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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011121 ID=TCONS_00011121|Name=TCONS_00011121|organism=Clytia hemisphaerica|type=transcript|length=4535bp
CGCTGATACAGTGAAGTCAATAGAGCTGTCATCTTTATCACTCCCTTTCG
ACAATTCTTTCTTGCTTTGGTACGGATCCAACGCTCTTCGTGACTCTTTT
CGTGATCGTGAGCCGCCAGTATGTGATCGGGAACTACCGGTGTGCGATCG
GGAGTTGCCAGTATGCGATCGGGAGTTTAAGGCATGTGATTGTGAGCCAC
CAGTGTGCGACCGTGAATCGCCAGTATGAGATCGTGACGTTCTGGTGTGT
GAGCCTTTCTTTCTGGGCGATCGTTCGTTCTCTTTCGATGCCGACTCGAC
AGCTTCGATCATGAAGATTGGCATTGAATCTACACCGTTGTCAGATGGTT
CACCTATTCGATGCGAGAAATTTTGATGTAGAGAATCAAAGGAATGATGT
GAATGGCCAGCAACGtcttttctttgaatttctttcatTCTAGAAGAGCC
TTTTGGTGACAACTCATTATCTTTTGCAACAGTTTTATTATCTTTGACCT
TTTGAAGAATCAATGCACTCTTTTTCTTTAAACCATGAGTGCTGTTCCCA
CTCTTTACATTTGAACGTGATTTCCCTATGACAATACTATTAGGTGATAA
CAACATAGCACTCTGTTGTCCAGGCTTAACAGTATGATTACTAGGGCTCA
AAGTAGCCGTGGAGTGAGTGCCGTGTTTATTAGGGTTCAAAGTAGCCGTG
GAGTGAGTGCCGTGTTTACTAGGGTTCAAAGTAGCCGTGGAGTGAGTATT
TTTACTCTTATGGTCGTCCATCTTATGTTGACTTTTAGGAGAATGTTTCG
ATTTAGAATGCCTACTCAAAGAATCGTGAGAGGTGTGTGATCTATCATAT
TCTCTGATTCTGTGTGAATTTTTTGGACTGATCTCGTGACGATGTTTAGA
ATCTGCGGTGAGCACAACTGCCACATTACTCATGTCCGTGCACTGCACAA
TATCAGGTGAGCCATGTTCCACGATCAAACTTGAGGTATTGGCTTCTGTC
GTGCTAAATGCTGGCAATGCAGCAATGCTTTGGGATGCTTTTTTTCCATC
TGAACCTTGATGTAAACTTTTATGAGAACTGTCTTTTGagatttgatgaa
tttcagaTTCCTCATCAGTGACTTTTGACCGTGACTTTGTGCCATGCCTT
TTAAGTTCGTGAACTCTTCGTAGACTTTCCGGAGACGTTTTCTTCGACTT
GGATAATCCAGGAGTACTAGGTTCCGCACTCAAAGCGAGTGAACTTTCGG
TTACAATACCTTCGACTATTGGTACATTTTTAtgcgatttctttgttttc
gaagATGCAGAGATTTCAGCATTCGAAACCAAGGAGATAGCGCTGTCAAT
ATCATGCCTCCGTGAGCTTTTGGGTgaagatttctttttcattgaagGTT
CGCTAACTTCAGCATTCGAAGCCAGGGACATAGTGCTTTCAACATCATGC
CTTCGTGAGCTTTTGGGTgaagatttctttttcattgaagGTTCGCTAAC
TTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCATGCCTTCGTG
AGCTTTTGGGTgaagatttctttttcattgaagGTTCGCTAACTTCAGCA
TTCGAAGCCAAGGACATAGTGCTTTCAACATCATGCCTTCGTGAGCTTTT
GGGTGAAGATTTCTTTGTCTTGGAAGGTCCAGGGATTTCAGCATTCGAAG
CCAGGGACAAGGAGCTGTCGATATCATGCCTCCGTGAGCTTTTGGGTGAA
GATTTCTTTTTCGTTGAAGGTTCGTTAACTTCAGCACTCGAAGTCAGGGA
CATAGCATTATCAATATCATGCCTCCGTGGACTTCTAGGtgaagatttct
tttttattgaagGTTCGCTAACTTCAGCATTCGAAGCCAAGGACATAGTG
CTTTCAACATCATGCCTTCGTGAGCTTTTGGGTGAAGATTTCTTTGTCTT
GGAAGATCCAGGGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAA
TATCATGTTTCCGTGAACTTTTGGGTGAAGATTTCTTTGTCTTGGAAGAT
CCAGGGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAATATCATG
TTTCCGTGAACTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGGA
TTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCGT
GAACTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGGATTTCAGC
ATTCGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCGTGAACTTT
TGGGTgaagatttctttttcattgaagGTTCGCTAACTTCAGGATTCGAA
GCCAGGGACATTGCATTATCAATATCATACCTCCGTGAACTTTTAGGTGA
AGATTTCTTTTTTACTGAAGATCCAGAGATTTCAGCATTCGAAGCCAAAG
ACATAGCGCTGTCAACATCATGCCTCCGTGAACTTCTAGGTGAAGATTTC
TTTTTCCTTGAAGACTCAGAAACTTCAGCATCATTTCGTTTAGACGTCGA
TTTTTTTCGCTTGAATTCTTCAGGGACATCAAAAGAAATAGAAATGCAAC
TTTCGTCTGATAAGTTTTCTTCTTCGCGTAGCGTTGTAGGAAGCTGTAGA
TCTTTGTTTCCAGTAAGCTTTACAATATCACTCTCCGTAAAGCCGATAGA
ACTTTTTTGTCCCGTTCTTCTAGTAGAGCTACGAGTAGTACCTTTCCCGA
ATTCGCTTAGTTGATGTTCATTAGTGCTTTTTTTACGTTTATGATCTTTA
CGAGAGTCTTTCTTTTTCCCAGTAGCACTACCTTCAGATAACAATTGAGC
TGAGCTTTGTCCAGATATTTCTGAAGAATGTTTGCTAGTATGACCGTCTT
TATGTTTGCGATGACTGCGATGAGAATGTTCTTTTGTAGATTCCGTAGAT
TCAGCAGCTTCAAGTTTCCTTTCGGCTGACTTTGACCTTAAACGGGAACC
TTCTTTCTTTAGCTCTTCCACTCTACGAGGACTCTTTGGTgacgccattt
tgatttttgaggaagaTGGGATCGAAGCTACACCAGCAATAGCCTCGTCT
TTATTGTTGCGTCTAGTGctactttttgtttctttaattttaCTACGTGT
ACTTCCAACTTTAGAATGGACTTGAAGCACTCCTTCGTCAAGCACGGGGG
CTGCTGAGTTTACCGCGTGACTTGATGCTCGTGAAAGCGAGACAGCGCTA
TTTCGCATGGTCTCTTCAGCCGCCTCCATTGCACGCTTCGAACGGCGGAT
TTCCAGATCCTCGCGTTGTTTTTGTAAGTCACTTCTCACACTTTTCAAGC
GATTCAACGTGTCTTTAGAACCTTTACCAGTCATTGACGATTGTTGCTCA
GGTTCTTCTGGGTTGGTGAATATTTCAGGATACTGTTGACGAAGCTCGTG
ttgtttcttttgaattttctgCTGATCTGTTTTGGATGATTTATTACGAG
TTGGAGATTTAGAACGGTGTTTCTTCGATTCTTCGCGCTCCAATGCTCTT
TCAGACAAACCTTGCGTTTCTTCTGCTACTTCTAGTTGATTTTGGATGTC
TGTGAACGAGGTTTGAGTTGCTATTTCCAGTTCGTGATGACTCGTTTGTG
TTGAGTTTGTATGCTCTTTGACTCGAGTCTGTGTAGATGCACGATGCTGC
TTCATCTTTGTTTGTGTGCTTGAAGAGTTATACTCAGAATTGTCTGTCTG
TGTAGCAGATTCAGCGTCTTCTGAATGTTGTGTTTGTGTTCCAGTATTGG
CCTCTTCTGATATTGGAGTTTGAGTGGAAGCTTTATGTCCTTTGAAATTA
ACATTGAACTTGGTCTGTGTTTTAGTCGAATGTTGTTTCAATTGATGTGT
TTGTGTAGCGCTATCAACATCTTCAGACACTGTAGTCTGTGTGGAGATGT
TCGACTCTTCAGTCACGGTCTGCGTAGATGTATCACATCCTGGGGATGTT
GTGCTTTCACCCGTTAATGGGTATTGTCGAAGAGAGCTAGAACAAATGCG
GGAAATagtcggggaaacattggaggATCGGTTTCTAGAGCTTGCAGTTT
GATTAGAATTCAGAGTTGAGACTTCTAACTCTGAATCGGGTTTTACTTGT
CTCATAGATGTATCGGGGATGGGTAGACTACCATCTGGCATGGATTCCAA
GCCAGGGCTTCCGGTAGATACTGCCACTGTCACAATAGTGCTCGGAGAAT
CTGCTCCCATAGCTTGCGGTAGATACACATTGACGTGTGGAGCTTGGATT
CTTTGAGCTTCAGTGATAAGTTGTTGGTTGGTCATTTTGTTGGCTAGGTG
TCTTTTCTGTAGTTCAGCAACACGTTTTTGATGTTCCAATAAGCGTTGGT
TGTATTCAAGATTCTGTTGAGTCAACGGATTGGTTTGTTGTGAAGTTTGT
TGATTGTTGGCAAGATTTTGTTGAGAAGGCACAGTGATTCGAGGGAGTTG
TTCCATATCTTCTGAGATTGTCGTTTTTTCGGGTA Run BLAST on NCBI transcript from alignment at sc0000121:93370..98112- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011121 ID=TCONS_00011121|Name=TCONS_00011121|organism=Clytia hemisphaerica|type=transcript|length=4743bp|location=Sequence derived from alignment at sc0000121:93370..98112- (Clytia hemisphaerica)
CGCTGATACAGTGAAGTCAATAGAGCTGTCATCTTTATCACTCCCTTTCG
ACAATTCTTTCTTGCTTTGGTACGGATCCAACGCTCTTCGTGACTCTTTT
CGTGATCGTGAGCCGCCAGTATGTGATCGGGAACTACCGGTGTGCGATCG
GGAGGTATGTGATCGGGAACTACCAGTGTGCGATCGGGAACTACCAGTGT
GCGATCGGGAACTACCGGTGTGCGATCGGGAACTACCGGTGTGCGATCGG
GAACTACCTGTGTGNGTGCGATCGGGAGCTATCGGTATGCGATCGGGAAC
TACCAGTGTGCGATCGGGAACTACCGTTGTGCGATCTGGAACTACCTGTG
TTCGAACGGGAGTTGCCAGTATGCGATCGGGAGTTTAAGGCATGTGATTG
TGAGCCACCAGTGTGCGACCGTGAATCGCCAGTATGAGATCGTGACGTTC
TGGTGTGTGAGCCTTTCTTTCTGGGCGATCGTTCGTTCTCTTTCGATGCC
GACTCGACAGCTTCGATCATGAAGATTGGCATTGAATCTACACCGTTGTC
AGATGGTTCACCTATTCGATGCGAGAAATTTTGATGTAGAGAATCAAAGG
AATGATGTGAATGGCCAGCAACGTCTTTTCTTTGAATTTCTTTCATTCTA
GAAGAGCCTTTTGGTGACAACTCATTATCTTTTGCAACAGTTTTATTATC
TTTGACCTTTTGAAGAATCAATGCACTCTTTTTCTTTAAACCATGAGTGC
TGTTCCCACTCTTTACATTTGAACGTGATTTCCCTATGACAATACTATTA
GGTGATAACAACATAGCACTCTGTTGTCCAGGCTTAACAGTATGATTACT
AGGGCTCAAAGTAGCCGTGGAGTGAGTGCCGTGTTTATTAGGGTTCAAAG
TAGCCGTGGAGTGAGTGCCGTGTTTACTAGGGTTCAAAGTAGCCGTGGAG
TGAGTATTTTTACTCTTATGGTCGTCCATCTTATGTTGACTTTTAGGAGA
ATGTTTCGATTTAGAATGCCTACTCAAAGAATCGTGAGAGGTGTGTGATC
TATCATATTCTCTGATTCTGTGTGAATTTTTTGGACTGATCTCGTGACGA
TGTTTAGAATCTGCGGTGAGCACAACTGCCACATTACTCATGTCCGTGCA
CTGCACAATATCAGGTGAGCCATGTTCCACGATCAAACTTGAGGTATTGG
CTTCTGTCGTGCTAAATGCTGGCAATGCAGCAATGCTTTGGGATGCTTTT
TTTCCATCTGAACCTTGATGTAAACTTTTATGAGAACTGTCTTTTGAGAT
TTGATGAATTTCAGATTCCTCATCAGTGACTTTTGACCGTGACTTTGTGC
CATGCCTTTTAAGTTCGTGAACTCTTCGTAGACTTTCCGGAGACGTTTTC
TTCGACTTGGATAATCCAGGAGTACTAGGTTCCGCACTCAAAGCGAGTGA
ACTTTCGGTTACAATACCTTCGACTATTGGTACATTTTTATGCGATTTCT
TTGTTTTCGAAGATGCAGAGATTTCAGCATTCGAAACCAAGGAGATAGCG
CTGTCAATATCATGCCTCCGTGAGCTTTTGGGTGAAGATTTCTTTTTCAT
TGAAGGTTCGCTAACTTCAGCATTCGAAGCCAGGGACATAGTGCTTTCAA
CATCATGCCTTCGTGAGCTTTTGGGTGAAGATTTCTTTTTCATTGAAGGT
TCGCTAACTTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCATG
CCTTCGTGAGCTTTTGGGTGAAGATTTCTTTTTCATTGAAGGTTCGCTAA
CTTCAGCATTCGAAGCCAAGGACATAGTGCTTTCAACATCATGCCTTCGT
GAGCTTTTGGGTGAAGATTTCTTTGTCTTGGAAGGTCCAGGGATTTCAGC
ATTCGAAGCCAGGGACAAGGAGCTGTCGATATCATGCCTCCGTGAGCTTT
TGGGTGAAGATTTCTTTTTCGTTGAAGGTTCGTTAACTTCAGCACTCGAA
GTCAGGGACATAGCATTATCAATATCATGCCTCCGTGGACTTCTAGGTGA
AGATTTCTTTTTTATTGAAGGTTCGCTAACTTCAGCATTCGAAGCCAAGG
ACATAGTGCTTTCAACATCATGCCTTCGTGAGCTTTTGGGTGAAGATTTC
TTTGTCTTGGAAGATCCAGGGATTTCAGCATTCGAAGCCAAAGACATAGC
GCTGTCAATATCATGTTTCCGTGAACTTTTGGGTGAAGATTTCTTTGTCT
TGGAAGATCCAGGGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCA
ATATCATGTTTCCGTGAACTTTTGGGTGAAGATTTCTTTGTCTTGGAAGA
TCCAGGGATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAATATCAT
GTTTCCGTGAACTTTTGGGTGAAGATTTCTTTGTCTTGGAAGATCCAGGG
ATTTCAGCATTCGAAGCCAAAGACATAGCGCTGTCAATATCATGTTTCCG
TGAACTTTTGGGTGAAGATTTCTTTTTCATTGAAGGTTCGCTAACTTCAG
GATTCGAAGCCAGGGACATTGCATTATCAATATCATACCTCCGTGAACTT
TTAGGTGAAGATTTCTTTTTTACTGAAGATCCAGAGATTTCAGCATTCGA
AGCCAAAGACATAGCGCTGTCAACATCATGCCTCCGTGAACTTCTAGGTG
AAGATTTCTTTTTCCTTGAAGACTCAGAAACTTCAGCATCATTTCGTTTA
GACGTCGATTTTTTTCGCTTGAATTCTTCAGGGACATCAAAAGAAATAGA
AATGCAACTTTCGTCTGATAAGTTTTCTTCTTCGCGTAGCGTTGTAGGAA
GCTGTAGATCTTTGTTTCCAGTAAGCTTTACAATATCACTCTCCGTAAAG
CCGATAGAACTTTTTTGTCCCGTTCTTCTAGTAGAGCTACGAGTAGTACC
TTTCCCGAATTCGCTTAGTTGATGTTCATTAGTGCTTTTTTTACGTTTAT
GATCTTTACGAGAGTCTTTCTTTTTCCCAGTAGCACTACCTTCAGATAAC
AATTGAGCTGAGCTTTGTCCAGATATTTCTGAAGAATGTTTGCTAGTATG
ACCGTCTTTATGTTTGCGATGACTGCGATGAGAATGTTCTTTTGTAGATT
CCGTAGATTCAGCAGCTTCAAGTTTCCTTTCGGCTGACTTTGACCTTAAA
CGGGAACCTTCTTTCTTTAGCTCTTCCACTCTACGAGGACTCTTTGGTGA
CGCCATTTTGATTTTTGAGGAAGATGGGATCGAAGCTACACCAGCAATAG
CCTCGTCTTTATTGTTGCGTCTAGTGCTACTTTTTGTTTCTTTAATTTTA
CTACGTGTACTTCCAACTTTAGAATGGACTTGAAGCACTCCTTCGTCAAG
CACGGGGGCTGCTGAGTTTACCGCGTGACTTGATGCTCGTGAAAGCGAGA
CAGCGCTATTTCGCATGGTCTCTTCAGCCGCCTCCATTGCACGCTTCGAA
CGGCGGATTTCCAGATCCTCGCGTTGTTTTTGTAAGTCACTTCTCACACT
TTTCAAGCGATTCAACGTGTCTTTAGAACCTTTACCAGTCATTGACGATT
GTTGCTCAGGTTCTTCTGGGTTGGTGAATATTTCAGGATACTGTTGACGA
AGCTCGTGTTGTTTCTTTTGAATTTTCTGCTGATCTGTTTTGGATGATTT
ATTACGAGTTGGAGATTTAGAACGGTGTTTCTTCGATTCTTCGCGCTCCA
ATGCTCTTTCAGACAAACCTTGCGTTTCTTCTGCTACTTCTAGTTGATTT
TGGATGTCTGTGAACGAGGTTTGAGTTGCTATTTCCAGTTCGTGATGACT
CGTTTGTGTTGAGTTTGTATGCTCTTTGACTCGAGTCTGTGTAGATGCAC
GATGCTGCTTCATCTTTGTTTGTGTGCTTGAAGAGTTATACTCAGAATTG
TCTGTCTGTGTAGCAGATTCAGCGTCTTCTGAATGTTGTGTTTGTGTTCC
AGTATTGGCCTCTTCTGATATTGGAGTTTGAGTGGAAGCTTTATGTCCTT
TGAAATTAACATTGAACTTGGTCTGTGTTTTAGTCGAATGTTGTTTCAAT
TGATGTGTTTGTGTAGCGCTATCAACATCTTCAGACACTGTAGTCTGTGT
GGAGATGTTCGACTCTTCAGTCACGGTCTGCGTAGATGTATCACATCCTG
GGGATGTTGTGCTTTCACCCGTTAATGGGTATTGTCGAAGAGAGCTAGAA
CAAATGCGGGAAATAGTCGGGGAAACATTGGAGGATCGGTTTCTAGAGCT
TGCAGTTTGATTAGAATTCAGAGTTGAGACTTCTAACTCTGAATCGGGTT
TTACTTGTCTCATAGATGTATCGGGGATGGGTAGACTACCATCTGGCATG
GATTCCAAGCCAGGGCTTCCGGTAGATACTGCCACTGTCACAATAGTGCT
CGGAGAATCTGCTCCCATAGCTTGCGGTAGATACACATTGACGTGTGGAG
CTTGGATTCTTTGAGCTTCAGTGATAAGTTGTTGGTTGGTCATTTTGTTG
GCTAGGTGTCTTTTCTGTAGTTCAGCAACACGTTTTTGATGTTCCAATAA
GCGTTGGTTGTATTCAAGATTCTGTTGAGTCAACGGATTGGTTTGTTGTG
AAGTTTGTTGATTGTTGGCAAGATTTTGTTGAGAAGGCACAGTGATTCGA
GGGAGTTGTTCCATATCTTCTGAGATTGTCGTTTTTTCGGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011121-exon-sc0000121-1575043694:97959..98112 | TCONS_00011121-exon-sc0000121-1575043694:97959..98112 | Clytia hemisphaerica | exon |
| TCONS_00011121-exon-sc0000121-1575043694:93370..97750 | TCONS_00011121-exon-sc0000121-1575043694:93370..97750 | Clytia hemisphaerica | exon |
| TCONS_00011121-exon-sc0000121-1510915933:97959..98112 | TCONS_00011121-exon-sc0000121-1510915933:97959..98112 | Clytia hemisphaerica | exon |
| TCONS_00011121-exon-sc0000121-1510915933:93370..97750 | TCONS_00011121-exon-sc0000121-1510915933:93370..97750 | Clytia hemisphaerica | exon |
| TCONS_00011121-exon-sc0000121-1491911889:97959..98112 | TCONS_00011121-exon-sc0000121-1491911889:97959..98112 | Clytia hemisphaerica | exon |
| TCONS_00011121-exon-sc0000121-1491911889:93370..97750 | TCONS_00011121-exon-sc0000121-1491911889:93370..97750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:93370..98112 - |
Blast
The following BLAST results are available for this feature:
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