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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011239 ID=TCONS_00011239|Name=TCONS_00011239|organism=Clytia hemisphaerica|type=transcript|length=4334bpRun BLAST on NCBI protein sequence of TCONS_00011239-protein >TCONS_00011239-protein ID=TCONS_00011239-protein|Name=TCONS_00011239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp PLQEMASIQFTDLRQQQFECVLNILQERATQLGTTWPVMLRIIGSATNQQRun BLAST on NCBI transcript from alignment at sc0000122:532983..560776- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011239 ID=TCONS_00011239|Name=TCONS_00011239|organism=Clytia hemisphaerica|type=transcript|length=27794bp|location=Sequence derived from alignment at sc0000122:532983..560776- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000122:532983..560776- >TCONS_00011239 ID=TCONS_00011239|Name=TCONS_00011239|organism=Clytia hemisphaerica|type=CDS|length=6720bp|location=Sequence derived from alignment at sc0000122:532983..560776- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011239 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3) HSP 1 Score: 462.225 bits (1188), Expect = 5.986e-136 Identity = 255/583 (43.74%), Postives = 354/583 (60.72%), Query Frame = 1
Query: 7 QEMASIQFTDLRQQQFECVLNILQERATQLGTTWPVMLRIIGSATNQQNDVITRLAFQSLQLVVTDYLPIIPCWCLQVLVEVVGKFGLQPNEINISLTAIGLLWNLSDFLYQNRSNLKRDLEEYKKCQPDLVKKEETAPQSPIHNIELYPSLDSLVPPFDSAWMCLYGKLGELCVDPRPAVRKSAGQTLFSTISAHGGLLENQTWYMVLWKVLFPLLEKVRSTSSVAANCPPPSDNTVLPGNILIHHSRDTAEKQWAETCVLTLAGVARVFSTRSHILKKLDEYPRAWALLLEIIESNALSKNSEVALNSLKSFQEIVDDLSANNKAPKSK--------------------------DSTSDASAISFVAD---ITD--TELDLWANAWRIWQNIGTNSMENEHFLCTTKDANGKTETRTIYPSQPYLTALINIFPPLYSRIFTRFGIGDLQRFCKILTRSISMPLHSDTSPYLLPTFHHETVLSPLQQSVLNSIKALQQPIPMLSGCNILDHNSQQPMYPTLFSMLLSFVEFACCPPKVA---------STPKETESYAPRGRAGEWVVMNYVPLAEHAMKM 1635
+EM++I D+R +Q ECVL ILQ + LG WP++L ++G+ N Q + + R AFQ LQLVVTD+LP +PC CLQ++V+V G FGL E+NISLT+IGLLWN+SD+ +Q ++++L + + Q +++ P H P+ PPFD W+CLY KLGELCVDPRPAVRKSAGQTLFSTI AHG LL++ TW+ V+WKVLF LL++VR +S+ A S GNILIHHSRDTAEKQWAET VLTLAGVAR+F+TR ++L+ L ++ RAW +LL+ I+S ALSKN+EV+L +LKSFQEI+ +S + K + DS + ++ +TD +L+LW AW W IG+ S + + T PSQP+LTALI IFP LY I T F + DLQ+ IL +IS+P+ SD SP++LP++ E VL+ LQ++VL ++ LQ+ I + + Q MYP +F LL+FVEF+C PP+ + + + +AP EWV +NYVP AE ++++
Sbjct: 870 KEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFH-----PA-----PPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGG----GNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPVVNVPVPVLIGPISGMSRPFVRTDSIGEKLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPITF----------DKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAISVPISSDASPFILPSY-TEAVLTSLQEAVLTALDVLQKAI-------CVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAP----AEWVALNYVPFAERSLEV 1416 HSP 2 Score: 317.005 bits (811), Expect = 5.850e-88 Identity = 155/318 (48.74%), Postives = 225/318 (70.75%), Query Frame = 2
Query: 1643 GEWVVMNYVPLAEHAMKMIQDLYKISHARENVVELKVLENIIKTIHLPLKLKYACPSQNTWKLAVDLLLCVLHDGLKVHIQQ-QGDQFTSTWMALATTLEDFLFSKSPPPDTQTLEQHQADEQIDVKILKLIRQEILPNSASLPQEFVDTLMKLLNRGSIHTTSTTMFDSDSVAFPMKEEFAKLCFETLLEFSFFKETDDKEETQLSRLALSSLMQRCRDVLLKYAEDERLNGEFPLPRARMFEISFAIKAISTLLSSFKKTVETRPNILDATQWSEVIGLYPVILECVTCTSHDVRIALKEALLEFQDLLAPPHPKM 2593
EWV +NYVP AE +++++ DLY+ + + VV KVL+NIIKT+ +PL LKY+CPS++TWKLAV LL VL GL V Q +F S W LA T EDFLF+KS PPD ++++ Q +E IDV++++LI EILP + +P+EFV +M +LN+GSIH+ S++ F + ++EEF+K+CFETLL+FSF + +E +SR+ALS L++R +DVL +Y EDERL+G+ PLPR ++ EI F +KA+STL+ S KK T+P +D W++VI LYP ++EC+TC+S +V ALKEAL+ F+D + PP ++
Sbjct: 1399 AEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLRVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNENIDVEVVQLISNEILPYANFIPKEFVGQIMTMLNKGSIHSQSSS-FTEAEIDIRLREEFSKMCFETLLQFSFSNKVTTPQEGYISRMALSVLLKRSQDVLHRYIEDERLSGKCPLPRQQVTEIIFVLKAVSTLIDSLKK---TQPENVDGNTWAQVIALYPTLVECITCSSSEVCSALKEALVPFKDFMQPPASRV 1712 The following BLAST results are available for this feature:
BLAST of TCONS_00011239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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