XLOC_006218 (gene) - C. hemisphaerica

Overview
NameXLOC_006218
Unique NameXLOC_006218
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000121:410442..414459+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006218 ID=XLOC_006218|Name=XLOC_006218|organism=Clytia hemisphaerica|type=gene|length=4018bp|location=Sequence derived from alignment at sc0000121:410442..414459+ (Clytia hemisphaerica)
cggAAATTCTATTACAGCTGTAATGAATAGCCAATCAAAACGCTAGAATC
TTACGTTGTTGTTTTATTCGTGTAAAAAATTTTCCCTCGTGttattttct
gtaaaaaaatttttttttgttcgtacATGCAGTTCAAAAAAACTTGCTAA
CGTGAGTGGAAAGTTTGACCATCCTTCagagaaaaatattaatttgaagC
TTGTTTTTTATCAGAAAACAAAGTAAAAACTTGAATCTGTTGGCATTTAT
TGTGATTTGTTTTGTACTGAAAAAATGTTGGCATCAGTGGAATCAAGACT
TCGAGAGGAAGAGCAGTTTTTAATTCAACCTCCAGTCAAAAAGATACGTT
CAGACTCTGGCTCGAGTGATCCTCACAGTTTGGAAGCTCCTGTTACTGTA
CGAAATTTAGAATTGGAAGGAGTTAAAGAATTGTTTCAAGATTATGATTT
ATTGGAAGCTGAAGCTGTATCGTGTGTTATCTGTggtaagttttttcttt
cactctTTCTTGTTAAAGTTTCAGACCTCGTGGTTCACATGGCTTATGCA
ATTAAATTTTACTCTTATTAAAACTTTAAGTTAGCTTTTCTTTTCTGTTC
TTTTGCATGTCTGAATGTTTGGCAAGAACTTTTCTGCAGTTGTTTTCGTT
TTGGAGTTTATAAATACCAAAATCCGAGTACAGGGAATGTCGCCTAATTT
CTCTCTGCGTTTTCTACCATGATTTTTATTCTATGGGTTGTTAGGAAAGT
TTAGATTTCCTTCATTATTCTCACCGAATTAAATTTTCCAGGCAAGTTTT
GCAAACTTTTCCCGCTTTTTTCTTTCGTTCATTTACTATTCAACACAGCG
GCATACCAGACgtgattttttaataatttcataACATGGGGCTCCTGTTG
TTGCACAGTTTATTTTCTCAAAACACTTCTGAAATTATAACAAATGTTTT
TCTTGGCAAATATTGCAAGTCCTGAAACTTTATGagagaaaaataacttt
tcttCTAATCTTAAGGCGAGATTAGATTTTGGATATTGTCTTTTCCTCTC
TACTTTTTGgctcgaaaaaaaaatatagaagAAAACGTTTTCCGTAAACA
TAGAATTGTtcatttgttcttatttttctctctattttattaaacttttg
atttttttcacatgaacacatttccaaatatttgagagctattatttagt
aaaaaaatacatttagaGAGAAATTCTCTCGAAGAACCAACTTcgaaatt
tttctcaaagtttCATTTTGTATTCATGTTTAcgaaaaattcaacaaatt
ttttctAACATTTCTCCCAAATAAATGTTGCCATTGTagcaaatttttca
ctttttagtcAGTTTTTCCTCCCGAAGGAATAACATGTTTCCAAACAATT
TTAGTCTCTGGCTCATCAAGCGTGCGACCGATTTTTACAAacagttattt
tttctttgaatttgtaTAATATACATCTTTTTTCATCCATTATTTTTCAT
TGATTGATGGatcgaaaatttaaattttgcttGTAATATGAGCCTATTTT
CGTTGCCCTTTTTAAAACTGCAAAAAAAACTTACAGAATTGGCATATTGT
ATTTGTTTACAAATTAAACAGAAAAATTCCTGTTTGTAGCCTGTCCTTTC
AGCATTTCAGTGTAGCAAAAAATTTTGGCCTCgcctagaaaaaaaatttt
ccaccgttaATTCAAAAACTAATGATCAAGTGGTCATTAATTTATCTAGT
TTTTTTGGCATGCAAAATCTTGACAATAGCTCAATCATAATTAAGTCGAG
TTAAATCACCGGATTTCCCTTCTGTATCTATTCATATAATTTTAATAGCT
TCGATCTTTTTCTCCTTTGACGTGTCTAGCCTGAGGATCGGTCATTGTGA
TAAAATAAACACTCGCTAAATGACTCTTCccctttttttacctttttcag
gcaaaaactaCAAGAGCAAAGTTTGTGTCAAGAAACACCTTTGGGAACAC
AGTGTTTACTGGGACTTATTCGACGGCCTGAAGAAACAACAACGTGTTTT
ATCCATCCAAGCTGCAATTATTTTAGCTATCAAGTTTAATCCTTCACTCT
CACTTCTACTTGTCACTAATTCGTCCAGTGGAAACAAGAAGAACAAAGAG
AAACGTGAAGAATCGAAACATTTGACCATTCAACCCAGACAGCCTTATCC
ACCACAACAAACGACCACAGATAGATTACACCCGACATCGCCTGTCGACA
TATTACCGTCACCCCCGGTCGCCATCACGACGACGCCGATTAATAACATC
AATCGTAAACGAAAAGTAGACGAGATTTCAACATCACTAGCCCCACCATC
TCACGCCTTTCAATTCTCAAGTGCAGTATCAACACAAACAAGAGAATTTT
CAGTTCAAACTGTACCACAACCTCAACCTACGACCAATAGTCTCAGCACT
TCGTCCATAGTCATTAGATAATTCGTCATATGGTATAATAtagatttatt
tttcatatttcttttcattatatttttttgacTTATTTTTTTGATAGGCG
CGAGAAATATGCGTAAAAAAGATAAGGACTCTGACCTGCGTTTTGTTTTA
GTAAAAAAGTATGTTCAAAAACgaaaatatcttttgaaagaaGTATTGCA
TAGAAGACGCACTTTCAAATCTCTTGCTGGTTTtcactgaaaacaaaaga
acggGTTGCAAAGCATGCTGAAGGCAATGTTAACAGTCGAACAGAGCGTG
TTTGGTAACTACGCTCGTTATTAAAAGCAAATTTGAACGAAATTTAAAGC
GCGCGTTTTTTTATCGGTTTAgtttaaacccccccccctgcccTATATTA
TAAAGCGTGGTTATCTtcttaattcaaaaagaaaaactgaaaacttttta
ttgaaaatgatAGAGAACTTCTTTCTGGAGAAAATAAAGCCTAAAGATAA
ACAATTGTATTAACAAAGCTTCTCTTTTCTTCTCTTAACTAAGATTTTTC
TCAGAATAATAAAGCTCTTTTCAAATTAAACTGCTAGCTATCCACTATGA
GACTTCTGTAAATATTAGACTTCTGATAAGATTTTTATATCCCCTTAAGA
TATGTAGTATGTAGGAATGCTATGaccaaaaaaataatcaaatttctCAT
TCATTTATGAAGACGTGTATTGTAGTagtttttttctcgaaaaaaatgta
ataatTTTCACTTTAATGTTATAGATAGAATTATAGgctttaattttttg
aatttcttatttttgagtGAAGGTTAACGGCTAGAAGGGGGCATTTTGGA
AGAGCTTTGCATTTTAGTAGAGTTTTTGTAGAAATGGTCCTTCAGCTCGA
AGAGTGTGGTGTGAGACATCTATCCTATTAcatgcaaaaaaattaattaa
agttGGCTTTCCTGCTGTCCACACCGCTTTCTTCTTTATTAGATAATTAT
TGTCTTGCTCCTAAAGTAATTTATATTTACACAAATAATCCCAAAGCAAT
TATTACAAGTTTTTTAATATTCCTTTTTTCCATGATGATTATTTCAAGTA
GATCGTAGTAAATTGTAAAACCATTTATTTTAGAATTTCGTAATCTATTG
TGAAACCTTTTctgaactttttttctcagaatTCATGATATAGAGTATTT
ATCCTACAGGATTAAAATTCTCTTGTTACTCAAACTGTCGCTAACTAAAC
CAGCTAGTAATAGTGTCGTGTTATTTTCTAGTGTTTTTTTCATATTGGGT
CCCATTTTTCGTGTTACTTTGATATAAAAAGTATAAAGTGTTATCTTTTC
ccttattttttaaaatttactaTTATTGATAAATCATTATTAATTGATAG
CTCCCGAAAACTACATTATGTATATATGTAAGAACCCTTGTAaattttta
cataaaatttgTTGTTTCTTCCTAAAAGAGAGAATAGAATTACAAAAGTA
AAAATATCTAAACATTGGCTCATTTAATTCATTGTTATTCTCCTTCTTTT
GCACTTTTCGAACCTGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00011106TCONS_00011106Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00011106-proteinTCONS_00011106-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:410442..414459 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.51	28.22	14.22	16.82	189.44	133.71	94.86	108.39	53.3	61.47	31.7	30.23	25.45	23.05	43.35	58.76	58.13	56.54	23.81	26.18	40.51	44.03	30.98	36.87	46.57	52.97	33.73	23.46	25.3	26.2