TCONS_00011123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011123
Unique NameTCONS_00011123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011123 ID=TCONS_00011123|Name=TCONS_00011123|organism=Clytia hemisphaerica|type=transcript|length=4272bp
CTGATTGAACGGGGCCACCAACCGACGCTGATACAGTGAAGTCAATAGAG
CTGTCATCTTTATCACTCCCTTTCGACAATTCTTTCTTGCTTTGGTACGG
ATCCAACGCTCTTCGTGACTCTTTTCGTGATCGTGAGCCGCCAGTATGTG
ATCGGGAACTACCGGTGTGCGATCGGGAGCTATCGGTATGCGATCGGGAA
CTACCAGTGTGCGATCGGGAACTACCGTTGTGCGATCTGGAACTACCTGT
GTTCGAACGGGAGTTGCCAGTATGCGATCGGGAGTTTAAGGCATGTGATT
GTGAGCCACCAGTGTGCGACCGTGAATCGCCAGTATGAGATCGTGACGTT
CTGGTGTGTGAGCCTTTCTTTCTGGGCGATCGTTCGTTCTCTTTCGATGC
CGACTCGACAGCTTCGATCATGAAGATTGGCATTGAATCTACACCGTTGT
CAGATGGTTCACCTATTCGATGCGAGAAATTTTGATGTAGAGAATCAAAG
GAATGATGTGAATGGCCAGCAACGtcttttctttgaatttctttcatTCT
AGAAGAGCCTTTTGGTGACAACTCATTATCTTTTGCAACAGTTTTATTAT
CTTTGACCTTTTGAAGAATCAATGCACTCTTTTTCTTTAAACCATGAGTG
CTGTTCCCACTCTTTACATTTGAACGTGATTTCCCTATGACAATACTATT
AGGTGATAACAACATAGCACTCTGTTGTCCAGGCTTAACAGTATGATTAC
TAGGGCTCAAAGTAGCCGTGGAGTGAGTGCCGTGTTTATTAGGGTTCAAA
GTAGCCGTGGAGTGAGTGCCGTGTTTACTAGGGTTCAAAGTAGCCGTGGA
GTGAGTATTTTTACTCTTATGGTCGTCCATCTTATGTTGACTTTTAGGAG
AATGTTTCGATTTAGAATGCCTACTCAAAGAATCGTGAGAGGTGTGTGAT
CTATCATATTCTCTGATTCTGTGTGAATTTTTTGGACTGATCTCGTGACG
ATGTTTAGAATCTGCGGTGAGCACAACTGCCACATTACTCATGTCCGTGC
ACTGCACAATATCAGGTGAGCCATGTTCCACGATCAAACTTGAGGTATTG
GCTTCTGTCGTGCTAAATGCTGGCAATGCAGCAATGCTTTGGGATGCTTT
TTTTCCATCTGAACCTTGATGTAAACTTTTATGAGAACTGTCTTTTGaga
tttgatgaatttcagaTTCCTCATCAGTGACTTTTGACCGTGACTTTGTG
CCATGCCTTTTAAGTTCGTGAACTCTTCGTAGACTTTCCGGAGACGTTTT
CTTCGACTTGGATAATCCAGGAGTACTAGGTTCCGCACTCAAAGCGAGTG
AACTTTCGGTTACAATACCTTCGACTATTGGTACATTTTTAtgcgatttc
tttgttttcgaagATGCAGAGATTTCAGCATTCGAAACCAAGGAGATAGC
GCTGTCAATATCATGCCTCCGTGAGCTTTTGGGTgaagatttctttttca
ttgaagGTTCGCTAACTTCAGCATTCGAAGCCAGGGACATAGTGCTTTCA
ACATCATGCCTTCGTGAGCTTTTGGGTgaagatttctttttcattgaagG
TTCGCTAACTTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCAT
GCCTTCGTGAGCTTTTGGGTgaagatttctttttcattgaagGTTCGCTA
ACTTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCATGCCTTCG
TGAGCTTTTGGGTGAAGATTTCTTTGTCTTGGAAGGTCCAGGGATTTCAG
CATTCGAAGCCAGGGACAAGGAGCTGTCGATATCATGCCTCCGTGAGCTT
TTGGGTGAAGATTTCTTTTTCGTTGAAGGTTCGTTAACTTCAGCACTCGA
AGTCAGGGACATAGCATTATCAATATCATGCCTCCGTGGACTTCTAGGtg
aagatttcttttttattgaagATCCAGGGATTTCAGCATTCGAAGCCAAA
GACATAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGGGTgaagattt
ctttttcattgaagGTTCGCTAACTTCAGGATTCGAAGCCAGGGACATTG
CATTATCAATATCATACCTCCGTGAACTTTTAGGTGAAGATTTCTTTTTT
ACTGAAGATCCAGAGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTC
AACATCATGCCTCCGTGAACTTCTAGGTGAAGATTTCTTTTTCCTTGAAG
ACTCAGAAACTTCAGCATCATTTCGTTTAGACGTCGATTTTTTTCGCTTG
AATTCTTCAGGGACATCAAAAGAAATAGAAATGCAACTTTCGTCTGATAA
GTTTTCTTCTTCGCGTAGCGTTGTAGGAAGCTGTAGATCTTTGTTTCCAG
TAAGCTTTACAATATCACTCTCCGTAAAGCCGATAGAACTTTTTTGTCCC
GTTCTTCTAGTAGAGCTACGAGTAGTACCTTTCCCGAATTCGCTTAGTTG
ATGTTCATTAGTGCTTTTTTTACGTTTATGATCTTTACGAGAGTCTTTCT
TTTTCCCAGTAGCACTACCTTCAGATAACAATTGAGCTGAGCTTTGTCCA
GATATTTCTGAAGAATGTTTGCTAGTATGACCGTCTTTATGTTTGCGATG
ACTGCGATGAGAATGTTCTTTTGTAGATTCCGTAGATTCAGCAGCTTCAA
GTTTCCTTTCGGCTGACTTTGACCTTAAACGGGAACCTTCTTTCTTTAGC
TCTTCCACTCTACGAGGACTCTTTGGTgacgccattttgatttttgagga
agaTGGGATCGAAGCTACACCAGCAATAGCCTCGTCTTTATTGTTGCGTC
TAGTGctactttttgtttctttaattttaCTACGTGTACTTCCAACTTTA
GAATGGACTTGAAGCACTCCTTCGTCAAGCACGGGGGCTGCTGAGTTTAC
CGCGTGACTTGATGCTCGTGAAAGCGAGACAGCGCTATTTCGCATGGTCT
CTTCAGCCGCCTCCATTGCACGCTTCGAACGGCGGATTTCCAGATCCTCG
CGTTGTTTTTGTAAGTCACTTCTCACACTTTTCAAGCGATTCAACGTGTC
TTTAGAACCTTTACCAGTCATTGACGATTGTTGCTCAGGTTCTTCTGGGT
TGGTGAATATTTCAGGATACTGTTGACGAAGCTCGTGttgtttcttttga
attttctgCTGATCTGTTTTGGATGATTTATTACGAGTTGGAGATTTAGA
ACGGTGTTTCTTCGATTCTTCGCGCTCCAATGCTCTTTCAGACAAACCTT
GCGTTTCTTCTGCTACTTCTAGTTGATTTTGGATGTCTGTGAACGAGGTT
TGAGTTGCTATTTCCAGTTCGTGATGACTCGTTTGTGTTGAGTTTGTATG
CTCTTTGACTCGAGTCTGTGTAGATGCACGATGCTGCTTCATCTTTGTTT
GTGTGCTTGAAGAGTTATACTCAGAATTGTCTGTCTGTGTAGCAGATTCA
GCGTCTTCTGAATGTTGTGTTTGTGTTCCAGTATTGGCCTCTTCTGATAT
TGGAGTTTGAGTGGAAGCTTTATGTCCTTTGAAATTAACATTGAACTTGG
TCTGTGTTTTAGTCGAATGTTGTTTCAATTGATGTGTTTGTGTAGCGCTA
TCAACATCTTCAGACACTGTAGTCTGTGTGGAGATGTTCGACTCTTCAGT
CACGGTCTGCGTAGATGTATCACATCCTGGGGATGTTGTGCTTTCACCCG
TTAATGGGTATTGTCGAAGAGAGCTAGAACAAATGCGGGAAATagtcggg
gaaacattggaggATCGGTTTCTAGAGCTTGCAGTTTGATTAGAATTCAG
AGTTGAGACTTCTAACTCTGAATCGGGTTTTACTTGTCTCATAGATGTAT
CGGGGATGGGTAGACTACCATCTGGCATGGATTCCAAGCCAGGGCTTCCG
GTAGATACTGCCACTGTCACAATAGTGCTCGGAGAATCTGCTCCCATAGC
TTGCGGTAGATACACATTGACGTGTGGAGCTTGGATTCTTTGAGCTTCAG
TGATAAGTTGTTGGTTGGTCATTTTGTTGGCTAGGTGTCTTTTCTGTAGT
TCAGCAACACGTTTTTGATGTTCCAATAAGCGTTGGTTGTATTCAAGATT
CTGTTGAGTCAACGGATTGGTTTGTTGTGAAGTTTGTTGATTGTTGGCAA
GATTTTGTTGAGAAGGCACAGTGATTCGAGGGAGTTGTTCCATATCTTCT
GAGATTGTCGTTTTTTCGGGTA
Run BLAST on NCBI

transcript from alignment at sc0000121:93370..98137-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011123 ID=TCONS_00011123|Name=TCONS_00011123|organism=Clytia hemisphaerica|type=transcript|length=4768bp|location=Sequence derived from alignment at sc0000121:93370..98137- (Clytia hemisphaerica)
CTGATTGAACGGGGCCACCAACCGACGCTGATACAGTGAAGTCAATAGAG CTGTCATCTTTATCACTCCCTTTCGACAATTCTTTCTTGCTTTGGTACGG ATCCAACGCTCTTCGTGACTCTTTTCGTGATCGTGAGCCGCCAGTATGTG ATCGGGAACTACCGGTGTGCGATCGGGAGGTATGTGATCGGGAACTACCA GTGTGCGATCGGGAACTACCAGTGTGCGATCGGGAACTACCGGTGTGCGA TCGGGAACTACCGGTGTGCGATCGGGAACTACCTGTGTGNGTGCGATCGG GAGCTATCGGTATGCGATCGGGAACTACCAGTGTGCGATCGGGAACTACC GTTGTGCGATCTGGAACTACCTGTGTTCGAACGGGAGTTGCCAGTATGCG ATCGGGAGTTTAAGGCATGTGATTGTGAGCCACCAGTGTGCGACCGTGAA TCGCCAGTATGAGATCGTGACGTTCTGGTGTGTGAGCCTTTCTTTCTGGG CGATCGTTCGTTCTCTTTCGATGCCGACTCGACAGCTTCGATCATGAAGA TTGGCATTGAATCTACACCGTTGTCAGATGGTTCACCTATTCGATGCGAG AAATTTTGATGTAGAGAATCAAAGGAATGATGTGAATGGCCAGCAACGTC TTTTCTTTGAATTTCTTTCATTCTAGAAGAGCCTTTTGGTGACAACTCAT TATCTTTTGCAACAGTTTTATTATCTTTGACCTTTTGAAGAATCAATGCA CTCTTTTTCTTTAAACCATGAGTGCTGTTCCCACTCTTTACATTTGAACG TGATTTCCCTATGACAATACTATTAGGTGATAACAACATAGCACTCTGTT GTCCAGGCTTAACAGTATGATTACTAGGGCTCAAAGTAGCCGTGGAGTGA GTGCCGTGTTTATTAGGGTTCAAAGTAGCCGTGGAGTGAGTGCCGTGTTT ACTAGGGTTCAAAGTAGCCGTGGAGTGAGTATTTTTACTCTTATGGTCGT CCATCTTATGTTGACTTTTAGGAGAATGTTTCGATTTAGAATGCCTACTC AAAGAATCGTGAGAGGTGTGTGATCTATCATATTCTCTGATTCTGTGTGA ATTTTTTGGACTGATCTCGTGACGATGTTTAGAATCTGCGGTGAGCACAA CTGCCACATTACTCATGTCCGTGCACTGCACAATATCAGGTGAGCCATGT TCCACGATCAAACTTGAGGTATTGGCTTCTGTCGTGCTAAATGCTGGCAA TGCAGCAATGCTTTGGGATGCTTTTTTTCCATCTGAACCTTGATGTAAAC TTTTATGAGAACTGTCTTTTGAGATTTGATGAATTTCAGATTCCTCATCA GTGACTTTTGACCGTGACTTTGTGCCATGCCTTTTAAGTTCGTGAACTCT TCGTAGACTTTCCGGAGACGTTTTCTTCGACTTGGATAATCCAGGAGTAC TAGGTTCCGCACTCAAAGCGAGTGAACTTTCGGTTACAATACCTTCGACT ATTGGTACATTTTTATGCGATTTCTTTGTTTTCGAAGATGCAGAGATTTC AGCATTCGAAACCAAGGAGATAGCGCTGTCAATATCATGCCTCCGTGAGC TTTTGGGTGAAGATTTCTTTTTCATTGAAGGTTCGCTAACTTCAGCATTC GAAGCCAGGGACATAGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGG TGAAGATTTCTTTTTCATTGAAGGTTCGCTAACTTCAGCATTCGAAGCCA AGGACATAGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGGTGAAGAT TTCTTTTTCATTGAAGGTTCGCTAACTTCAGCATTCGAAGCCAAGGACAT AGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGGTGAAGATTTCTTTG TCTTGGAAGGTCCAGGGATTTCAGCATTCGAAGCCAGGGACAAGGAGCTG TCGATATCATGCCTCCGTGAGCTTTTGGGTGAAGATTTCTTTTTCGTTGA AGGTTCGTTAACTTCAGCACTCGAAGTCAGGGACATAGCATTATCAATAT CATGCCTCCGTGGACTTCTAGGTGAAGATTTCTTTTTTATTGAAGGTTCG CTAACTTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCATGCCT TCGTGAGCTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTT CAGCATTCGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCGTGAA CTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTTCAGCATT CGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGG GTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTTCAGCATTCGAAGCC AAAGACATAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGGGTGAAGA TTTCTTTGTCTTGGAAGATCCAGGGATTTCAGCATTCGAAGCCAAAGACA TAGCGCTGTCAATATCATGTTTCCGTGAACTTTTGGGTGAAGATTTCTTT TTCATTGAAGGTTCGCTAACTTCAGGATTCGAAGCCAGGGACATTGCATT ATCAATATCATACCTCCGTGAACTTTTAGGTGAAGATTTCTTTTTTACTG AAGATCCAGAGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAACA TCATGCCTCCGTGAACTTCTAGGTGAAGATTTCTTTTTCCTTGAAGACTC AGAAACTTCAGCATCATTTCGTTTAGACGTCGATTTTTTTCGCTTGAATT CTTCAGGGACATCAAAAGAAATAGAAATGCAACTTTCGTCTGATAAGTTT TCTTCTTCGCGTAGCGTTGTAGGAAGCTGTAGATCTTTGTTTCCAGTAAG CTTTACAATATCACTCTCCGTAAAGCCGATAGAACTTTTTTGTCCCGTTC TTCTAGTAGAGCTACGAGTAGTACCTTTCCCGAATTCGCTTAGTTGATGT TCATTAGTGCTTTTTTTACGTTTATGATCTTTACGAGAGTCTTTCTTTTT CCCAGTAGCACTACCTTCAGATAACAATTGAGCTGAGCTTTGTCCAGATA TTTCTGAAGAATGTTTGCTAGTATGACCGTCTTTATGTTTGCGATGACTG CGATGAGAATGTTCTTTTGTAGATTCCGTAGATTCAGCAGCTTCAAGTTT CCTTTCGGCTGACTTTGACCTTAAACGGGAACCTTCTTTCTTTAGCTCTT CCACTCTACGAGGACTCTTTGGTGACGCCATTTTGATTTTTGAGGAAGAT GGGATCGAAGCTACACCAGCAATAGCCTCGTCTTTATTGTTGCGTCTAGT GCTACTTTTTGTTTCTTTAATTTTACTACGTGTACTTCCAACTTTAGAAT GGACTTGAAGCACTCCTTCGTCAAGCACGGGGGCTGCTGAGTTTACCGCG TGACTTGATGCTCGTGAAAGCGAGACAGCGCTATTTCGCATGGTCTCTTC AGCCGCCTCCATTGCACGCTTCGAACGGCGGATTTCCAGATCCTCGCGTT GTTTTTGTAAGTCACTTCTCACACTTTTCAAGCGATTCAACGTGTCTTTA GAACCTTTACCAGTCATTGACGATTGTTGCTCAGGTTCTTCTGGGTTGGT GAATATTTCAGGATACTGTTGACGAAGCTCGTGTTGTTTCTTTTGAATTT TCTGCTGATCTGTTTTGGATGATTTATTACGAGTTGGAGATTTAGAACGG TGTTTCTTCGATTCTTCGCGCTCCAATGCTCTTTCAGACAAACCTTGCGT TTCTTCTGCTACTTCTAGTTGATTTTGGATGTCTGTGAACGAGGTTTGAG TTGCTATTTCCAGTTCGTGATGACTCGTTTGTGTTGAGTTTGTATGCTCT TTGACTCGAGTCTGTGTAGATGCACGATGCTGCTTCATCTTTGTTTGTGT GCTTGAAGAGTTATACTCAGAATTGTCTGTCTGTGTAGCAGATTCAGCGT CTTCTGAATGTTGTGTTTGTGTTCCAGTATTGGCCTCTTCTGATATTGGA GTTTGAGTGGAAGCTTTATGTCCTTTGAAATTAACATTGAACTTGGTCTG TGTTTTAGTCGAATGTTGTTTCAATTGATGTGTTTGTGTAGCGCTATCAA CATCTTCAGACACTGTAGTCTGTGTGGAGATGTTCGACTCTTCAGTCACG GTCTGCGTAGATGTATCACATCCTGGGGATGTTGTGCTTTCACCCGTTAA TGGGTATTGTCGAAGAGAGCTAGAACAAATGCGGGAAATAGTCGGGGAAA CATTGGAGGATCGGTTTCTAGAGCTTGCAGTTTGATTAGAATTCAGAGTT GAGACTTCTAACTCTGAATCGGGTTTTACTTGTCTCATAGATGTATCGGG GATGGGTAGACTACCATCTGGCATGGATTCCAAGCCAGGGCTTCCGGTAG ATACTGCCACTGTCACAATAGTGCTCGGAGAATCTGCTCCCATAGCTTGC GGTAGATACACATTGACGTGTGGAGCTTGGATTCTTTGAGCTTCAGTGAT AAGTTGTTGGTTGGTCATTTTGTTGGCTAGGTGTCTTTTCTGTAGTTCAG CAACACGTTTTTGATGTTCCAATAAGCGTTGGTTGTATTCAAGATTCTGT TGAGTCAACGGATTGGTTTGTTGTGAAGTTTGTTGATTGTTGGCAAGATT TTGTTGAGAAGGCACAGTGATTCGAGGGAGTTGTTCCATATCTTCTGAGA TTGTCGTTTTTTCGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006228XLOC_006228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011123-exon-sc0000121-1575043694:97959..98137TCONS_00011123-exon-sc0000121-1575043694:97959..98137Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1575043694:96043..97834TCONS_00011123-exon-sc0000121-1575043694:96043..97834Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1575043694:93370..95670TCONS_00011123-exon-sc0000121-1575043694:93370..95670Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1510915933:97959..98137TCONS_00011123-exon-sc0000121-1510915933:97959..98137Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1510915933:96043..97834TCONS_00011123-exon-sc0000121-1510915933:96043..97834Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1510915933:93370..95670TCONS_00011123-exon-sc0000121-1510915933:93370..95670Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1491911889:97959..98137TCONS_00011123-exon-sc0000121-1491911889:97959..98137Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1491911889:96043..97834TCONS_00011123-exon-sc0000121-1491911889:96043..97834Clytia hemisphaericaexon
TCONS_00011123-exon-sc0000121-1491911889:93370..95670TCONS_00011123-exon-sc0000121-1491911889:93370..95670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:93370..98137 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.00466885 0 0.124661 0.13317 0 0 0 0 0.0194899 0 0.0255625 0 0.00649981 0 0 0.0053966 0 0 0 0 0 0 0.605072 0.135305 2.8002e-10 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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