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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011081 ID=TCONS_00011081|Name=TCONS_00011081|organism=Clytia hemisphaerica|type=transcript|length=2229bp
acTGATTTCAAGAAATGTTCACTCAGCGCTCAAAGCGTCATCATGATTTT
GTTTCTACTTCGTTTTTATAATCTAAGAAAtctttgaaataataaaattc
aatcAACATTGTAAGAAGACCAGCAAGCAATACCACCATCGCCAGCCAAG
AGATTCTGCAGTACCTTGAAGAGGACCACGAAACAGAATCACCATGTCTC
TATTAGGAGAGAGTATCTCAGCTCTGGTGGCGATCAAGATCAAGCGACGT
TATGATACCTTTACTGATCAATACAATCGAATCTTCATGGTGAAAATGAC
CATATTGTTTTCAGCTTTCATTGGATTCAACTATTTCCAGGATAAAGTGT
CGTGTATTGTGGCCAATGTCAATGGCATGGATGGTGGGTTTGTTGGAAGT
GCTTGCTGGATTCAAGGTTTTTATGTGTTTGACGAGATGAGAGATCGACT
TGATGAATCTGGATACTATGGTATCCCAAAGAATATGGATTATGATGGCA
TCAATCCTCTTGGTCAGTTATGCTCCACTGTTGATCGTGCCTTGGACAAA
GTGACCGAATGTCAACCCATGCAAAGGTTGTATTATCTTCAATACCAATA
CATGCCTTTCTTCACTGCATCTTTggctttctttttctatttgcCTTACA
TTTTGTTCAAGACGGTCAACTTCGATATCATCAGTTTGCGAGATGAGATT
AAAGATGGTGAAATGTCTGCTGATAAGATCTTCACCAGTTATTTTGACCG
TATCGTGAACAACCGACGTCGCATGCGATACAAGTCCATCTTGAATATCA
TAATCAAGCTTATGTACTTGATCGCGAACGTCCTCGCATTCGAAGCCTGC
GATTCAATCCTGCACGGTGACTTCCGTAGCTACGGAACCGAGTTTGCTAA
ATGGGTCAAATATGAGAATTTCGAACGCCACGACCATAACCTGAAAGTGC
GTGCTGTTCCAAAACCAGGCAACATTCTGCTTCCACCAATGGGGTTCTGT
GATATCCATGAAGCATCGCGTGATGTTCGAAACACGCACATTAACACGCA
TCGCTTCATATGTGAGATTTCGCCGCACGTTTTATACCAATATGTTATGT
TGGTTTTCTGGTTTCTCCTGGTGATTGGTATCGTCATCTCCATCCTTGGT
TTCTTCCAACACATTATGGTGCACATTGCAAGCTATATCCAAATGAATCG
CCATGACCCTACTGGTAAACTCTACCGAGTTTTAACCTTGAGAGAGATTG
ACTACCTTGATATCCTACGATTGAAAAGCACATCTCAATATGGTACAGTC
TTGAAGAAGATCAGAGAGGATCGGTTAGATCATGTCGTTGATGAAACAGA
GAAACTATACCCAGGCAAAGATACCATGTTTTAAAGCAAGCAGAACATAT
TTTAAAGTCCGTCCATTTTCATCTACATAATCGTTGACGATTTTTAATGa
gattcttttttctttccactattgggctgttccattagaAACCGTACAGG
GGGtaggacgaaccttttcaagttagaaaaaattattgtaaatattgaaa
atggcaaaatttgcaaaaatatcctttgaaaaattattttcataccttaa
aatgagggtggacgaactaaaatcccCTGGAAATCTTAGAATAACTTCTT
ACCCCCTAGGaaaaataccccctggaaagtttttatggatataaaatgga
atggcccattttttACGATGAGAATACTAGTACAacaattgtaaaaaaaa
acagtatcTAGATGAAAGTGGACCGACTATGATTTAAAAGGGCCAGATTT
TGAACATTCAAGCAAACTGTCCTCGATAAAATTGCAGTGATTGTGCAAAC
CTTTAAAGATTTCTAAACTTAACTACTGTAATGCTTCATGTCTTGGGTAG
ATTATATTTTTGTGGACTATGTAAATTCTCTGTGAAAATCAACTCATGTC
CCTTAGATAATATCATACTTAGtgaatttttctcgaaaattgggAACCTA
AATACCCTGTGTTGATTAATTTTTGTAATGTATCTAAAATTAAGATTAAA
AAtgccaatttttttcagttatttttcattgcttAGCTTTTTTCATCTAC
TTTAATGACCAAAAAGAATCACTGTATGAATTGTAAACATATCTTTTGTA
ACTATCATatctattttttgataatttaccattttttttaCCGTACACTT
TTTGActctttgattaaaaaaaaaacaac Run BLAST on NCBI transcript from alignment at sc0000121:149040..152261+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011081 ID=TCONS_00011081|Name=TCONS_00011081|organism=Clytia hemisphaerica|type=transcript|length=3222bp|location=Sequence derived from alignment at sc0000121:149040..152261+ (Clytia hemisphaerica)
acTGATTTCAAGAAATGTTCACTCAGCGCTCAAAGCGTCATCATGATTTT
GTTTCTACTTCGTTTTTATAATCTAAGAAAtctttgaaataataaaattc
aatcAACATTGTAAGAAGACCAGCAAGCAATACCACCATCGCCAGCCAAG
AGATTCTGCAGTACCTTGAAGAGGACCACGAAACAGAATCACCATGTCTC
TATTAGGAGAGAGTATCTCAGCTCTGGTGGCGATCAAGATCAAGCGACGT
TATGATACCTTTACTGATCAATACAATCGAATCTTCATGGTGAAAATGAC
CATATTGTTTTCAGCTTTCATTGGATTCAACTATTTCCAGGATAAAGTGT
CGTGTATTGTGGCCAATGTCAATGGCATGGATGGTGGGTTTGTTGGAAGT
GCTTGCTGGATTCAAGGTATACTGTctttgataagttttgatatgttaAC
CAAGCTCTAGGTTCTTTTGCATAAGAATTACTTGTACCGTTTTATTGTTA
CTCAATGAGTGGAGTTGGATATTTGGGTAAAATCAGGCTGCtgacatcca
ctaacggattcgtgttCCTTATATACTACCCACGTCTTTGTAGAGgtttg
cgattcagactatggGTAAATGTATTAGATTCTGTGTTATATACCTCTCA
AGGTTTTGATTGGTAGCCACGTGTAAATGAAATGGTCTTAACAACGGTCA
ATATgcgtttattttttattagctTGTGCTAATCTTAAAATTCTCTCTGA
TAGATTTGGTAAGAATTATTCTAATTCCGAAATAGGTGCCATTTTTGACT
TTACTACATTTCAGGTTTTTATGTGTTNNNNNNNNNNNNNNNGATACCTT
TACTGATCAATACAATCGAATCTTCATGGTGAAAATGACCATATTGTTTT
CAGCTTTCATTGGATTCAACTATTTCCAGGATAAAGTGTCGTGTATTGTG
GCCAATGTCAATGGCATGGATGGTGGGTTTGTTGGAAGTGCTTGCTGGAT
TCAAGGTATACTGTctttgataagttttgatatgttaACCAAGCTCTAGG
TTCTTTTGCATAAGAATTACTTGTACCGTTTTATTGTTACTCAATGAGTG
GAGTTGGATATTTGGGTAAAATCAGGCTGCtgacatccactaacggattc
gtgctccttatatacTACCCACGTCTTTGTAGAGgtttgcgattcagact
atggGTAAATGTATTAGATTCTGTGTTATATACCTCTCAAGGTTTTGATT
GGTAGCCACGTGTAAATGAAATGGTCTTAACAACGGTCAATATgcgttta
ttttttattagctTGTGCTAATCTTAAAATTGTCTCTGATTTATATAGAT
TTGGTAAGAATTATTCTAATTCCGAAATAGGTGCCATTTTTGACTTTACT
ACATTTCAGGTTTTTATGTGTTTGACGAGATGAGAGATCGACTTGATGAA
TCTGGATACTATGGTATCCCAAAGAATATGGATTATGATGGCATCAATCC
TCTTGGTCAGTTATGCTCCACTGTTGATCGTGCCTTGGACAAAGTGACCG
AATGTCAACCCATGCAAAGGTTGTATTATCTTCAATACCAATACATGCCT
TTCTTCACTGCATCTTTggctttctttttctatttgcCTTACATTTTGTT
CAAGACGGTCAACTTCGATATCATCAGTTTGCGAGATGAGATTAAAGATG
GTGAAATGTCTGCTGATAAGATCTTCACCAGTTATTTTGACCGTATCGTG
AACAACCGACGTCGCATGCGATACAAGTCCATCTTGAATATCATAATCAA
GCTTATGTACTTGATCGCGAACGTCCTCGCATTCGAAGCCTGCGATTCAA
TCCTGCACGGTGACTTCCGTAGCTACGGAACCGAGTTTGCTAAATGGGTC
AAATATGAGAATTTCGAACGCCACGACCATAACCTGAAAGTGCGTGCTGT
TCCAAAACCAGGCAACATTCTGCTTCCACCAATGGGGTTCTGTGATATCC
ATGAAGCATCGCGTGATGTTCGAAACACGCACATTAACACGCATCGCTTC
ATATGTGAGATTTCGCCGCACGTTTTATACCAATATGTTATGTTGGTTTT
CTGGTTTCTCCTGGTGATTGGTATCGTCATCTCCATCCTTGGTTTCTTCC
AACACATTATGGTGCACATTGCAAGCTATATCCAAATGAATCGCCATGAC
CCTACTGGTAAACTCTACCGAGTTTTAACCTTGAGAGAGATTGACTACCT
TGATATCCTACGATTGAAAAGCACATCTCAATATGGTACAGTCTTGAAGA
AGATCAGAGAGGATCGGTTAGATCATGTCGTTGATGAAACAGAGAAACTA
TACCCAGGCAAAGATACCATGTTTTAAAGCAAGCAGAACATATTTTAAAG
TCCGTCCATTTTCATCTACATAATCGTTGACGATTTTTAATGagattctt
ttttctttccactattgggctgttccattagaAACCGTACAGGGGGtagg
acgaaccttttcaagttagaaaaaattattgtaaatattgaaaatggcaa
aatttgcaaaaatatcctttgaaaaattattttcataccttaaaatgagg
gtggacgaactaaaatcccCTGGAAATCTTAGAATAACTTCTTACCCCCT
AGGaaaaataccccctggaaagtttttatggatataaaatggaatggccc
attttttACGATGAGAATACTAGTACAacaattgtaaaaaaaaacagtat
cTAGATGAAAGTGGACCGACTATGATTTAAAAGGGCCAGATTTTGAACAT
TCAAGCAAACTGTCCTCGATAAAATTGCAGTGATTGTGCAAACCTTTAAA
GATTTCTAAACTTAACTACTGTAATGCTTCATGTCTTGGGTAGATTATAT
TTTTGTGGACTATGTAAATTCTCTGTGAAAATCAACTCATGTCCCTTAGA
TAATATCATACTTAGtgaatttttctcgaaaattgggAACCTAAATACCC
TGTGTTGATTAATTTTTGTAATGTATCTAAAATTAAGATTAAAAAtgcca
atttttttcagttatttttcattgcttAGCTTTTTTCATCTACTTTAATG
ACCAAAAAGAATCACTGTATGAATTGTAAACATATCTTTTGTAACTATCA
TatctattttttgataatttaccattttttttaCCGTACACTTTTTGAct
ctttgattaaaaaaaaaacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011081-exon-sc0000121-1491911889:149040..149455 | TCONS_00011081-exon-sc0000121-1491911889:149040..149455 | Clytia hemisphaerica | exon |
| TCONS_00011081-exon-sc0000121-1510915933:149040..149455 | TCONS_00011081-exon-sc0000121-1510915933:149040..149455 | Clytia hemisphaerica | exon |
| TCONS_00011081-exon-sc0000121-1575043694:149040..149455 | TCONS_00011081-exon-sc0000121-1575043694:149040..149455 | Clytia hemisphaerica | exon |
| TCONS_00011081-exon-sc0000121-1491911889:150449..152261 | TCONS_00011081-exon-sc0000121-1491911889:150449..152261 | Clytia hemisphaerica | exon |
| TCONS_00011081-exon-sc0000121-1510915933:150449..152261 | TCONS_00011081-exon-sc0000121-1510915933:150449..152261 | Clytia hemisphaerica | exon |
| TCONS_00011081-exon-sc0000121-1575043694:150449..152261 | TCONS_00011081-exon-sc0000121-1575043694:150449..152261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:149040..152261 + |
Blast
The following BLAST results are available for this feature:
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