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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011055 ID=TCONS_00011055|Name=TCONS_00011055|organism=Clytia hemisphaerica|type=transcript|length=1581bp
TTAGATTAGTTGAAAATGGTGAATTTTGTAGATTGATGCTTTGTTGAAAA
GAGTTCCTCAACAAAATGGACGATGAGAATGATGAAGAAAGGAGTGTTTC
ATTGGAAACTGGAGAAGTTGAAGATGCCTTTGGAGAAACATTTATCCCCT
CCATATCAGACCGTTTACAAATTGGGTATGCTGCATCTGATAAGGCCTGT
CAAACACAAGCAAGTGAGATTATTAACctcaaaaaaatgtcagatGTGCT
TGGAATTGTGATAAAGGATATTTCCATGCTGAAGAGGAGCCTCTACTTTT
CAAAGTTGACATTGCAAGCTGAGTATGATGGCAGATTGGAAGCTGTTGCT
TTTGAGTTGTATAACCGTGTCAATAAACGTGTTGCTGAAATTGAAGCTAT
TCATAAAGAGCGCATTGATGTCATCCGAAGGAGCTATAAACAACAAATGT
CCAATGCTTTAGCCAAGCTTTCACGtgattatcaaattttttatgGAGAT
AAGGATGCTATTCTGGAAGCTGAGAATCGTAAGAAATTGGAAGAGATGAA
TCGACACAAAGAGATGATGAGAAAAAACGAGTTAGCTCAGAAAGAGATGT
ACGAAATGCTGCAAATGCAGATGGAAGAAGATAAAGCTAAACAAGAGATA
GTACCTTCACGTAAAAGTTCAGCTGCATCTATAGGTGGCTTCCTGGATGA
AATCGATGAGCTTAATACAGTCATAAAAGcAACAATAATatatcaacaac
aaaaaattcatcaagtaACTTTGCAATACACAGTGGATAAGgactttgtt
tttgaaatcttgTGCTGAATaccattttcataaattaccaTCATGGATAT
TCAAAAACAGATCCAGCAAGATTGGGAGAATCGAGAATATATTGAAGCTA
TTACGTCAGCAATAAAAAAGATGGCAactttcttgaataactttgaCATT
GCTTGTAAATCGAAACTTGCAGATTTGGACACTAAATTAACTGGACTTGA
ACAGAAAATTGAATTCATTGAAGCTAGAGTAACAAAAGGTGAAACTTTGT
CTTAATTTGGTAGCAGAGATTTGATATTAACTTTATggtaattttgtttt
ctttatgtGTAAATGTTTATAATGAAAATCGCGATTTAATTTGTTGTACA
ATTCTCAATTCGTGCTGTAAAAGATGTTGCATTGCAAAAAGATTCGAACA
TAATTCACACATGTTTTAAAAGCATAGAAAGATTTTCTCAATCTTCTTAA
GGCTGTTGCACCTTTGCAGTAGTGAATTTTAAAATGGCGTCAAGGGACAA
TATCTTCTTACGTTCCTTATTAATTTATTTATGTTTTGTTACGATTACTG
CATTTTTTGTATAATTATTTCTACTTTGGAAAATAGTCTATGTAATTTTA
TAGTTTTCGTCTCTACTAAAGTTTTTTAGACTCGATGATATGACAACATT
AGAATTATTTTGCTTCCAACAATAAAACTTCATCCCTCTTCCATGTTTAA
GAATTTGAATGGCTGTTAGCATTTTCTAACAAAAGTACTTTTATAGATAG
ATATTTTGTTAATGTCTTGGTACTTGCGAAC Run BLAST on NCBI transcript from alignment at sc0000119:473775..477632- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011055 ID=TCONS_00011055|Name=TCONS_00011055|organism=Clytia hemisphaerica|type=transcript|length=3858bp|location=Sequence derived from alignment at sc0000119:473775..477632- (Clytia hemisphaerica)
TTAGATTAGTTGAAAATGGTGAATTTTGTAGATTGATGCTTTGTTGAAAA
GAGTTCCTCAACAAAATGGACGATGAGAATGATGAAGAAAGGAGTGTTTC
ATTGGAAACTGGAGAAGTTGAAGATGCCTTTGGAGAAACATTTATCCCCT
CCATATCAGACCGTTTACAAATTGGGTATGCTGCATCTGATAAGGCCTGT
CAAACACAAGCAAGTGAGATTATTAACCTCAAAAAAATGTCAGATGTGCT
TGGAATTGTGATAAAGGATATTTCCATGCTGAAGAGGAGCCTCTACTTTT
CAAAGTTGACATTGCAAGCTGAGTATGATGGCAGATTGGAAGCTGTTGCT
TTTGAGTTGTATAACCGTGTCAATAAACGTGTTGCTGAAATTGAAGCTAT
TCATAAAGAGCGCATTGATGTCATCCGAAGGAGCTATAAACAACAAATGT
CCAATGCTTTAGCCAAGCTTTCACGTGATTATCAAATTTTTTATGGAGAT
AAGGATGCTATTCTGGAAGCTGAGAATCGTAAGAAATTGGAAGAGATGAA
TCGACACAAAGAGATGATGAGAAAAAACGAGTTAGCTCAGAAAGAGATGT
ACGAAATGCTGCAAATGCAGATGGAAGAAGATAAAGCTAAACAAGAGATA
GTACCTTCACGTAAAAGTTCAGCTGCATCTATAGGTGGCTTCCTGGATGA
AATCGATGAGCTTAATACAGTCATAAAAGGTAACGAATCTCGTATTTATT
ACTTAGAAGAATGCTTGGAAGAAATTGGTTTGGAAAACAAGAAAATGACA
ACTGAATTGGAAGATAAAAATGAAAAATTACGTGCTGAAAAATTGAAATC
TGCTGCTTTGAGAAGGGATTTGGATGATTTGAAACAAGCTTTTGAACGTG
AAAAGGAGGAATCAAGATCAAGACTTGAAGCACAAAGAAAGAGTCTAACA
ATTGAGATGAAAAATCGTTTGGATGAACAGAAAACTGAACATCAAAGGGA
TTTAGGCCAGAAAATGGAAAGCTTGAAAGAAGGACAGAATGAACAGATGA
GGCACCAAAAATTCGCTGAGGAAGCTCGTTTGAAAGCAGCTTTGGCTAAG
CAAGAAGAAAACAAAGTTGTAGTTGAAGTCCCTACTGAAGATACTGACTT
ATCAAGACTCCAAATGTTAGAAAAGAGACAGCGTGCAGAAATTGCTCGAT
TATACAAAAAGCTAGAGGCGTTATCTGCAGTATCTGATATGAAGATAAGA
GTGTTAAATGAACATATTCATTCATTGAAAGATGAAATGTTCTTGAGGCA
AACTTTACATCGACAAACGGCAAAAGTCAAACAAGCTACAGTGACCTATG
TGCGTCGCGGATCAGAGATTGTTCCTATNAAATTACTTTTTATACTTTGA
TACATAAATATACGTATCTATTCTTAACACTTTGAAAACCTTTTGGATTA
ATCATAATACTATTCAGTAAAGACAGCTAAGGCCTTTGAAAAATAAAATT
TATGCTACGTCAAAAAAAACATTACTAGGTAATTACTTTCAGTTACAGGA
AGTATACCTCCCCGACGGAAATGTTTCAAAAGAGAGGGGGTCCAACCAGG
TCTATAACTTAAAATATACATACTCCTAAATTTTAATTCTCGTGGAGTGA
TTTCTGTTCCATAGTTAATATTTTTTAAAGTTCATAATATATATTTTTGT
GTAATATTTTNGTTCGTAGACACGTTTTGCCAAGTATCATAAGCGCTCCT
TCCACCGCCAATTCTGTGAATCCAATTGATTCTGTTCAACAAGTAAAAAA
GCAATAGAATGAGTGTATATTGACCCAAAGTCATTGAACGTTAACACAGA
CTGAACACTTCTGAATGATTTTCAAGTTGCTCTTTTAATTTTGTTCTCGT
AAACTTGTTAATTATTTCAAGGGGCTCTGATATAAGTTTAACCTCTTGCT
TCCAACCGTAATACACGTTTTTTTATAAGAACAAACTATATAAGAACATA
AGCTTCGAGGCCCAAAAATTTAAGAACATACTAAGGCTTTGGAAACTTAA
AAACATGCAATTTCTTAAGAAATTACATCAAAATGCTCAAACAATGCTGA
AAATAAGAACATTTTAAGAACATTTTTAGGCTTCAAATCCAAAAAACTAA
GAACATCCGAAGGCTTCGAAAATTTTTGACGTTCTTATAAAAAAAAACGT
GTACCTTAGTGCCAATGACCTGATCACTTGTTAGTTTAATTGAATGAACC
AATGGGGATGATAAAAATATTTCCCTTTTAATATTTAGGTGGGGATTTCG
TATTTGATTGTTTTTAGTTGCGATAGTGCTTCAGCCCTAAAATTCTTATG
TGTTATTCTTATGTGTTACCCAAGAATTACTTTTTATACTTTGATACATA
AATATACGTATCTATTCTTAACACTATTTGAAAACCTTTTGGATTAATCA
TAATACTATTCAGTAAAGACAGCTAAGGTCTTTGAAAAATAAAATTTATG
CTACGTCAAAAAAAACATTACTAGGTAATTACTTTCAGTTACAGGCAGTA
TACCTCCCCGACGGAAATGTTTCAAAAGGGAGGGGGTCCAACCAGGTCTA
TAACTTAAAATATGCATACTCCTAAATTTTAATTCTCGTGGAGTGATTTC
TGTTCCATAGTTAATATTTTTTAAAGTTCATAATATATATTTTTGTGTAA
TATTTTTTAAAGTTCATAATATATATTTTGTGTGATATTTTTAAAGTTGT
TTATAATAGAGGTGTGTAATATTTTTACTATTTTCTTGTATCTATGATTT
TAGGTGCAGGTTTTTCTTGAAAACATTTCTTGTATTTTTATTAAAAACTA
AGGTTTTTAGCAGTGTGGAAACTCAATCCTTCTTGTTCTTGAATCTTGGC
TGAATAATTGTGTTTATACTCTAAAACGACTGAGAAAGTATTTTGATGTG
TTTTGGATACAATTATTTTGATTATGTATTTCATACATTTTTTTCGTTAT
TTTCAGCAACAATAATATATCAACAACAAAAAATTCATCAAGTAACTTTG
CAATACACAGTGGATAAGGACTTTGTTTTTGAAATCTTGTGCTGAATACC
ATTTTCATAAATTACCATCATGGATATTCAAAAACAGATCCAGCAAGATT
GGGAGAATCGAGAATATATTGAAGCTATTACGTCAGCAATAAAAAAGATG
GCAACTTTCTTGAATAACTTTGACATTGCTTGTAAATCGAAACTTGCAGA
TTTGGACACTAAATTAACTGGACTTGAACAGAAAATTGAATTCATTGAAG
CTAGAGTAACAAAAGGTGAAACTTTGTCTTAATTTGGTAGCAGAGATTTG
ATATTAACTTTATGGTAATTTTGTTTTCTTTATGTGTAAATGTTTATAAT
GAAAATCGCGATTTAATTTGTTGTACAATTCTCAATTCGTGCTGTAAAAG
ATGTTGCATTGCAAAAAGATTCGAACATAATTCACACATGTTTTAAAAGC
ATAGAAAGATTTTCTCAATCTTCTTAAGGCTGTTGCACCTTTGCAGTAGT
GAATTTTAAAATGGCGTCAAGGGACAATATCTTCTTACGTTCCTTATTAA
TTTATTTATGTTTTGTTACGATTACTGCATTTTTTGTATAATTATTTCTA
CTTTGGAAAATAGTCTATGTAATTTTATAGTTTTCGTCTCTACTAAAGTT
TTTTAGACTCGATGATATGACAACATTAGAATTATTTTGCTTCCAACAAT
AAAACTTCATCCCTCTTCCATGTTTAAGAATTTGAATGGCTGTTAGCATT
TTCTAACAAAAGTACTTTTATAGATAGATATTTTGTTAATGTCTTGGTAC
TTGCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011055-exon-sc0000119-1575043694:476904..477632 | TCONS_00011055-exon-sc0000119-1575043694:476904..477632 | Clytia hemisphaerica | exon |
| TCONS_00011055-exon-sc0000119-1575043694:473775..474626 | TCONS_00011055-exon-sc0000119-1575043694:473775..474626 | Clytia hemisphaerica | exon |
| TCONS_00011055-exon-sc0000119-1510915933:476904..477632 | TCONS_00011055-exon-sc0000119-1510915933:476904..477632 | Clytia hemisphaerica | exon |
| TCONS_00011055-exon-sc0000119-1510915933:473775..474626 | TCONS_00011055-exon-sc0000119-1510915933:473775..474626 | Clytia hemisphaerica | exon |
| TCONS_00011055-exon-sc0000119-1491911889:476904..477632 | TCONS_00011055-exon-sc0000119-1491911889:476904..477632 | Clytia hemisphaerica | exon |
| TCONS_00011055-exon-sc0000119-1491911889:473775..474626 | TCONS_00011055-exon-sc0000119-1491911889:473775..474626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:473775..477632 - |
Blast
BLAST of TCONS_00011055 vs. Swiss-Prot (Human)
Match: BRK1 (Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.014e-26 Identity = 46/68 (67.65%), Postives = 61/68 (89.71%), Query Frame = 3
Query: 849 IQKQIQQDWENREYIEAITSAIKKMATFLNNFDIACKSKLADLDTKLTGLEQKIEFIEARVTKGETLS 1052
+Q++I QDW NREYIE ITS+IKK+A FLN+FD++C+S+LA L+ KLT LE++IE+IEARVTKGETL+
Sbjct: 8 VQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVTKGETLT 75
The following BLAST results are available for this feature:
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