGACCATTTTGACGTTCGGGAA
AAACAGGAAGGAAAATAAAAGGAACAGAAATCCTTCAGTTTCAACTGAGG
AAGTGTCAGTGAGCAGAGAGAGTTGGCGTCTAAGCTTATTCCCACAGACT
GGTTCGTATAATGTTAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006312XLOC_006312Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011261-proteinTCONS_00011261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011261-exon-sc0000122-1491911889:539224..539768TCONS_00011261-exon-sc0000122-1491911889:539224..539768Clytia hemisphaericaexon
TCONS_00011261-exon-sc0000122-1510915933:539224..539768TCONS_00011261-exon-sc0000122-1510915933:539224..539768Clytia hemisphaericaexon
TCONS_00011261-exon-sc0000122-1575043694:539224..539768TCONS_00011261-exon-sc0000122-1575043694:539224..539768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:539224..539768 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316766	0.205931	0.358658	0.818746	0.569568	0.11252	0.271501	0	0	0.220426	0	0.0703214	1.40447	1.53149	0.0599566	0.257371	0	0	7.96925	3.28872	0	0.149386	0.121066	0	0	0	0.144783	0	0.23439	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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