TCONS_00011259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011259
Unique NameTCONS_00011259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011259 ID=TCONS_00011259|Name=TCONS_00011259|organism=Clytia hemisphaerica|type=transcript|length=500bp
ATAGAAATATTGTTGATTATAGTGTATTTGATAAGATTTTTGTTACATTA
TTAGATGAGCATGCACCTCAAAAAACAAAGTTTGTCCGCGCTAATAATAA
GCAACATGTAACTAAGGATCTCAGGAAAGCTATTATGCTCCGTTCCCAAC
TTAAACGCACTGCCAATAAAACAAAGAATCCTGAGGATGTTGCTCGTTAT
AATCGTCAGAGAAACTTTGTTGTTAATAAAAATAGGAAAgctaagaaatt
tttcttcctcAAAAATGACCCAAAACAATCTCCCAAGGAATTTAGGGACA
CCTTTAAACCTTTGTTCtcaaataaggtcaatattGCGGGGGAAAGAATT
CAGCTCGTTGAAAATGGAAGTATTGTATCTAATGAGACTTGGATATTGCT
GAAACTTTCAACGATCATTACAATACTGTTACTGACAGATTGGACGTTCC
AAGTTGGAACAATGTTACAGGTGAAGGCTCTGATAGTGTCAATTCCGCca
Run BLAST on NCBI

protein sequence of TCONS_00011259-protein

>TCONS_00011259-protein ID=TCONS_00011259-protein|Name=TCONS_00011259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
RNIVDYSVFDKIFVTLLDEHAPQKTKFVRANNKQHVTKDLRKAIMLRSQL
KRTANKTKNPEDVARYNRQRNFVVNKNRKAKKFFFLKNDPKQSPKEFRDT
FKPLFSNKVNIAGERIQLVENGSIVSNETWILLKLSTIITILLLTDWTFQ
VGTMLQVKALIVSIPP
Run BLAST on NCBI

transcript from alignment at sc0000122:528450..528949

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011259 ID=TCONS_00011259|Name=TCONS_00011259|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at sc0000122:528450..528949 (Clytia hemisphaerica)
tgGCGGAATTGACACTATCAGAGCCTTCACCTGTAACATTGTTCCAACTT
GGAACGTCCAATCTGTCAGTAACAGTATTGTAATGATCGTTGAAAGTTTC
AGCAATATCCAAGTCTCATTAGATACAATACTTCCATTTTCAACGAGCTG
AATTCTTTCCCCCGCaatattgaccttatttgaGAACAAAGGTTTAAAGG
TGTCCCTAAATTCCTTGGGAGATTGTTTTGGGTCATTTTTgaggaagaaa
aatttcttagcTTTCCTATTTTTATTAACAACAAAGTTTCTCTGACGATT
ATAACGAGCAACATCCTCAGGATTCTTTGTTTTATTGGCAGTGCGTTTAA
GTTGGGAACGGAGCATAATAGCTTTCCTGAGATCCTTAGTTACATGTTGC
TTATTATTAGCGCGGACAAACTTTGTTTTTTGAGGTGCATGCTCATCTAA
TAATGTAACAAAAATCTTATCAAATACACTATAATCAACAATATTTCTAT

Coding sequence (CDS) from alignment at sc0000122:528450..528949

>TCONS_00011259 ID=TCONS_00011259|Name=TCONS_00011259|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000122:528450..528949 (Clytia hemisphaerica)
tgGCGGAATTGACACTATCAGAGCCTTCACCTGTAACATTGTTCCAACTT
GGAACGTCCAATCTGTCAGTAACAGTATTGTAATGATCGTTGAAAGTTTC
AGCAATATCCAAGTCTCATTAGATACAATACTTCCATTTTCAACGAGCTG
AATTCTTTCCCCCGCaatattgaccttatttgaGAACAAAGGTTTAAAGG
TGTCCCTAAATTCCTTGGGAGATTGTTTTGGGTCATTTTTgaggaagaaa
aatttcttagcTTTCCTATTTTTATTAACAACAAAGTTTCTCTGACGATT
ATAACGAGCAACATCCTCAGGATTCTTTGTTTTATTGGCAGTGCGTTTAA
GTTGGGAACGGAGCATAATAGCTTTCCTGAGATCCTTAGTTACATGTTGC
TTATTATTAGCGCGGACAAACTTTGTTTTTTGAGGTGCATGCTCATCTAA
TAATGTAACAAAAATCTTATCAAATACACTATAATCAACAATATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006310XLOC_006310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011259-exon-sc0000122-1491911889:528450..528949TCONS_00011259-exon-sc0000122-1491911889:528450..528949Clytia hemisphaericaexon
TCONS_00011259-exon-sc0000122-1510915933:528450..528949TCONS_00011259-exon-sc0000122-1510915933:528450..528949Clytia hemisphaericaexon
TCONS_00011259-exon-sc0000122-1575043694:528450..528949TCONS_00011259-exon-sc0000122-1575043694:528450..528949Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011259-proteinTCONS_00011259-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:528450..528949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145145	0.441822	0.164161	1.26306	9.87258	11.4883	6.89331	9.44865	1.27134	1.25581	0.313384	0.70189	0.987183	0.472591	0.140389	0.457671	0.842067	0.372121	0.848366	1.0354	1.73641	0.742294	0	0.252776	1.80714	1.16071	5.04351	5.00628	0.536141	5.02158e-06
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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