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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011240 ID=TCONS_00011240|Name=TCONS_00011240|organism=Clytia hemisphaerica|type=transcript|length=1923bpRun BLAST on NCBI protein sequence of TCONS_00011240-protein >TCONS_00011240-protein ID=TCONS_00011240-protein|Name=TCONS_00011240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=641bp TTASYHVKCPKTLRSRAQDAYLLFQDLCQLTNGDNPYWLQGMKTMTRTFGRun BLAST on NCBI transcript from alignment at sc0000122:561405..573121- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011240 ID=TCONS_00011240|Name=TCONS_00011240|organism=Clytia hemisphaerica|type=transcript|length=11717bp|location=Sequence derived from alignment at sc0000122:561405..573121- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000122:561405..573121- >TCONS_00011240 ID=TCONS_00011240|Name=TCONS_00011240|organism=Clytia hemisphaerica|type=CDS|length=26922bp|location=Sequence derived from alignment at sc0000122:561405..573121- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011240 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3) HSP 1 Score: 553.132 bits (1424), Expect = 8.075e-178 Identity = 316/659 (47.95%), Postives = 421/659 (63.88%), Query Frame = 1
Query: 34 TLRSRAQDAYLLFQDLCQLTNGDNPYWLQGMKTMTRTFGLELMESILRHYPKAFLDHPEFSFLLKERVCPLIIKLFSPNIKYKKGG--QNTPTIIEKPVFXXXXXXXXXXXXXIKQFYSLLVTECEIFLSLLVKFLDNNKPFWQRALALEVLHNLCSQPQILRSFCQFYDMQEHSTKVFKEICEALHKFVNSMLAREMSQVYXXXXXXXXXXXXXXXXXXEKAPTQSG-------------FLYRGQWIPVPNVS-QTNIKPIYLEQLEHKNEGVNVSESYAMHMVFLCVVEICQALDVLILDRISKKKKKDIENGDYLVENVKHTDKTGLGSEAFKHNQPLDVQDEDMTK--VWNKMIDHXXXXXXXXXXXXXETCTDEVATDHVLKGLQTFASVCGQLDRTNDRDQFISCICKSALPVNYYANNLSVVQQXXXXXXXXXXXXXXXXXXXXXQMNGHSIV---------------MTVKNIQCMRALLNLAHCHGGILGTAWYMTLVTLQHLTQILGLKLSSGGTNKTAKANEIPNLVISQSMMADIPVLSTMLSQLFESSKVLDDVSLHHLVDALCRLSTEDMEYA-TQNKEPCLFAVAKMLETGLVNIHRLRVLWRPLTNHLLEVCQQPHSRLREWAGDVLTTLIKRATFYDHKPP 1908
TL+ A+DAY+LFQDLCQL N D PYWL GM MTRTFGLEL+ES+L +P+ FL H EFSFLLKERVCPL+IKLFSPNIK+++G ++P +EKP F + +RLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLD +KP W RA+A+E +H C QPQ+LRSFCQ YDM++HSTKVF++I AL F+ S+ + + + S AP SG F YRG WIP+ ++ Q + K YLE L+ K E + E YAM + F C++++ + + +I + + + + + + T++ L S + D D+++ VW +M++ W LL+ LSLLL+ TDE AT+++LK T A++CG+L RD FI+ ICK +LP +Y L+ +K+ S + + + +V +T KNIQCMR LLNLAHCHG +LGT+W + L TLQHL ILGLK SSGG K +A E P+ V++ ++M D+PV+S +LS+LFESS+ LDDVSLHHL++ALC LS E M+ A NKEP LFAVAK+LETGLVN+HR+ +LWRPLT HLLEVCQ P+SR+REW + LT+LIK ++H PP
Sbjct: 208 TLKPCAKDAYMLFQDLCQLVNADAPYWLVGMTEMTRTFGLELLESVLNDFPQVFLQHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLVTECEIFLSLLVKFLDADKPQWLRAVAVESIHRFCVQPQLLRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPT----GNPATSNQAGNNNLGGSVSAPANSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLD-KVEPPTIPEGYAMSVAFHCLLDLVRGITSMIEGELGELETECQTTTEEGSSPTQSTEQQDLQSTS-------DQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNTTTAATLSNKSYSVQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPP 854 The following BLAST results are available for this feature:
BLAST of TCONS_00011240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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