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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011108 ID=TCONS_00011108|Name=TCONS_00011108|organism=Clytia hemisphaerica|type=transcript|length=2846bpRun BLAST on NCBI protein sequence of TCONS_00011108-protein >TCONS_00011108-protein ID=TCONS_00011108-protein|Name=TCONS_00011108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp MAEGIEIDDLTWRTEIALCMKQPDLPKLRDLCRGRKIPDDCRPQIWKIALRun BLAST on NCBI transcript from alignment at sc0000121:442580..497028+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011108 ID=TCONS_00011108|Name=TCONS_00011108|organism=Clytia hemisphaerica|type=transcript|length=54449bp|location=Sequence derived from alignment at sc0000121:442580..497028+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000121:442580..497028+ >TCONS_00011108 ID=TCONS_00011108|Name=TCONS_00011108|organism=Clytia hemisphaerica|type=CDS|length=34074bp|location=Sequence derived from alignment at sc0000121:442580..497028+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011108 vs. Swiss-Prot (Human)
Match: TBC23 (TBC1 domain family member 23 OS=Homo sapiens GN=TBC1D23 PE=1 SV=3) HSP 1 Score: 529.635 bits (1363), Expect = 4.726e-175 Identity = 283/655 (43.21%), Postives = 409/655 (62.44%), Query Frame = 3
Query: 48 MAEGIEIDDLT------WRTEI--ALCMKQPDLPKLRDLCRGRKIPDDCRPQIWKIALNVIGKPDALVTWDGLLDMGEQDVLKEDCILQAAKMKLAXXXXXXVSRDMEGLITFFCKSRGEKYRSSSGLVELLSPFITLNLPLCEVYNCFYAMQARFIPRECYRDGKPFHLFRQLLQYHDPQLCSFLDSRKISPDSYAQKWLRSLFVCICDSEVIHAMWDYYYLESDPYFVFFLMLVMVLNAKDQILENSTKSKASIIEMITNFPAQLGAEDIEDFCALAHYYAVRTPTSYRKDFQPFLFGTKITVND---YISNSLCLQISLVELLEAVEGRSNTDVKFCLVDCRPAEHYNNGHLPTAFHLDANLMLQEPEEFQTAVAALFATQQQSIEAGSNAGGEHLCFVGSGRESEDQYVNMVVANFLQRGTHFVSIAKGGYSAVHELLADDLTGNLVDHDSKKCIVCSPE-AFSSEDESHEMSQGESSSDTPMSPKMSATRS--GLVDKISSSILNRGVDVRERLGRLITES--------------NKAQVERHVSENDKTGKRYRGVNLDIFSIEDPDD-------AVASSSDEHQEAVNIDTWVKRSDVIRHFPCSEITGSGQMYSSYILLTPSQLFILREIVDKERPGWANXYSAHAI 1907
MAEG ++ L W ++ AL DL LR++ +GR +P D R ++WKIALNV GK D+L +WDG+LD+ EQ+ + +DC+ ++ + EE E+ D+E +ITF+CKSR KY +S + LL P + L LP ++YNCFYA+ ++IPR+C + G+PFHLFR L+QYH+P+LCS+LD++KI+PDSYA WL SLF C C +EV A+WD Y ++DP+F++FLML++++NAK+ IL + SK +I+ + N P+ L EDIED +LA YY +TP S+RKD T + + D +S +LCL IS+ E+L+A + + V+F +VDCRPAE YN GHL TAFHLD++LMLQ P EF +V +L Q+QSIE+GS AGGEHLCF+GSGRE ED Y+NMV+A+FLQ+ +VSIA GG+ A+ + LAD V PE + S S+ +S SP S+ R LV+K++ ++ + V+VRE++ I + +++ ERHVS +D+ GK YRGV +FSI D ++ + + S D+ +E VNI TW+ + DV HFPC E+ SG M+ S++L+T + ++ LREIV R G A S A+
Sbjct: 1 MAEGEDVPPLPTSSGDGWEKDLEEALEAGGCDLETLRNIIQGRPLPADLRAKVWKIALNVAGKGDSLASWDGILDLPEQNTIHKDCLQFIDQLSVPEEKAAELLLDIESVITFYCKSRNIKYSTSLSWIHLLKPLVHLQLPRSDLYNCFYAIMNKYIPRDCSQKGRPFHLFRLLIQYHEPELCSYLDTKKITPDSYALNWLGSLFACYCSTEVTQAIWDGYLQQADPFFIYFLMLIILVNAKEVILTQESDSKEEVIKFLENTPSSLNIEDIEDLFSLAQYYCSKTPASFRKDNHHLFGSTLLGIKDDDADLSQALCLAISVSEILQANQLQGE-GVRFFVVDCRPAEQYNAGHLSTAFHLDSDLMLQNPSEFAQSVKSLLEAQKQSIESGSIAGGEHLCFMGSGREEEDMYMNMVLAHFLQKNKEYVSIASGGFMALQQHLAD-------------INVDGPENGYGHWIASTSGSRSSINSVDGESPNGSSDRGMKSLVNKMTVALKTKSVNVREKVISFIENTSTPVDRMSFNLPWPDRSCTERHVSSSDRVGKPYRGVK-PVFSIGDEEEYDTDEIDSSSMSDDDRKEVVNIQTWINKPDVKHHFPCKEVKESGHMFPSHLLVTATHMYCLREIVS--RKGLAYIQSRQAL 638 HSP 2 Score: 94.7449 bits (234), Expect = 8.828e-20 Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 1882 PTXILLTPSQLFILREIVDKERPGWANIQSRPHLTSIVKITSKRKHPDLITFKYGTSDGEDFNITGSQRFLIPNSKQVMKKIKERIMKVIE 2154
P+ +L+T + ++ LREIV R G A IQSR L S+VKITSK+KHP+LITFKYG S I +R+LIPN+ K IK++IMKV++
Sbjct: 607 PSHLLVTATHMYCLREIV--SRKGLAYIQSRQALNSVVKITSKKKHPELITFKYGNSSASGIEILAIERYLIPNAGDATKAIKQQIMKVLD 695 The following BLAST results are available for this feature:
BLAST of TCONS_00011108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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