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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011226 ID=TCONS_00011226|Name=TCONS_00011226|organism=Clytia hemisphaerica|type=transcript|length=1617bp
GGGAAAAACCGATCTCAATCGGTGCGTTGCGAGTCAAAACCGGTGTGTGT
TTTTGCTgtatggaaatcgcttggcaggacacaatattagaacagaaaga
gaGCAAAGATAACCTACAAATAGaattgacgtcataaatgaaaatttgaa
taaagtaaatagcaaaaagttttttcatgtatttcatttgttttattcaA
AGCTATTGAAGCTCACTATTGCGTCATTTTTAGCTTAAATGGAGTGGTTA
ATTTCATTCTTCGTTCATTTTCATACCAACATGGCTTCGTTAACAACTGT
AAATAAGTGGCAAAGTTCTCTAAAATGCAAGCTAGATATATTGGAGATTG
TCGATGGAAAGGTCAGAAAAATGAAGTGTATTGTTTGCTCTCAGTTTTCT
GACAAGATTAAAGGAATGAAAGGATTCAGTCAGGCTTGGGTAGACGGTAC
AGAATCTATAAAGAAAGATAGTTTGGATAAACACATCAAAGGAGAGCCTC
ATAAACATGCAAAGGACCTTTCATTGAAAGTTTCCTTGGGTGCAAAATCT
TATAACAAggaaattgtttcaaaaacacCGATTGGTAAAGGTTTAACAAA
AATGcaagaagaagatgaaaaggTAATAAgtttttgtcataattttgatt
AACTACATAATCTGTATACTGTGTTTTCTCTTCTTTTGCAATGTATGTAA
TGATTAAATCATGAAAATTTAGTTCCTTCTAAAAATtaattacccagctg
gcacacaacgttgtttcaacgtacatctaacgttcataacgtccataaaa
cgttatatgaacgttaaaacgttatatgaacgttaaatcagttatatgaa
cgttaaaacaacTTTTTTCGAATAAGGGGCTTCAAGACGAATGTAAAAAC
GTCTTACATATCATAGAAATTCTTCTCATTACCCCGTTTACAAATGCCAA
AATTGAAAGAGTTTTCAGCAGAATGAATAGACTCCAGATTCCAGAAATCG
CTTGGGTCAGGCTAGATTGGAAACACAAATGCGCGTGGGAGAAGAAGGTG
TCTCAATCGACGAATTTGAGGCCGACCTTTATATCAATAAATGGTTTCAG
GAAAAGGTTCACAGGATAAACGGGGCAAAACCAAGAGATTATCCGTCAAA
GCGTCGCTCTGTTACATCTAAAAGTGGATATTCTGTCATTGATATTGCTC
AGGTTACCCTATCTGACCTGAAGAACAGTGATGATGAATTTGAACAGTTT
GATTGAGACATTTTGACTTTCAGTCACATGATGATAAACAAGACTTACAA
CTTACTACCACTTTAGCAttcgattttattactttttactttCTAGGTTA
TTCAGTTATTTTCTACAAGAATATGGttctataatatataatataatttt
actaCACAAATTTCCGTTCTCGTAGAGATTTCTCGAGACAGTAGAGACAt
aaatttattattgttttgaacACAAAATTCCAAAAGAGGCATACAAATTT
CTAAATTCTATCTACTTCACATTTATGTTGTAGATAGAACAATAGATCGT
AAATATAGATCGCATTTAATCGCAAATTACATCGCAAAACTCCAAAAGTG
CTTCGcaaacatctaaa Run BLAST on NCBI protein sequence of TCONS_00011226-protein >TCONS_00011226-protein ID=TCONS_00011226-protein|Name=TCONS_00011226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MEWLISFFVHFHTNMASLTTVNKWQSSLKCKLDILEIVDGKVRKMKCIVC
SQFSDKIKGMKGFSQAWVDGTESIKKDSLDKHIKGEPHKHAKDLSLKVSL
GAKSYNKEIVSKTPIGKGLTKMQEEDEKVISFCHNFD Run BLAST on NCBI transcript from alignment at sc0000122:83859..87165- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011226 ID=TCONS_00011226|Name=TCONS_00011226|organism=Clytia hemisphaerica|type=transcript|length=3307bp|location=Sequence derived from alignment at sc0000122:83859..87165- (Clytia hemisphaerica)
GGGAAAAACCGATCTCAATCGGTGCGTTGCGAGTCAAAACCGGTGTGTGT
TTTTGCTGTATGGAAATCGCTTGGCAGGACACAATATTAGAACAGAAAGA
GAGCAAAGATAACCTACAAATAGAATTGACGTCATAAATGAAAATTTGAA
TAAAGTAAATAGCAAAAAGTTTTTTCATGTATTTCATTTGTTTTATTCAA
AGCTATTGAAGCTCACTATTGCGTCATTTTTAGCTTAAATGGAGTGGTTA
ATTTCATTCTTCGTTCATTTTCATACCAACATGGCTTCGTTAACAACTGT
AAATAAGTGGCAAAGTTCTCTAAAATGCAAGCTAGATATATTGGAGATTG
TCGATGGAAAGGTCAGAAAAATGAAGTGTATTGTTTGCTCTCAGTTTTCT
GACAAGATTAAAGGAATGAAAGGATTCAGTCAGGCTTGGGTAGACGGTAC
AGAATCTATAAAGAAAGATAGTTTGGATAAACACATCAAAGGAGAGCCTC
ATAAACATGCAAAGGACCTTTCATTGAAAGTTTCCTTGGGTGCAAAATCT
TATAACAAGGAAATTGTTTCAAAAACACCGATTGGTAAAGGTTTAACAAA
AATGCAAGAAGAAGATGAAAAGGTAATAAGTTTTTGTCATAATTTTGATT
AACTACATAATCTGTATACTGTGTTTTCTCTTCTTTTGCAATGTATGTAA
TGATTAAATCATGAAAATTTAGTTCCTTCTAAAAATTAATTACCCAGCTG
GCACACAACGTTGTTTCAACGTACATCTAACGTTCATAACGTCCATAAAA
CGTTATATGAACGTTAAAACGTTATATGAACGTTAAATCAGTTATATGAA
CGTTAAAACAACGTTTTGTGCCAGCTGGAGAGTTGCGTTTTATTTTAAAG
CTCAAATGCTAATTTTCTAACATACTTAGACAAACCTTTTTCAGTCAGTA
AACAAAACTTATAAATGTCTTAAGTTTTTAAATTGAAGAGGGGTGTCTAG
AAAAAAGTTTTTAATTGGTTTCACATGATTTTTGTATAGTTTTAAAGAGT
AGTATTTCGAATAGAGAATGGAGTGAAAAAAATAGAATCCCCCCTGTATT
TATAATTTCAGATCCTGCGCACCAGATTCAACACAGCATACTATCTATGC
AAAAAGGAACGACCGTACAGTGACTTTTCAGATCTACTGAGTTTGGAGGA
GAAGAACGGTATGAAAAAGAGTCACAGTTACAGGAATGACAGAGCTGCTG
CTCAATTTATCGATACGGTTGGTAAGGAGATGAAAGATTCTTTTGTGAAT
GATCTTTTGAATGCCAACTACTATTCAGTATTAACCGATGGGAGTACCGA
TGCAAGCATCACAGAACAAGAGGTAGTATATGTTCTCTATCTATCTGGTG
GTGAGCCAAAAGTTAAGTTCTTAGGAATAGAGGCTCCGGATCAAGCAACT
GCTGATGGATTGAAAGAAAATATTGAAAAGGCTTTTCACAATATCGGGAT
AACTCCTATGTATGATTCCCTTGCCAATCTGTGTGTTGATGGAGCTTCTG
TTAATACAGGCATCCATAATGGTATTGGTGCTAAGATGCAAGTTCATGCA
CAATGGCTAACCATTATCCATTGTTTTAACCATAATCTGGAGCTAGCCGT
TAAAGACTGCTTTGATAAGACATTTTTTAAAGAAATCGACAACATGCTCC
TCAAATTATTTTACTTATATCGTAAAAGCCCGAAACGGCTACGTGAACTC
AAAAAGTTTGAGGAAATTTATGATGAATCGATTCCAAAACCATACAAATC
GTATGGAACAAGATGGATTGCCCACAAGATCAAAGCTATGGAGATTGTTT
TAAACAACTATGGTGTATACATCCAACATTTAGAATCGTTAGCACAAACA
GACAGTCAGGCTTTGAAGCGGGCTGAAATACAAGGAGAAGTGAAAAAATG
GAAAAATGCAAAGTTTCCCATACACTTAGCAATGTACATTGATGTTCTAA
CGCCACTTAAAGTGCTCAGCTTAGGTTTCCAGAAGGAAAAACATGACCCT
GTGCTTGCTGTCCGTCGAATTAAAGAGTTCAATTGGACAATGGCCAAACT
ACAAATTCTTGTTGACTCATCGTTAGAGGATGGTAACAATGACCGTCTGA
TTCACATCACCAAACTATTCAAGGAAGTTGCTGATGATGGAAACTATCAA
GGAGTAAAGTTATCAAATTTTACAGTCCATCAGAAATCGATCAGTGAGTC
ATTTGAAGAAATTATTACGAAGCTAGCGATCACAATGGAAAATCGATTTT
CAAACATGATGGCATCACCGGTTTTCGAAAACCTCGTGACTATCCTTGAC
GTATCATTATGGCCTGAGGAGGATAAAGGGCTGTTAGACTATGGTGACGA
AAGTGTGAATGCCTTAGTCGATCATTTTCGCTCTCTTATTGAGAAAAAGT
GCAATGTTTCTCAAATTTCGTCAGAATGGGATAGACTAAAGCTTTCCCTT
TCACCCAAATTGAAGGCAGGAGAGAAGGATTATCTTAAGGTTTGGAAAGA
AGTTTTTTCGAATAAGGGGCTTCAAGACGAATGTAAAAACGTCTTACATA
TCATAGAAATTCTTCTCATTACCCCGTTTACAAATGCCAAAATTGAAAGA
GTTTTCAGCAGAATGAATAGACTCCAGATTCCAGAAATCGCTTGGGTCAG
GCTAGATTGGAAACACAAATGCGCGTGGGAGAAGAAGGTGTCTCAATCGA
CGAATTTGAGGCCGACCTTTATATCAATAAATGGTTTCAGGAAAAGGTTC
ACAGGATAAACGGGGCAAAACCAAGAGATTATCCGTCAAAGCGTCGCTCT
GTTACATCTAAAAGTGGATATTCTGTCATTGATATTGCTCAGGTTACCCT
ATCTGACCTGAAGAACAGTGATGATGAATTTGAACAGTTTGATTGAGACA
TTTTGACTTTCAGTCACATGATGATAAACAAGACTTACAACTTACTACCA
CTTTAGCATTCGATTTTATTACTTTTTACTTTCTAGGTTATTCAGTTATT
TTCTACAAGAATATGGTTCTATAATATATAATATAATTTTACTACACAAA
TTTCCGTTCTCGTAGAGATTTCTCGAGACAGTAGAGACATAAATTTATTA
TTGTTTTGAACACAAAATTCCAAAAGAGGCATACAAATTTCTAAATTCTA
TCTACTTCACATTTATGTTGTAGATAGAACAATAGATCGTAAATATAGAT
CGCATTTAATCGCAAATTACATCGCAAAACTCCAAAAGTGCTTCGCAAAC
ATCTAAA Coding sequence (CDS) from alignment at sc0000122:83859..87165- >TCONS_00011226 ID=TCONS_00011226|Name=TCONS_00011226|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000122:83859..87165- (Clytia hemisphaerica)
ATGGAGTGGTTAATTTCATTCTTCGTTCATTTTCATACCAACATGGCTTC
GTTAACAACTGTAAATAAGTGGCAAAGTTCTCTAAAATGCAAGCTAGATA
TATTGGAGATTGTCGATGGAAAGGTCAGAAAAATGAAGTGTATTGTTTGC
TCTCAGTTTTCTGACAAGATTAAAGGAATGAAAGGATTCAGTCAGGCTTG
GGTAGACGGTACAGAATCTATAAAGAAAGATAGTTTGGATAAACACATCA
AAGGAGAGCCTCATAAACATGCAAAGGACCTTTCATTGAAAGTTTCCTTG
GGTGCAAAATCTTATAACAAGGAAATTGTTTCAAAAACACCGATTGGTAA
AGGTTTAACAAAAATGCAAGAAGAAGATGAAAAGGTAATAAGTTTTTGTC
ATAATTTTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011226-exon-sc0000122-1575043694:86304..87165 | TCONS_00011226-exon-sc0000122-1575043694:86304..87165 | Clytia hemisphaerica | exon |
| TCONS_00011226-exon-sc0000122-1575043694:83859..84613 | TCONS_00011226-exon-sc0000122-1575043694:83859..84613 | Clytia hemisphaerica | exon |
| TCONS_00011226-exon-sc0000122-1510915933:86304..87165 | TCONS_00011226-exon-sc0000122-1510915933:86304..87165 | Clytia hemisphaerica | exon |
| TCONS_00011226-exon-sc0000122-1510915933:83859..84613 | TCONS_00011226-exon-sc0000122-1510915933:83859..84613 | Clytia hemisphaerica | exon |
| TCONS_00011226-exon-sc0000122-1491911889:86304..87165 | TCONS_00011226-exon-sc0000122-1491911889:86304..87165 | Clytia hemisphaerica | exon |
| TCONS_00011226-exon-sc0000122-1491911889:83859..84613 | TCONS_00011226-exon-sc0000122-1491911889:83859..84613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000122 | supercontig | sc0000122:83859..87165 - |
Blast
The following BLAST results are available for this feature:
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