TCONS_00011226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011226
Unique NameTCONS_00011226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011226 ID=TCONS_00011226|Name=TCONS_00011226|organism=Clytia hemisphaerica|type=transcript|length=1617bp
GGGAAAAACCGATCTCAATCGGTGCGTTGCGAGTCAAAACCGGTGTGTGT
TTTTGCTgtatggaaatcgcttggcaggacacaatattagaacagaaaga
gaGCAAAGATAACCTACAAATAGaattgacgtcataaatgaaaatttgaa
taaagtaaatagcaaaaagttttttcatgtatttcatttgttttattcaA
AGCTATTGAAGCTCACTATTGCGTCATTTTTAGCTTAAATGGAGTGGTTA
ATTTCATTCTTCGTTCATTTTCATACCAACATGGCTTCGTTAACAACTGT
AAATAAGTGGCAAAGTTCTCTAAAATGCAAGCTAGATATATTGGAGATTG
TCGATGGAAAGGTCAGAAAAATGAAGTGTATTGTTTGCTCTCAGTTTTCT
GACAAGATTAAAGGAATGAAAGGATTCAGTCAGGCTTGGGTAGACGGTAC
AGAATCTATAAAGAAAGATAGTTTGGATAAACACATCAAAGGAGAGCCTC
ATAAACATGCAAAGGACCTTTCATTGAAAGTTTCCTTGGGTGCAAAATCT
TATAACAAggaaattgtttcaaaaacacCGATTGGTAAAGGTTTAACAAA
AATGcaagaagaagatgaaaaggTAATAAgtttttgtcataattttgatt
AACTACATAATCTGTATACTGTGTTTTCTCTTCTTTTGCAATGTATGTAA
TGATTAAATCATGAAAATTTAGTTCCTTCTAAAAATtaattacccagctg
gcacacaacgttgtttcaacgtacatctaacgttcataacgtccataaaa
cgttatatgaacgttaaaacgttatatgaacgttaaatcagttatatgaa
cgttaaaacaacTTTTTTCGAATAAGGGGCTTCAAGACGAATGTAAAAAC
GTCTTACATATCATAGAAATTCTTCTCATTACCCCGTTTACAAATGCCAA
AATTGAAAGAGTTTTCAGCAGAATGAATAGACTCCAGATTCCAGAAATCG
CTTGGGTCAGGCTAGATTGGAAACACAAATGCGCGTGGGAGAAGAAGGTG
TCTCAATCGACGAATTTGAGGCCGACCTTTATATCAATAAATGGTTTCAG
GAAAAGGTTCACAGGATAAACGGGGCAAAACCAAGAGATTATCCGTCAAA
GCGTCGCTCTGTTACATCTAAAAGTGGATATTCTGTCATTGATATTGCTC
AGGTTACCCTATCTGACCTGAAGAACAGTGATGATGAATTTGAACAGTTT
GATTGAGACATTTTGACTTTCAGTCACATGATGATAAACAAGACTTACAA
CTTACTACCACTTTAGCAttcgattttattactttttactttCTAGGTTA
TTCAGTTATTTTCTACAAGAATATGGttctataatatataatataatttt
actaCACAAATTTCCGTTCTCGTAGAGATTTCTCGAGACAGTAGAGACAt
aaatttattattgttttgaacACAAAATTCCAAAAGAGGCATACAAATTT
CTAAATTCTATCTACTTCACATTTATGTTGTAGATAGAACAATAGATCGT
AAATATAGATCGCATTTAATCGCAAATTACATCGCAAAACTCCAAAAGTG
CTTCGcaaacatctaaa
Run BLAST on NCBI

protein sequence of TCONS_00011226-protein

>TCONS_00011226-protein ID=TCONS_00011226-protein|Name=TCONS_00011226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MEWLISFFVHFHTNMASLTTVNKWQSSLKCKLDILEIVDGKVRKMKCIVC
SQFSDKIKGMKGFSQAWVDGTESIKKDSLDKHIKGEPHKHAKDLSLKVSL
GAKSYNKEIVSKTPIGKGLTKMQEEDEKVISFCHNFD
Run BLAST on NCBI

transcript from alignment at sc0000122:83859..87165-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011226 ID=TCONS_00011226|Name=TCONS_00011226|organism=Clytia hemisphaerica|type=transcript|length=3307bp|location=Sequence derived from alignment at sc0000122:83859..87165- (Clytia hemisphaerica)
GGGAAAAACCGATCTCAATCGGTGCGTTGCGAGTCAAAACCGGTGTGTGT TTTTGCTGTATGGAAATCGCTTGGCAGGACACAATATTAGAACAGAAAGA GAGCAAAGATAACCTACAAATAGAATTGACGTCATAAATGAAAATTTGAA TAAAGTAAATAGCAAAAAGTTTTTTCATGTATTTCATTTGTTTTATTCAA AGCTATTGAAGCTCACTATTGCGTCATTTTTAGCTTAAATGGAGTGGTTA ATTTCATTCTTCGTTCATTTTCATACCAACATGGCTTCGTTAACAACTGT AAATAAGTGGCAAAGTTCTCTAAAATGCAAGCTAGATATATTGGAGATTG TCGATGGAAAGGTCAGAAAAATGAAGTGTATTGTTTGCTCTCAGTTTTCT GACAAGATTAAAGGAATGAAAGGATTCAGTCAGGCTTGGGTAGACGGTAC AGAATCTATAAAGAAAGATAGTTTGGATAAACACATCAAAGGAGAGCCTC ATAAACATGCAAAGGACCTTTCATTGAAAGTTTCCTTGGGTGCAAAATCT TATAACAAGGAAATTGTTTCAAAAACACCGATTGGTAAAGGTTTAACAAA AATGCAAGAAGAAGATGAAAAGGTAATAAGTTTTTGTCATAATTTTGATT AACTACATAATCTGTATACTGTGTTTTCTCTTCTTTTGCAATGTATGTAA TGATTAAATCATGAAAATTTAGTTCCTTCTAAAAATTAATTACCCAGCTG GCACACAACGTTGTTTCAACGTACATCTAACGTTCATAACGTCCATAAAA CGTTATATGAACGTTAAAACGTTATATGAACGTTAAATCAGTTATATGAA CGTTAAAACAACGTTTTGTGCCAGCTGGAGAGTTGCGTTTTATTTTAAAG CTCAAATGCTAATTTTCTAACATACTTAGACAAACCTTTTTCAGTCAGTA AACAAAACTTATAAATGTCTTAAGTTTTTAAATTGAAGAGGGGTGTCTAG AAAAAAGTTTTTAATTGGTTTCACATGATTTTTGTATAGTTTTAAAGAGT AGTATTTCGAATAGAGAATGGAGTGAAAAAAATAGAATCCCCCCTGTATT TATAATTTCAGATCCTGCGCACCAGATTCAACACAGCATACTATCTATGC AAAAAGGAACGACCGTACAGTGACTTTTCAGATCTACTGAGTTTGGAGGA GAAGAACGGTATGAAAAAGAGTCACAGTTACAGGAATGACAGAGCTGCTG CTCAATTTATCGATACGGTTGGTAAGGAGATGAAAGATTCTTTTGTGAAT GATCTTTTGAATGCCAACTACTATTCAGTATTAACCGATGGGAGTACCGA TGCAAGCATCACAGAACAAGAGGTAGTATATGTTCTCTATCTATCTGGTG GTGAGCCAAAAGTTAAGTTCTTAGGAATAGAGGCTCCGGATCAAGCAACT GCTGATGGATTGAAAGAAAATATTGAAAAGGCTTTTCACAATATCGGGAT AACTCCTATGTATGATTCCCTTGCCAATCTGTGTGTTGATGGAGCTTCTG TTAATACAGGCATCCATAATGGTATTGGTGCTAAGATGCAAGTTCATGCA CAATGGCTAACCATTATCCATTGTTTTAACCATAATCTGGAGCTAGCCGT TAAAGACTGCTTTGATAAGACATTTTTTAAAGAAATCGACAACATGCTCC TCAAATTATTTTACTTATATCGTAAAAGCCCGAAACGGCTACGTGAACTC AAAAAGTTTGAGGAAATTTATGATGAATCGATTCCAAAACCATACAAATC GTATGGAACAAGATGGATTGCCCACAAGATCAAAGCTATGGAGATTGTTT TAAACAACTATGGTGTATACATCCAACATTTAGAATCGTTAGCACAAACA GACAGTCAGGCTTTGAAGCGGGCTGAAATACAAGGAGAAGTGAAAAAATG GAAAAATGCAAAGTTTCCCATACACTTAGCAATGTACATTGATGTTCTAA CGCCACTTAAAGTGCTCAGCTTAGGTTTCCAGAAGGAAAAACATGACCCT GTGCTTGCTGTCCGTCGAATTAAAGAGTTCAATTGGACAATGGCCAAACT ACAAATTCTTGTTGACTCATCGTTAGAGGATGGTAACAATGACCGTCTGA TTCACATCACCAAACTATTCAAGGAAGTTGCTGATGATGGAAACTATCAA GGAGTAAAGTTATCAAATTTTACAGTCCATCAGAAATCGATCAGTGAGTC ATTTGAAGAAATTATTACGAAGCTAGCGATCACAATGGAAAATCGATTTT CAAACATGATGGCATCACCGGTTTTCGAAAACCTCGTGACTATCCTTGAC GTATCATTATGGCCTGAGGAGGATAAAGGGCTGTTAGACTATGGTGACGA AAGTGTGAATGCCTTAGTCGATCATTTTCGCTCTCTTATTGAGAAAAAGT GCAATGTTTCTCAAATTTCGTCAGAATGGGATAGACTAAAGCTTTCCCTT TCACCCAAATTGAAGGCAGGAGAGAAGGATTATCTTAAGGTTTGGAAAGA AGTTTTTTCGAATAAGGGGCTTCAAGACGAATGTAAAAACGTCTTACATA TCATAGAAATTCTTCTCATTACCCCGTTTACAAATGCCAAAATTGAAAGA GTTTTCAGCAGAATGAATAGACTCCAGATTCCAGAAATCGCTTGGGTCAG GCTAGATTGGAAACACAAATGCGCGTGGGAGAAGAAGGTGTCTCAATCGA CGAATTTGAGGCCGACCTTTATATCAATAAATGGTTTCAGGAAAAGGTTC ACAGGATAAACGGGGCAAAACCAAGAGATTATCCGTCAAAGCGTCGCTCT GTTACATCTAAAAGTGGATATTCTGTCATTGATATTGCTCAGGTTACCCT ATCTGACCTGAAGAACAGTGATGATGAATTTGAACAGTTTGATTGAGACA TTTTGACTTTCAGTCACATGATGATAAACAAGACTTACAACTTACTACCA CTTTAGCATTCGATTTTATTACTTTTTACTTTCTAGGTTATTCAGTTATT TTCTACAAGAATATGGTTCTATAATATATAATATAATTTTACTACACAAA TTTCCGTTCTCGTAGAGATTTCTCGAGACAGTAGAGACATAAATTTATTA TTGTTTTGAACACAAAATTCCAAAAGAGGCATACAAATTTCTAAATTCTA TCTACTTCACATTTATGTTGTAGATAGAACAATAGATCGTAAATATAGAT CGCATTTAATCGCAAATTACATCGCAAAACTCCAAAAGTGCTTCGCAAAC ATCTAAA

Coding sequence (CDS) from alignment at sc0000122:83859..87165-

>TCONS_00011226 ID=TCONS_00011226|Name=TCONS_00011226|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000122:83859..87165- (Clytia hemisphaerica)
ATGGAGTGGTTAATTTCATTCTTCGTTCATTTTCATACCAACATGGCTTC
GTTAACAACTGTAAATAAGTGGCAAAGTTCTCTAAAATGCAAGCTAGATA
TATTGGAGATTGTCGATGGAAAGGTCAGAAAAATGAAGTGTATTGTTTGC
TCTCAGTTTTCTGACAAGATTAAAGGAATGAAAGGATTCAGTCAGGCTTG
GGTAGACGGTACAGAATCTATAAAGAAAGATAGTTTGGATAAACACATCA
AAGGAGAGCCTCATAAACATGCAAAGGACCTTTCATTGAAAGTTTCCTTG
GGTGCAAAATCTTATAACAAGGAAATTGTTTCAAAAACACCGATTGGTAA
AGGTTTAACAAAAATGCAAGAAGAAGATGAAAAGGTAATAAGTTTTTGTC
ATAATTTTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006283XLOC_006283Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011226-proteinTCONS_00011226-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011226-exon-sc0000122-1575043694:86304..87165TCONS_00011226-exon-sc0000122-1575043694:86304..87165Clytia hemisphaericaexon
TCONS_00011226-exon-sc0000122-1575043694:83859..84613TCONS_00011226-exon-sc0000122-1575043694:83859..84613Clytia hemisphaericaexon
TCONS_00011226-exon-sc0000122-1510915933:86304..87165TCONS_00011226-exon-sc0000122-1510915933:86304..87165Clytia hemisphaericaexon
TCONS_00011226-exon-sc0000122-1510915933:83859..84613TCONS_00011226-exon-sc0000122-1510915933:83859..84613Clytia hemisphaericaexon
TCONS_00011226-exon-sc0000122-1491911889:86304..87165TCONS_00011226-exon-sc0000122-1491911889:86304..87165Clytia hemisphaericaexon
TCONS_00011226-exon-sc0000122-1491911889:83859..84613TCONS_00011226-exon-sc0000122-1491911889:83859..84613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122supercontigsc0000122:83859..87165 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.597459 0.247336 0.380128 0.511349 5.13418 3.69723 2.60348 4.44515 1.19379 1.07084 0.501101 1.37274 1.31863 0.90267 0.40086 1.19043 0.553334 0.72067 0.79816 1.30262 2.19838 2.44883 0.274303 0.585481 1.35198 1.66337 2.25458 2.31566 1.54861 2.07414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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