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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011106 ID=TCONS_00011106|Name=TCONS_00011106|organism=Clytia hemisphaerica|type=transcript|length=2553bp
cggAAATTCTATTACAGCTGTAATGAATAGCCAATCAAAACGCTAGAATC
TTACGTTGTTGTTTTATTCGTGTAAAAAATTTTCCCTCGTGttattttct
gtaaaaaaatttttttttgttcgtacATGCAGTTCAAAAAAACTTGCTAA
CGTGAGTGGAAAGTTTGACCATCCTTCagagaaaaatattaatttgaagC
TTGTTTTTTATCAGAAAACAAAGTAAAAACTTGAATCTGTTGGCATTTAT
TGTGATTTGTTTTGTACTGAAAAAATGTTGGCATCAGTGGAATCAAGACT
TCGAGAGGAAGAGCAGTTTTTAATTCAACCTCCAGTCAAAAAGATACGTT
CAGACTCTGGCTCGAGTGATCCTCACAGTTTGGAAGCTCCTGTTACTGTA
CGAAATTTAGAATTGGAAGGAGTTAAAGAATTGTTTCAAGATTATGATTT
ATTGGAAGCTGAAGCTGTATCGTGTGTTATCTGTggcaaaaactaCAAGA
GCAAAGTTTGTGTCAAGAAACACCTTTGGGAACACAGTGTTTACTGGGAC
TTATTCGACGGCCTGAAGAAACAACAACGTGTTTTATCCATCCAAGCTGC
AATTATTTTAGCTATCAAGTTTAATCCTTCACTCTCACTTCTACTTGTCA
CTAATTCGTCCAGTGGAAACAAGAAGAACAAAGAGAAACGTGAAGAATCG
AAACATTTGACCATTCAACCCAGACAGCCTTATCCACCACAACAAACGAC
CACAGATAGATTACACCCGACATCGCCTGTCGACATATTACCGTCACCCC
CGGTCGCCATCACGACGACGCCGATTAATAACATCAATCGTAAACGAAAA
GTAGACGAGATTTCAACATCACTAGCCCCACCATCTCACGCCTTTCAATT
CTCAAGTGCAGTATCAACACAAACAAGAGAATTTTCAGTTCAAACTGTAC
CACAACCTCAACCTACGACCAATAGTCTCAGCACTTCGTCCATAGTCATT
AGATAATTCGTCATATGGTATAATAtagatttatttttcatatttctttt
cattatatttttttgacTTATTTTTTTGATAGGCGCGAGAAATATGCGTA
AAAAAGATAAGGACTCTGACCTGCGTTTTGTTTTAGTAAAAAAGTATGTT
CAAAAACgaaaatatcttttgaaagaaGTATTGCATAGAAGACGCACTTT
CAAATCTCTTGCTGGTTTtcactgaaaacaaaagaacggGTTGCAAAGCA
TGCTGAAGGCAATGTTAACAGTCGAACAGAGCGTGTTTGGTAACTACGCT
CGTTATTAAAAGCAAATTTGAACGAAATTTAAAGCGCGCGTTTTTTTATC
GGTTTAgtttaaacccccccccctgcccTATATTATAAAGCGTGGTTATC
TtcttaattcaaaaagaaaaactgaaaactttttattgaaaatgatAGAG
AACTTCTTTCTGGAGAAAATAAAGCCTAAAGATAAACAATTGTATTAACA
AAGCTTCTCTTTTCTTCTCTTAACTAAGATTTTTCTCAGAATAATAAAGC
TCTTTTCAAATTAAACTGCTAGCTATCCACTATGAGACTTCTGTAAATAT
TAGACTTCTGATAAGATTTTTATATCCCCTTAAGATATGTAGTATGTAGG
AATGCTATGaccaaaaaaataatcaaatttctCATTCATTTATGAAGACG
TGTATTGTAGTagtttttttctcgaaaaaaatgtaataatTTTCACTTTA
ATGTTATAGATAGAATTATAGgctttaattttttgaatttcttatttttg
agtGAAGGTTAACGGCTAGAAGGGGGCATTTTGGAAGAGCTTTGCATTTT
AGTAGAGTTTTTGTAGAAATGGTCCTTCAGCTCGAAGAGTGTGGTGTGAG
ACATCTATCCTATTAcatgcaaaaaaattaattaaagttGGCTTTCCTGC
TGTCCACACCGCTTTCTTCTTTATTAGATAATTATTGTCTTGCTCCTAAA
GTAATTTATATTTACACAAATAATCCCAAAGCAATTATTACAAGTTTTTT
AATATTCCTTTTTTCCATGATGATTATTTCAAGTAGATCGTAGTAAATTG
TAAAACCATTTATTTTAGAATTTCGTAATCTATTGTGAAACCTTTTctga
actttttttctcagaatTCATGATATAGAGTATTTATCCTACAGGATTAA
AATTCTCTTGTTACTCAAACTGTCGCTAACTAAACCAGCTAGTAATAGTG
TCGTGTTATTTTCTAGTGTTTTTTTCATATTGGGTCCCATTTTTCGTGTT
ACTTTGATATAAAAAGTATAAAGTGTTATCTTTTCccttattttttaaaa
tttactaTTATTGATAAATCATTATTAATTGATAGCTCCCGAAAACTACA
TTATGTATATATGTAAGAACCCTTGTAaatttttacataaaatttgTTGT
TTCTTCCTAAAAGAGAGAATAGAATTACAAAAGTAAAAATATCTAAACAT
TGGCTCATTTAATTCATTGTTATTCTCCTTCTTTTGCACTTTTCGAACCT
GAC Run BLAST on NCBI protein sequence of TCONS_00011106-protein >TCONS_00011106-protein ID=TCONS_00011106-protein|Name=TCONS_00011106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MLASVESRLREEEQFLIQPPVKKIRSDSGSSDPHSLEAPVTVRNLELEGV
KELFQDYDLLEAEAVSCVICGKNYKSKVCVKKHLWEHSVYWDLFDGLKKQ
QRVLSIQAAIILAIKFNPSLSLLLVTNSSSGNKKNKEKREESKHLTIQPR
QPYPPQQTTTDRLHPTSPVDILPSPPVAITTTPINNINRKRKVDEISTSL
APPSHAFQFSSAVSTQTREFSVQTVPQPQPTTNSLSTSSIVIR Run BLAST on NCBI transcript from alignment at sc0000121:410442..414459+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011106 ID=TCONS_00011106|Name=TCONS_00011106|organism=Clytia hemisphaerica|type=transcript|length=4018bp|location=Sequence derived from alignment at sc0000121:410442..414459+ (Clytia hemisphaerica)
cggAAATTCTATTACAGCTGTAATGAATAGCCAATCAAAACGCTAGAATC
TTACGTTGTTGTTTTATTCGTGTAAAAAATTTTCCCTCGTGttattttct
gtaaaaaaatttttttttgttcgtacATGCAGTTCAAAAAAACTTGCTAA
CGTGAGTGGAAAGTTTGACCATCCTTCagagaaaaatattaatttgaagC
TTGTTTTTTATCAGAAAACAAAGTAAAAACTTGAATCTGTTGGCATTTAT
TGTGATTTGTTTTGTACTGAAAAAATGTTGGCATCAGTGGAATCAAGACT
TCGAGAGGAAGAGCAGTTTTTAATTCAACCTCCAGTCAAAAAGATACGTT
CAGACTCTGGCTCGAGTGATCCTCACAGTTTGGAAGCTCCTGTTACTGTA
CGAAATTTAGAATTGGAAGGAGTTAAAGAATTGTTTCAAGATTATGATTT
ATTGGAAGCTGAAGCTGTATCGTGTGTTATCTGTggtaagttttttcttt
cactctTTCTTGTTAAAGTTTCAGACCTCGTGGTTCACATGGCTTATGCA
ATTAAATTTTACTCTTATTAAAACTTTAAGTTAGCTTTTCTTTTCTGTTC
TTTTGCATGTCTGAATGTTTGGCAAGAACTTTTCTGCAGTTGTTTTCGTT
TTGGAGTTTATAAATACCAAAATCCGAGTACAGGGAATGTCGCCTAATTT
CTCTCTGCGTTTTCTACCATGATTTTTATTCTATGGGTTGTTAGGAAAGT
TTAGATTTCCTTCATTATTCTCACCGAATTAAATTTTCCAGGCAAGTTTT
GCAAACTTTTCCCGCTTTTTTCTTTCGTTCATTTACTATTCAACACAGCG
GCATACCAGACgtgattttttaataatttcataACATGGGGCTCCTGTTG
TTGCACAGTTTATTTTCTCAAAACACTTCTGAAATTATAACAAATGTTTT
TCTTGGCAAATATTGCAAGTCCTGAAACTTTATGagagaaaaataacttt
tcttCTAATCTTAAGGCGAGATTAGATTTTGGATATTGTCTTTTCCTCTC
TACTTTTTGgctcgaaaaaaaaatatagaagAAAACGTTTTCCGTAAACA
TAGAATTGTtcatttgttcttatttttctctctattttattaaacttttg
atttttttcacatgaacacatttccaaatatttgagagctattatttagt
aaaaaaatacatttagaGAGAAATTCTCTCGAAGAACCAACTTcgaaatt
tttctcaaagtttCATTTTGTATTCATGTTTAcgaaaaattcaacaaatt
ttttctAACATTTCTCCCAAATAAATGTTGCCATTGTagcaaatttttca
ctttttagtcAGTTTTTCCTCCCGAAGGAATAACATGTTTCCAAACAATT
TTAGTCTCTGGCTCATCAAGCGTGCGACCGATTTTTACAAacagttattt
tttctttgaatttgtaTAATATACATCTTTTTTCATCCATTATTTTTCAT
TGATTGATGGatcgaaaatttaaattttgcttGTAATATGAGCCTATTTT
CGTTGCCCTTTTTAAAACTGCAAAAAAAACTTACAGAATTGGCATATTGT
ATTTGTTTACAAATTAAACAGAAAAATTCCTGTTTGTAGCCTGTCCTTTC
AGCATTTCAGTGTAGCAAAAAATTTTGGCCTCgcctagaaaaaaaatttt
ccaccgttaATTCAAAAACTAATGATCAAGTGGTCATTAATTTATCTAGT
TTTTTTGGCATGCAAAATCTTGACAATAGCTCAATCATAATTAAGTCGAG
TTAAATCACCGGATTTCCCTTCTGTATCTATTCATATAATTTTAATAGCT
TCGATCTTTTTCTCCTTTGACGTGTCTAGCCTGAGGATCGGTCATTGTGA
TAAAATAAACACTCGCTAAATGACTCTTCccctttttttacctttttcag
gcaaaaactaCAAGAGCAAAGTTTGTGTCAAGAAACACCTTTGGGAACAC
AGTGTTTACTGGGACTTATTCGACGGCCTGAAGAAACAACAACGTGTTTT
ATCCATCCAAGCTGCAATTATTTTAGCTATCAAGTTTAATCCTTCACTCT
CACTTCTACTTGTCACTAATTCGTCCAGTGGAAACAAGAAGAACAAAGAG
AAACGTGAAGAATCGAAACATTTGACCATTCAACCCAGACAGCCTTATCC
ACCACAACAAACGACCACAGATAGATTACACCCGACATCGCCTGTCGACA
TATTACCGTCACCCCCGGTCGCCATCACGACGACGCCGATTAATAACATC
AATCGTAAACGAAAAGTAGACGAGATTTCAACATCACTAGCCCCACCATC
TCACGCCTTTCAATTCTCAAGTGCAGTATCAACACAAACAAGAGAATTTT
CAGTTCAAACTGTACCACAACCTCAACCTACGACCAATAGTCTCAGCACT
TCGTCCATAGTCATTAGATAATTCGTCATATGGTATAATAtagatttatt
tttcatatttcttttcattatatttttttgacTTATTTTTTTGATAGGCG
CGAGAAATATGCGTAAAAAAGATAAGGACTCTGACCTGCGTTTTGTTTTA
GTAAAAAAGTATGTTCAAAAACgaaaatatcttttgaaagaaGTATTGCA
TAGAAGACGCACTTTCAAATCTCTTGCTGGTTTtcactgaaaacaaaaga
acggGTTGCAAAGCATGCTGAAGGCAATGTTAACAGTCGAACAGAGCGTG
TTTGGTAACTACGCTCGTTATTAAAAGCAAATTTGAACGAAATTTAAAGC
GCGCGTTTTTTTATCGGTTTAgtttaaacccccccccctgcccTATATTA
TAAAGCGTGGTTATCTtcttaattcaaaaagaaaaactgaaaacttttta
ttgaaaatgatAGAGAACTTCTTTCTGGAGAAAATAAAGCCTAAAGATAA
ACAATTGTATTAACAAAGCTTCTCTTTTCTTCTCTTAACTAAGATTTTTC
TCAGAATAATAAAGCTCTTTTCAAATTAAACTGCTAGCTATCCACTATGA
GACTTCTGTAAATATTAGACTTCTGATAAGATTTTTATATCCCCTTAAGA
TATGTAGTATGTAGGAATGCTATGaccaaaaaaataatcaaatttctCAT
TCATTTATGAAGACGTGTATTGTAGTagtttttttctcgaaaaaaatgta
ataatTTTCACTTTAATGTTATAGATAGAATTATAGgctttaattttttg
aatttcttatttttgagtGAAGGTTAACGGCTAGAAGGGGGCATTTTGGA
AGAGCTTTGCATTTTAGTAGAGTTTTTGTAGAAATGGTCCTTCAGCTCGA
AGAGTGTGGTGTGAGACATCTATCCTATTAcatgcaaaaaaattaattaa
agttGGCTTTCCTGCTGTCCACACCGCTTTCTTCTTTATTAGATAATTAT
TGTCTTGCTCCTAAAGTAATTTATATTTACACAAATAATCCCAAAGCAAT
TATTACAAGTTTTTTAATATTCCTTTTTTCCATGATGATTATTTCAAGTA
GATCGTAGTAAATTGTAAAACCATTTATTTTAGAATTTCGTAATCTATTG
TGAAACCTTTTctgaactttttttctcagaatTCATGATATAGAGTATTT
ATCCTACAGGATTAAAATTCTCTTGTTACTCAAACTGTCGCTAACTAAAC
CAGCTAGTAATAGTGTCGTGTTATTTTCTAGTGTTTTTTTCATATTGGGT
CCCATTTTTCGTGTTACTTTGATATAAAAAGTATAAAGTGTTATCTTTTC
ccttattttttaaaatttactaTTATTGATAAATCATTATTAATTGATAG
CTCCCGAAAACTACATTATGTATATATGTAAGAACCCTTGTAaattttta
cataaaatttgTTGTTTCTTCCTAAAAGAGAGAATAGAATTACAAAAGTA
AAAATATCTAAACATTGGCTCATTTAATTCATTGTTATTCTCCTTCTTTT
GCACTTTTCGAACCTGAC Coding sequence (CDS) from alignment at sc0000121:410442..414459+ >TCONS_00011106 ID=TCONS_00011106|Name=TCONS_00011106|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at sc0000121:410442..414459+ (Clytia hemisphaerica)
ATGTTGGCATCAGTGGAATCAAGACTTCGAGAGGAAGAGCAGTTTTTAAT
TCAACCTCCAGTCAAAAAGATACGTTCAGACTCTGGCTCGAGTGATCCTC
ACAGTTTGGAAGCTCCTGTTACTGTACGAAATTTAGAATTGGAAGGAGTT
AAAGAATTGTTTCAAGATTATGATTTATTGGAAGCTGAAGCTGTATCGTG
TGTTATCTGTggcaaaaactaCAAGAGCAAAGTTTGTGTCAAGAAACACC
TTTGGGAACACAGTGTTTACTGGGACTTATTCGACGGCCTGAAGAAACAA
CAACGTGTTTTATCCATCCAAGCTGCAATTATTTTAGCTATCAAGTTTAA
TCCTTCACTCTCACTTCTACTTGTCACTAATTCGTCCAGTGGAAACAAGA
AGAACAAAGAGAAACGTGAAGAATCGAAACATTTGACCATTCAACCCAGA
CAGCCTTATCCACCACAACAAACGACCACAGATAGATTACACCCGACATC
GCCTGTCGACATATTACCGTCACCCCCGGTCGCCATCACGACGACGCCGA
TTAATAACATCAATCGTAAACGAAAAGTAGACGAGATTTCAACATCACTA
GCCCCACCATCTCACGCCTTTCAATTCTCAAGTGCAGTATCAACACAAAC
AAGAGAATTTTCAGTTCAAACTGTACCACAACCTCAACCTACGACCAATA
GTCTCAGCACTTCGTCCATAGTCATTAGATAAATGTTGGCATCAGTGGAA
TCAAGACTTCGAGAGGAAGAGCAGTTTTTAATTCAACCTCCAGTCAAAAA
GATACGTTCAGACTCTGGCTCGAGTGATCCTCACAGTTTGGAAGCTCCTG
TTACTGTACGAAATTTAGAATTGGAAGGAGTTAAAGAATTGTTTCAAGAT
TATGATTTATTGGAAGCTGAAGCTGTATCGTGTGTTATCTGTggcaaaaa
ctaCAAGAGCAAAGTTTGTGTCAAGAAACACCTTTGGGAACACAGTGTTT
ACTGGGACTTATTCGACGGCCTGAAGAAACAACAACGTGTTTTATCCATC
CAAGCTGCAATTATTTTAGCTATCAAGTTTAATCCTTCACTCTCACTTCT
ACTTGTCACTAATTCGTCCAGTGGAAACAAGAAGAACAAAGAGAAACGTG
AAGAATCGAAACATTTGACCATTCAACCCAGACAGCCTTATCCACCACAA
CAAACGACCACAGATAGATTACACCCGACATCGCCTGTCGACATATTACC
GTCACCCCCGGTCGCCATCACGACGACGCCGATTAATAACATCAATCGTA
AACGAAAAGTAGACGAGATTTCAACATCACTAGCCCCACCATCTCACGCC
TTTCAATTCTCAAGTGCAGTATCAACACAAACAAGAGAATTTTCAGTTCA
AACTGTACCACAACCTCAACCTACGACCAATAGTCTCAGCACTTCGTCCA
TAGTCATTAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00011106-exon-sc0000121-1491911889:410442..410926 | TCONS_00011106-exon-sc0000121-1491911889:410442..410926 | Clytia hemisphaerica | exon |
| TCONS_00011106-exon-sc0000121-1510915933:410442..410926 | TCONS_00011106-exon-sc0000121-1510915933:410442..410926 | Clytia hemisphaerica | exon |
| TCONS_00011106-exon-sc0000121-1575043694:410442..410926 | TCONS_00011106-exon-sc0000121-1575043694:410442..410926 | Clytia hemisphaerica | exon |
| TCONS_00011106-exon-sc0000121-1491911889:412392..414459 | TCONS_00011106-exon-sc0000121-1491911889:412392..414459 | Clytia hemisphaerica | exon |
| TCONS_00011106-exon-sc0000121-1510915933:412392..414459 | TCONS_00011106-exon-sc0000121-1510915933:412392..414459 | Clytia hemisphaerica | exon |
| TCONS_00011106-exon-sc0000121-1575043694:412392..414459 | TCONS_00011106-exon-sc0000121-1575043694:412392..414459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:410442..414459 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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