TCONS_00011051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011051
Unique NameTCONS_00011051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011051 ID=TCONS_00011051|Name=TCONS_00011051|organism=Clytia hemisphaerica|type=transcript|length=269bp
TCTAGTTATAAGtaatactaaaaaataaaaagcaaacaaTGGATTTCACT
GTGGTAACAAAGAATGGTTTAAACCACCCAAAACCTGACATAAAATTTAC
TTATGGAACTGCTGGATTCAGAATGAAagCTGACCTTTTGGATTCAGTGA
TGTTTAGAATGGGGCTTTTGGCAGTTCTCAGGTCAAAATGCAAAGAAGGA
AAATCTATTGGTGTTATGGTTACAGCCTCGCACAATCCTGAACCAGATAA
TGGAGTGAAGCTGGTGGNC
Run BLAST on NCBI

transcript from alignment at sc0000119:456663..457382-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011051 ID=TCONS_00011051|Name=TCONS_00011051|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at sc0000119:456663..457382- (Clytia hemisphaerica)
TCTAGTTATAAGTAATACTAAAAAATAAAAAGCAAACAATGGATTTCACT
GTGGTAACAAAGAATGGTTTAAACCACCCAAAACCTGACATAAAATTTAC
TTATGGAACTGCTGGATTCAGAATGAAGTAAGAATGACTTTACATGACTT
TTCATCTCTTCTGCATTTATTCTGACCTGACAAATAAGATTTGTCCTCAG
GAGCTATTATGAATTTCTATGAATTTTTTATATTTTTCAGAGCTGACCTT
TTGGATTCAGTGATGTTTAGAATGGGGCTTTTGGCAGTTCTCAGGTCAAA
ATGCAAAGAAGGAAGTAAGCTCTTAAAAGCTTATTTGACTAGTCCTTGTA
AGAGGAAACCTTTTTTTGTTACTTTTAATTGTGTATGTCAAATTTGTCCA
ACAAAAATAGAATAAAGACAGTTTTGTACCTTTTCTATGCGTATGGGAAT
AAATCCACTTTTTTTTCCAACAGTATACTGTCCTGAGGATGTTTTGTTTA
ATTGATTTCCAATTTCTTCTTGATTCAGAATCTATTGGTGTTATGGTTAC
AGCCTCGCACAATCCTGAACCAGTAAGAAAAATCCTGATGTTTAATTTCA
TACCAGTTTATTAACAGATTACAATTTAAATCAAAGAGTTTGAGATGTTC
AGAGATTGTATTGTTCTCTTGACTGTAAATTTCTTTTTGAATTCAGGATA
ATGGAGTGAAGCTGGTGGNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006192XLOC_006192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011051-exon-sc0000119-1575043694:457256..457382TCONS_00011051-exon-sc0000119-1575043694:457256..457382Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1575043694:457069..457142TCONS_00011051-exon-sc0000119-1575043694:457069..457142Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1575043694:456811..456854TCONS_00011051-exon-sc0000119-1575043694:456811..456854Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1575043694:456663..456686TCONS_00011051-exon-sc0000119-1575043694:456663..456686Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1510915933:457256..457382TCONS_00011051-exon-sc0000119-1510915933:457256..457382Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1510915933:457069..457142TCONS_00011051-exon-sc0000119-1510915933:457069..457142Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1510915933:456811..456854TCONS_00011051-exon-sc0000119-1510915933:456811..456854Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1510915933:456663..456686TCONS_00011051-exon-sc0000119-1510915933:456663..456686Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1491911889:457256..457382TCONS_00011051-exon-sc0000119-1491911889:457256..457382Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1491911889:457069..457142TCONS_00011051-exon-sc0000119-1491911889:457069..457142Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1491911889:456811..456854TCONS_00011051-exon-sc0000119-1491911889:456811..456854Clytia hemisphaericaexon
TCONS_00011051-exon-sc0000119-1491911889:456663..456686TCONS_00011051-exon-sc0000119-1491911889:456663..456686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:456663..457382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.651	7.43212	69.6863	95.9945	271.528	208.527	213.049	238.803	138.17	198.389	71.8719	59.718	19.6377	19.1337	71.902	80.1265	88.0512	65.2829	8.87233	21.3924	28.3986	14.8566	33.798	33.2882	23.9333	25.5086	67.6102	45.3988	33.2815	41.9735
Blast
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BLAST of TCONS_00011051 vs. Swiss-Prot (Human)
Match: AGM1 (Phosphoacetylglucosamine mutase OS=Homo sapiens GN=PGM3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.414e-24
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 3 
Query:   39 MDFTVVTKNGLNHPKPD-IKFTYGTAGFRMKADLLDSVMFRMGLLAVLRSKCKEGKSIGVMVTASHNPEPDNGVKLV 266
            MD   +TK    H KP+ +   YGTAGFR KA+ LD VMFRMGLLAVLRSK +   +IGVMVTASHNPE DNGVKLV
Sbjct:    1 MDLGAITKYSALHAKPNGLILQYGTAGFRTKAEHLDHVMFRMGLLAVLRSK-QTKSTIGVMVTASHNPEEDNGVKLV 76
The following BLAST results are available for this feature:
BLAST of TCONS_00011051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGM11.414e-2466.23Phosphoacetylglucosamine mutase OS=Homo sapiens GN... [more]
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