TCONS_00011020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011020
Unique NameTCONS_00011020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1025

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011020 ID=TCONS_00011020|Name=TCONS_00011020|organism=Clytia hemisphaerica|type=transcript|length=1025bp
CAGGTATCGCAGTAAATTcatcgaagaagaaaaaactagAACGTTCTCCA
TGGCGCGCCGAAACTCACAAAACGCTACGACCTCGTCGTCAAGGATACGC
TCGCAAACATTATTCTATTTAGAACGTGATCCGCTGGTTGACGCTGACTT
CACTCTTCATATCAGTAAAGTGACCCACATTGATGCAAACACGTTTGAAG
CTGAGAGATCACGTCATTTTATTGCGTATTGTTGGGAAAACGAGTTTGCA
GATGATTTGGACTCGATGTACCAACAATTTGTAGGGGCTTTAGTGGAGCA
CGTGATGAATAAGTTTGGGCACATGAGGCGAAGCGGGATAAATCGTAGCG
ATTTAAGTCGAGATCAGATTTTCGCAATTATCGAAAGCCACTTGATTCCA
CACGTTTATGACTGCATCCAAAAACATCatcctgatgacgtcatcatgaa
aCATCAATACCTTGAACTAAGAAGCAAATCTCAAAAGGACCTTGGAATAC
AGGCTTGTTATATTGATCACAGCCTTGTCCCGTATCACGATGCAATCTCT
AAGTTACGTGAGATCAGCCTAGTGAAATTACCTACGCAAAAACTACGCTC
GATCATTTTGGCTTCACAGAACGCGGTCAAACGAATGAACGAATTGTGTT
CTGATGAAGAAGTAGTAGCAGGAGCAGATGAATTCATCGACATTTGGGTT
TACATCACGATACAAGCCTCTGTTCCAGATCTCTGTTGGGATATCCAGTA
CCTTAAAGCTTTCTCAAATCCAAACTACATGCTCTCGGAGACAGGCTATT
ATTTATCTAGCCTGGAAATGGCAGCTGAATACATAAAGAGGCTAGATAGT
ATGGACTCGCTTGATAGTGGAGTTATCGAGTCAACACCTGACCAACCGAC
ATATTTACTTCTCCCTGATGTGAATGTCGCGCGAACACTTTGTGAGCGAG
ACGGACGCCTTTTCAAACTTGTGGACGAGGAATATGTGTTAGAAGGTTAC
CAGTATGCAACAAATCTAGATATGA
Run BLAST on NCBI

transcript from alignment at sc0000119:75587..77574-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011020 ID=TCONS_00011020|Name=TCONS_00011020|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at sc0000119:75587..77574- (Clytia hemisphaerica)
CAGGTATCGCAGTAAATTCATCGAAGAAGAAAAAACTAGAACGTTCTCCA
TGGCGCGCCGAAACTCACAAAACGCTACGACCTCGTCGTCAAGGATACGC
TCGCAAACATTATTCTATTTAGAACGTGATCCGCTGGTTGACGCTGACTT
CACTCTTCATATCAGTAAAGTGACCCACATTGATGCAAACACGTTTGAAG
CTGAGAGATCACGTCATTTTATTGCGTATTGTTGGGAAAACGAGTTTGCA
GATGATTTGGACTCGATGTACCAACAATTTGTAGGGGCTTTAGTGGAGCA
CGTGATGAATAAGTTTGGGCACATGAGGCGAAGCGGGATAAATCGTAGCG
ATTTAAGTCGAGATCAGATTTTCGTAAGTACCAGCTTTATCATGCAATCA
CTGTTATTGCCTGATTTTGATGTGTTGACGCTCTCTTATTCGAGGTTTTG
CTATCTGATTCATCCATTTCTCGATATTATTGAAAGCCATTTTCAATAAG
AAACTCTCATATTAGACGCTCTATTTTTCGTTACACTCCCATATTCGATG
AAAATACAATTCCCCTAAAAAATCAAATAAGAGAGCGTCAATCGTATTCG
ATTGGCATCTTTTTTTAAACGTGTGTGTGATTTACCTCAACTCGTATTCG
ATGGAACTCACGACAAACAGTCATTGAATCTGGTTTGGTTTCAAACCTCA
AGTGACCTTAACCGAATTTACACCCTACGCTTATCGTCCCATTGTAGGAT
CCACTTTATGACCTCTCTTGCAGGCAATTATCGAAAGCCACTTGATTCCA
CACGTTTATGACTGCATCCAAAAACATCATCCTGATGACGTCATCATGAA
ACATCAATACCTTGAACTAAGAAGCAAATCTCAAAAGGACCTTGGAATAC
AGGCTTGTTATATTGATCACAGCCTTGTCCCGTATCACGATGCAATCTCT
AAGTTACGTGAGATCAGCCTAGTGAAATTACCTACGCAAAAACTACGCTC
GATCATTTTGGCTTCACAGAACGCGGTCAAACGAATGAACGAATTGTGTT
CTGATGAAGAAGTAGTAGCAGGAGCAGGTAACATTTGATAAGTCATACCG
CCTCCCCATCTGGAAGATACCTATACGATTAATCAGCGAGTTTATGTATT
TGCACTTTTGAGGACGGCTTTTGAGTGACTGAAGCGATTTGGAATAACCC
ACAGTTCTGTCCCGCAAGATCGACGACGGTAAAAACGCTTGTTTACCGTC
GTCTTCAGTCGGTCAGGATGTCGACAAATCAGAAGCTTGATGTCTCTGTT
GCAGAAAAACACATACAGAAAACTCGCTACTATTAATTGCCCTAACCAGC
CCTGTTCTTTTGAGTTTATGAATGAAGAGACAAAATGATGATACACTAAA
CTTTCTCTAATTCGAACTTAAATATTAGTCCACTCAGCTGAAAAGTGGTT
TGGTCAACTGTATTAAAATTGAGAAGTAGGCTGGCCCTATTTCGGGAACA
CAAGGATAGCTTCACGTTTTTCGTTTTCTTTTACGAAAAAGAAAAATATG
ATGATAGCTTTTGATACCCTAGCCATTTGGTACTCGTTACACAAACTCGT
GAAGACCTTGTTAATAATTTCTCCCTTTCTTCCCTTACAGATGAATTCAT
CGACATTTGGGTTTACATCACGATACAAGCCTCTGTTCCAGATCTCTGTT
GGGATATCCAGTACCTTAAAGCTTTCTCAAATCCAAACTACATGCTCTCG
GAGACAGGCTATTATTTATCTAGCCTGGAAATGGCAGCTGAATACATAAA
GAGGCTAGATAGTATGGACTCGCTTGATAGTGGAGTTATCGAGTCAACAC
CTGACCAACCGACATATTTACTTCTCCCTGATGTGAATGTCGCGCGAACA
CTTTGTGAGCGAGACGGACGCCTTTTCAAACTTGTGGACGAGGAATATGT
GTTAGAAGGTTACCAGTATGCAACAAATCTAGATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006175XLOC_006175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011020-exon-sc0000119-1575043694:77202..77574TCONS_00011020-exon-sc0000119-1575043694:77202..77574Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1575043694:76498..76801TCONS_00011020-exon-sc0000119-1575043694:76498..76801Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1575043694:75587..75934TCONS_00011020-exon-sc0000119-1575043694:75587..75934Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1510915933:77202..77574TCONS_00011020-exon-sc0000119-1510915933:77202..77574Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1510915933:76498..76801TCONS_00011020-exon-sc0000119-1510915933:76498..76801Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1510915933:75587..75934TCONS_00011020-exon-sc0000119-1510915933:75587..75934Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1491911889:77202..77574TCONS_00011020-exon-sc0000119-1491911889:77202..77574Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1491911889:76498..76801TCONS_00011020-exon-sc0000119-1491911889:76498..76801Clytia hemisphaericaexon
TCONS_00011020-exon-sc0000119-1491911889:75587..75934TCONS_00011020-exon-sc0000119-1491911889:75587..75934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:75587..77574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0493926	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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