TCONS_00010988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010988
Unique NameTCONS_00010988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3075

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010988 ID=TCONS_00010988|Name=TCONS_00010988|organism=Clytia hemisphaerica|type=transcript|length=3075bp
TAACAAAGATGACGTAATTGTAACACTCTTCCTTTGAAGCAATTCTTCAT
ATGTATAAATTTGTTCTCTGCCGCAGAGCTTTTCCGTTAAAGATAAACAT
CCCAAACGGGAAAAGTTATAAAACTCGAGGATTTGATTTTGAAGTAGCAA
GTAGCTTCTAGCATCACCAGCcaaggaaaggaaatttgaaaggaaaagtT
AACTAAAAGAATATGGATCTTCGTCCATTGATCTTGGCTGCCCTTGTTGC
AGTCGTTTTTTCACATAGGCATCCGAAGATTGGtgttttggaaagaaatg
tcCATTTGAAAGTTGgaaatcaagattttgagaATGAGCTTGTtggtttt
ccaaaaaaagttcaaaatgaaaTGACAACTGCAGAATAAATTCAAATGAT
GAATTCCGGTCAAAGTTTGACGAATTTGTTAAGTCTTCTTCAAGAAGTGA
CAAAAGCAAAGCTCTCCCAGATGACCAGTATGATGATATTGTGAAGGTAC
TGAAAGATGGACATGGGGACAAAATACTTAAAAAGAAAATCAGGAGAAAT
GGTTACAAGCTGATGAACTATCCGAAAATTGGACTGAAGGATGCCCTATT
TATACCATTAAAGgaAGGAAAGAGTAATGAAAGGAAGAAGATCAAAAAGA
AAGATGTGGTGGATGGTAATGAGCTAGATGCAAAAGAAATGAAAGGAGCT
AGGAATGAAGTCACTGAAGAGAGAGCAGAGACCATCAAATTAACTGATAA
TTCCCTGTTCTCAAATCACAGAAAGGTTTTTCGCATAAATGAGATGTTTG
ATCTTGTCAAGGAATGCCATTCAAGTGAATCTGTTCATGCTGGTGAAAAA
AAAACCTATCAAAATGTTTGCCAATTTGCATGTAATGTTTCGATGGCTAT
TGTAAAGTTCTTTATTGAAAACTGCGTTCCGTGTTCTTCAAAAAAGCCAC
AACTATCTGTTGCCAAGCTCACACCTATTGTATCAAGATTTTTCATGGAC
AGGATGCAGattgACCTTATCGACATGACTCATGACCCAGACGAGAAATT
TCGATACATTGGTCATATTGTTGACCACTTCTCCAAATATAGGGTTATTT
TTGCTCTTAAGTCAAAACAGCCGGCAGAGGTAGGTCTTCATGTGAAAGCC
CGTTATCTGGCATATTTTGGTCTGCCAAAAATTGTCCAATCAGATAATGG
GGCTGAATTTGTGGACCTAATAATCAGAGCTATTATTGTTCTCTGGCCTG
GAAACGCTCGAATCATCAACGGTTCACCAAGGCATTCTCAATCACAAGGT
TTGGTAGAGCAAGGTAACTGCGacattgaaaagaaaatcagtgCCTTGAG
AGCTGAACGAAAGTGCAAATCCTGGGTAAAACTGCTACCTGAAATCCAAT
ATGCTATGAATACAACAGTCGTTTCGAGTACAAAAAAAACGCCATATTCT
ATTGTGTTTGGACAACATCCTAATAGACTGGCAGCATTCGGCGTGAAGTT
TGACGAACCGGTCATAAACGAAGAAGAACTCCGTGACATTATTGTTCCGG
TTGCCCAAGATACTTTGGCAGAGGCAGAGGCAAAGGCAGAGCCAGAGACT
GTCCAGGAAAATGATGCAGCCTCTAGCTTCGAACCAACGTGTTCTAAACG
GAAAGCCATCAGAGATGAAGTCAACTCCAACTTGGAACTTAGCAGAAACA
AGATGCAGGAAAAATACCAAAGAAAGAAGGGAAAAAGGGTTGCTAGTTTC
AGTGTTGGAGAACATGTTGGTTTGTTGATTccggaaaaaataagaaaaaa
agctgACATCAAAAGATTACCCTGTATTGTCCTCCAAAAGTCGAATAACC
GTCACTGTGAAAGCTTTTCTTTGATGAGCGAGTATGGGATCTTGAATGGA
AAATTCACAGCATCAGAATTAGAGAAGTACCCAGGTCAGGTTAATGGTTT
GGATGATGTCAAATTGTCTTTAAATGCAGCATCACTAAAATTGCTTGGAA
AAGAGGCAATTTCCTGCAAATGTTCAACATTTTGTTCAAACAACTTGTGC
GTTTGTTTTAAAAATAGCGTACCTTGCTCGTCAAAATGTCACAAAGGTAT
GAATCAAAATTGTCGCAACAAAGAATTAAATTTTCGTTTCGAAGAAGTTG
TTTTACCCCGATATGGTGGATTATATGGATCAAACAACACAATATACACA
TTCACCAACACATGCCCCCTAGATACGTGGTTTGCGATTTTCCAGTTCGT
TGAACCCAGAATATCATCCCAGGTCAAATCTAAACGATTTCAAAGCCTTC
TAGAATTACTTTCACGCAACGATTTTGTAGGTGGCCGGATGCTTGTTGCT
AATGCAAAGGGAATACAGCCCAAAAAGCAAATCATCGATTTCTTCGGCTC
AGAACATGAACTAATCATCGACCTATTCttggatgaaaattttaaaagtg
taGTGGAAAGCCAATGTGATAGTAAAGAATGTACAAATAGTCATGCGTTA
CGCTCGTTGTCACAATGCCCTTCAAAATTGGAAGGTCAAACAATAGAACA
CTCATTAAAGGAGTGGTTCTTCGAAGAAAGTTACACCGTTTGTGGAGAGC
CAGTTGTAGATGAAAACATTACTAATAAATATGAATGCAACAACACAGAA
ACCGGGGAAGTAACGTATCATTGTTCTGGATACAGAAGAACTAACCAGCG
AGTAGTTTTGGAGCAGCCTATCCTTCTTCCCCTAATCCTTTGTGAAACAG
AAACGCTCTCAACGTCAGATTTTCCGACTTATCTGACTGTTGATGAAAAC
ATAAAATTTCGTCTGCAAGCTTTGACGCTAAACAAAAAAAGTCATTACTC
TGCAATAATCAACACCAAGCAAGGCTGGATTTACTATGATGGTAAAGAAA
TTCCATGCGTTAAGAAGATGCCAAGATTTGAGGTTCCAAAAGGCTTTATA
CCAAGTTATTGTCTTTATGTTGTTGATCAAAATGATTATAATGAAAACAA
GGACGTCGGTTTAGAAATCAAAGTACCTTTAGATACGTTGGATTTTGTCT
TCAATCAAGGAGAAGATATATTAGT
Run BLAST on NCBI

transcript from alignment at sc0000119:302371..315962+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010988 ID=TCONS_00010988|Name=TCONS_00010988|organism=Clytia hemisphaerica|type=transcript|length=13592bp|location=Sequence derived from alignment at sc0000119:302371..315962+ (Clytia hemisphaerica)
TAACAAAGATGACGTAATTGTAACACTCTTCCTTTGAAGCAATTCTTCAT
ATGTATAAATTTGTTCTCTGCCGCAGAGCTTTTCCGTTAAAGATAAACAT
CCCAAACGGGAAAAGTTATAAAACTCGAGGATTTGATTTTGAAGTAGCAA
GTAGCTTCTAGCATCACCAGCcaaggaaaggaaatttgaaaggaaaagtT
AACTAAAAGAATATGGATCTTCGTCCATTGATCTTGGCTGCCCTTGTTGC
AGTCGTTTTTTCACATAGGCATCCGAAGATTGGtgttttggaaagaaatg
tcCATTTGAAAGTTGgaaatcaagattttgagaATGAGGTGATTTCGGTT
GACTTGAAAATGATCTGCCGAATTATGTTCCTTGCCGAATCTTGGTCGCC
GCTAACTCGGGTCCAGACTCCGGGTCCAAGATTAGACAGAGTAGCCCAAC
TTTAggcaaaatcgaaagtggaaaatCGAAAAGTCCAAAAGTCCGAAAAG
AAAATCGAATCTATTCTGAATCGTATCGAATCGTAGACCTGCGAAGCTTA
GGTAGGAAGGAAAGACGAGCGATAACACGTGCGCGCGAGAACATGTCaat
gtatttatttttatcagCTTGTtggttttccaaaaaaagttcaaaatgaa
aTGACAACTGCAGAATAAATTCAAATGGTAAGCGTTAGTTTAATAGTATC
ACAAGATCATTTCTAAGCTTTACAAGTCACGAGGTATATATATACTCATG
TTTCTAAATATTTGTTTATGGTTATTACACATTTCCACTACTTGTCCTAC
CATCTCAACAATAAGTTTGCATACAAAGAATGCATAGAAAATAGAGTTTA
TTACTTATCACTGAACACTTAACAGGTCAGGCTACTGGTTCAAAATCtca
tttaattaatttttatgaATAAGCACGTGGTTTTCATGGTTTAGGGTAGG
TGAACATTCTTTACCTTTAGAGACTTAACACTCCACGTACAACAAGTATA
GGATATCTTCATAAAAAAGGCAAGTTTTTGaggtttttgtgacattttat
AGCATTGTTACTTAATTAGACATTATCTCTTTCTATCAATAAAATGGCGC
TTTGTATGACTTGGCTTACAATCCTGAATTCGGAAATCTGATTCCGAAGA
TGCATATTCCAGAATTTGCTCTCGGCAAGTATAAAGATAGAGGCCCCCAG
CGtggtcccaatcacgccatcacgccaaaaaaatctcTCATCACGCGTCA
CACACACCAGATCAACGATGGacgtaccgtgagattgggtaaatcaaaac
aagaatgctagagtagagctgcaagcagagctgcatagttcatttgtttt
aaaattttgctgcttagATTGGTCGTCGTTtgagagctatgcatgttagc
ctccactaatGCAAgctacccaatctcacggtaccttGTCACGCCATGTC
AAGCATTTTAGCATTTTCGGAGCATAATAATTACGCCATCACTCAAAAAA
ATACCCCCAatcatgccatcacgcaaaccgctgggagGCCTCTATAAAAG
TCAGCTGCTATGCTATATGGATTccatgttttaaaaaattttcttttaaa
tttattttgaaaactggTGCTATCATTTCAACCTCTACTCATCAGTTTAA
ATACTGGTGCCCGCAGAAGACTTTCACCGTTTAAAATCTTCTATGGTAGG
AAGTTGTGAATGGTTGAAACAAGCACAAGTTGATTGAAGATGCTAACAGC
TGATTGAAACGAGAATCTTCAACTATGAGATTGGAGTGAAAGTGTTGATG
CTTGCTAGCTTTTGTTGATTTACTTACTCCGTGATACTTCGTTGTTGATT
ATACGTACTTTATGGTACTGATCCAATTCGTTGAATCCGATGATTGATCA
TTACTGTTTCCTGAAGAATAATTAGGAAGCAGTGGTTCGTCTGGCAGTGT
ACTGAGGAATTGGTCAAGATGACTTTTGTTTGCTTTTGCTTGCTTTGCCT
ATCGAGGCTGGAGCTAATAAATTGTTGGTTTTTTTATCACCCAACCTTAG
ATTTTGGAGGTGAATCAgccagccagaaaaaaatttattaagaggattta
tgaaatttttgtccaaaCAGCTTTACAtcaaggtaattttgaatggaaaa
cAGAAGAGCACCAGCAGAGAACTCGCAATTCTTACTTCttatgaaatttt
tgtccaaaCAGCTTTACAttaaggtaattttgaatggaaaacAGAAGAGC
ACCAGCAGGGAACTCACAATTCTTACGCTTGAGACAGACAAGATATGagt
tcttctttaaaatggcaataaaatattttgagtcAGCAGGTTTCGGGTTA
GGGTTGGTcaggtgacggcaaaccaataATTTTTTAGGTCCAACCTGAGT
TAAGATTTTTTGATATAATATAGCTTATTTTAATCCCCACAATATAAACA
TTtcttaatttccaaaaaaaatatagcaaaatctTTTCCCTTAGATCAGC
TTAGATCCcctttaaacattttttatttttcaaaccatTCAAActtcaat
tcaaatttaaactgattcacaaaaaaataactgGAAAAGAAGGCTAAATA
AAACCAGACAAACAAAAGATATATATTGGTATTTTGAAAAGTTCATCATT
ATCAACATTATAATTTCACAATATTGAGCACTATTATTGAGCTTATAGTT
TGTTTCtttctcaaactttttttagttATATAAAAGGAAATCATGTTCTC
TACAAATCAATAAATGATGAATGGTGAAGATAAAGGCAAGTTTTCTGATT
GATCCCCTACTATGATGATTAGGATTACTTAAGCATAGTAAAAGTCCTAT
ATTGATTTTAATTGTCTTTTCTGGACCTACCTCAGGTCCTTTGAATTAAC
CCAGGTTAGTttgtttgtccgttcgtctgttaccagcttttcttgcAATT
GGTTCAttagtcttttctgattttttgcatttccATTGTACATTTATCTT
AAGGTAGGTCCAGTTTGCGTTCTGCTTGTTTACTTTTacttgattgtttt
tatttcgaACTCAACAAACACGATGGAAAAAATCTAGACGAAAAGATAGA
GATCAAACACATTCGGACACTATACACATATTATTTCTCAATTATGTTCA
GCATTACAGTATCTTCAGTGTGGGAACTACAAAATCTTTGTGgcacaaaa
cattcaaaataaaatgtttaatCTCATGTCTTCTCTTTTTATTGAAGCTT
TCCATAACTCCCTTCAGATCAAACTTCCTGAACTTCTAATTAACACTAAA
GTGAAAAATGTCAATTCTTGCTTTTAAAAAAATGGGAGAAAATGGCTGTA
GTTTTGATGTGAATTGTTAAAAGAAGGGGTTCTATGTTTATTAGAAAATG
TTACTtgtctgattttttttcttttaggctctttgtttttaaggctttac
ttATGAACCAGAATATGTTAAGTTTTTCGCAAATTGCACGTTTTTTTGCC
TGGgaactttttcattttatattttacctcTTACTTGCTTTGTTGTCTTG
TATGGTGTATGCTATACTACTACTTTTTATTTAGATGAATTCCGGTCAAA
GTTTGACGAATTTGTTAAGTCTTCTTCAAGAAGTGACAAAAGCAAAGCTC
TCCCAGATGACCAGTATGATGATATTGTGAAGGTACCttcttaagagaag
aaattttggcgaatctAGCGAAGTGGgaaaaaaattcaccaaaatttctt
cttgccaaatttatttttgagagtAAAAAGAACTAAAAGAGATCTTTACA
TTGAAAATACTTTTCTCTGGTCttgtcacaggaaaaaatctttattcttc
atttttagttgccaaaattaattctaaccaaatttgaatattttcgtcgt
tcgccaaaattctcgcctaatttaaattttttctcaagttGCCAAAATGA
TAAATTCTGTCACTAATATATGCCAATATTGGCGAATTGACCTGATCGCC
AAAATATCTtattgccaaaatttcttctttttaaagGTACTGAAAGATGG
ACATGGGGACAAAATACTTAAAAAGAAAATCAGGAGAAATGGTTACAAGC
TGATGAACTATCCGAAAATTGGACTGAAGGATGCCCTATTTATACCATTA
AAGGTAATTTCAcatacatgaaaaatatattatcgattttatcaaatttt
tacttttcatttctaataatacatgttttttaagaaaaagagaCTCAAAG
TGTCAAAAGGTTTAAAAATACTTAGgcaacatttcaactttttctcaTAA
TTGactattttaaaaaattttatcaataaaatttaaCGAAACATCTAAAA
CATATTTCAGGATGAAGTTTATGATTTCTAGAGCCAAAACACATGGTTCG
CACCCTCCTACTAGACCTAAAATTTGTTAGTTGTGTCGATTTTACATTGT
GTTTTatgcaatttgattggttattttgacaggttttacaCACACAGTCC
AGAGTTAACCGCTAACTCTATTTTTGgtctttcaatttctttgatttgct
ttgtacattagtaaaattttGATGCCTTAGAGCTCACCCAATTTGATCCT
TGTAATGATAAGTATGAGCAGGGGGGGGGTCACGCAGTTGGTATCAGACA
TCATGAcagttagtaccgtggtggtccATTTTTGGTTTTTGGATTTTGCA
GTTAGTACCTTTTGGGTACTAACTGCTGTAAGGGGCGGTGTACtacaaat
ttcaagtcaatcaaATGGTACTAACTGCTTCTGAGGGGTGGTGCACTATA
TATTCTAAGTCAACCAGATGGTActtttagggtactaactgTAGAAAAGG
CTGGTCTTAAGCTTTCTTTTCTATTTAGAAGCTTTATCTGTTTTACTCTT
CATACTTACCAAATCATTTTCCTAATTGTGCACCCAGGTGCACCACTACT
AAAGTATACTATTATGTTTCACCAGCAcagttctttgtttttatttttgt
cgcGCTGTAAGGCTCTATCTAAACTTAATTTATATTGTGGGGAATGAATT
AGAAAGCATTCGAATTGAAaataaaacgttcgaattttgtCATTGCAGTG
TTACATATCCTGAATCACTGGACGGCATTTCCTTTCAAAAGTGATAGTTT
TAAGGTGTATATGTGTTGTTTGAGAGGGTTGAAGGTGGTTGAAGGGGGGA
ATATAGTAATGTTCTTTTGTTAGACAGAAACAAAAGGACaaggtttttat
ttcaaacgcTTTTGACCTCATATATTGGGCTTTATAGATTTGATTTTTAG
ATCAAATAAGGATTTGATTTATAGATCAAATAAGAAAGAATTACCAAGTT
AGGGCTGCTTGGGGTACTAACAGGTTTCAAAATAGTGATATCCTTGAGTG
CAGGCTACTCAGGACCACTCAACAGGGGGTGGTGTCAACCTACCAATAGT
CAAACTCATTTAGTACTTTTGGGTACTAAGTGCAAATATGGGCTGTATCA
ACCTGCCAATAATCAATACACTTAGTATTTTTGATTAACTGCTAGGGGTG
GTGGgtggtttttcaaattttcaattttgcagtTAGTCATCATGATGTCT
GGTACTAACTGCGTGACCCCCCTGGTATGAGCACAATAAATAACTTGAAT
AAAGTTTTTACTGAAATCTTCCCCAcccaaaaatcattaaaaaaaaatta
tttttaacttttaggaAGGAAAGAGTAATGAAAGGAAGAAGATCAAAAAG
AAAGATGTGGTGGATGGTAATGAGCTAGATGCAAAAGAAATGAAAGGAGC
TAGGAATGAAGTCACTGAAGAGAGAGCAGAGACCATCAAATTAACTGATA
ATTCCCTGTTCTCAAATCACAGAAAGGTTTTTCGCATAAATGAGATGTTT
GATCTTGTCAAGGAATGCCATTCAAGTGAATCTGTTCATGCTGGTGAAAA
AAAAACCTATCAAAATGtaatttcttttccttgatttgTTCTGAACAGAG
AAGTGTTAATAATAAAAGAAGAAACCTTTGCGGTTTAAGGTTTCGGGTGT
CAAATTTCTNgtaatttctttttcttgatttgttcTAAACAGAGAAGTGT
TAATAATAAAAGAAGAAACCTTTGCGGTTTCGGGTGTCAAATTTCTGtga
ttattattttttgcgaaacaaaaaaaaatgttgaaaagtcAGTTCAGCAA
AAGATTctgcaaaatttttttcaccaaaaaagaTTCTTCCCTTAGGTGAT
TAAAGAAAACAGCACTATACTTAGTAGGGGTCGGACTTTACTTATTGGTA
TACTCTGATAAACGTGATGATGTCaacttgaaaactttttggCTTAACAG
ACAGTTATAGGCTGTTTTAGAGTATAGTATAGTTATATTTTCAACAGTAT
GAGAAAGtgaatgaacaaaaaaagtaaacaaaaatattacaaataagttt
tcaaataaatttactATGAGAATGTCTTCGATTAATTAAGTAAAAGCGTT
CAATTTCATTTGAAAGGGAAAAAATCCCTTTTCAGTTTTAAGTAAGTCTT
GTGATAAAGAGAAATGTTTTATTTCagtaaaatttattcaaacatACATT
TTGAATTGTAGGTTTGCCAATTTGCATGTAATGTTTCGATGGCTATTGTA
AAGTTCTTTATTGAAAACTGCGTTCCGTGTTCTTCAAAAAAGCCACAACT
ATCTGTTGCCAAGCTCACACCTATTGTATCAAGATTTTTCATGGACAGGA
TGCAGGTAAGTTTAATAAAAAGCATTCTAATGGGTTCctttttcagtgaa
aaataaGCCTGAAAACAATGACAGAAACTTCAcaacaataatttttcaat
aaaacatcGTGTGATCTATAAAGATCCAATACAAATACACTCGTTAACAT
TAACTTTGTATAAAAATTGTTGTTAAACCCCATGTACATCCTTTTAACTA
AATATTTGCCTACTGCATGGTCGTCACTATTTCTTGTATTGCTACTttga
aaagattgaattttgcaattttgtgaATTTATGCCATTTTCAGCGGTATC
AAAACTTGCAAAAACGTGTAAGATTGCGAATAAATCAAccccaaaatttt
aaaattgcttTTTCGGCCGAGAAAACAGTCATTTTATGATGCTGTCAAAT
TAAatctcgcaaaatttaatccttaGTATTTTAATCCttagtattttatt
tttgtattaattcagataaatatttttagattgACCTTATCGACATGACT
CATGACCCAGACGAGAAATTTCGATACATTGGTCATATTGTTGACCACTT
CTCCAAATATAGGGTTATTTTTGCTCTTAAGTCAAAACAGCCGGCAGAGG
TAGGTCTTCATGTGAAAGCCCGTTATCTGGCATATTTTGGTCTGCCAAAA
ATTGTCCAATCAGATAATGGGGCTGAATTTGTGGACCTAATAATCAGAGC
TATTATTGTTCTCTGGCCTGGAAACGCTCGAATCATCAACGGTTCACCAA
GGCATTCTCAATCACAAGGTGAGACTTTTTAACAAAATCCTGTACTTAAT
GTTCAAAAGATGGACTTGATTTTATTGGTTAGAGCCCCCTAACCTCACTC
CATGCTTACTAATTTTATCAACAAATACCAAAACTAAGCAGTTTCACAAT
TCTCCTTAATATAATCTTGACCTCTAATTCTCACTTGGACTGTTTTAagc
ttttgtaaaatttttacttcGCTTTAACTGCTTAAAAAAGAATAAAGGGA
TAGTCAGGTTACAATATGAAGTTTTGttcatgaataaaaaaaaaaatttt
ttttggtttttgggctatttgatttttacaaaaaagtatGAAATAAAGTG
AAGGTTAACTCACTTCGGAGGCATCAGTACCAGACAGATATATCAACTAG
ATATTTAAGTTTGAAAGTGAATTTCAATTTAGCTGGTTAATTACTTAGAA
CCTTAGGCGAGCCTTTTATTCATTATGTGTCTATCCCTTTAGGGATCTAT
ATTTCTTCTTTAAATTTGATTCAATGAAAATGTTGGTAATGTTTGGAAAT
TTCACTGCAATTAAAATGACATCTAATGTGGAGTTTTTTTCTATCTGAAT
TAGGTTTGGTAGAGCAAGGTAACTGCGacattgaaaagaaaatcagtgCC
TTGAGAGCTGAACGAAAGTGCAAATCCTGGGTAAAACTGCTACCTGAAAT
CCAATGTAAGTTTCCTTTTACAACAAATATTTAACAGTATCAATTAATAT
Acacaacaagaaaacaaaaataatcttttttgagttcttgcaacaaagaa
aaagatgCCAACTCTTATTTCATGTTGATCAGAGTTTCATAATACGATGT
ATGATAGGCTTTTTTTACCGTAGTAGAATATTTCAACTGTTACTATGAAA
ACACAATGGcaaattttcattgaaactATAGCGAAATTATACTAACGTAC
TGGCGTAAAAAAGTTACTGCATTTCAAATAGGTTACTTTTATGGTTAAAT
GTACAccttatttataagaataaagtATCTAAGAACATAACGCTTTGATa
cgtcaaaaattaagaacatgctaaAACAATTGGAGGCTTCAGGAGTATAG
TCTATAgattatttttgaatatatGCACACTTTTGTGAGGAAAATCGCGT
TTGGAGCCAATTAAGTCTCCTATGAGCAAATTTCAGATTTAAATTAAAAA
CACTTAATCAAGtacaaaaaaactaagaatattgAAGGACATCGAAGGCC
TCTTCTAATTAAATTTCAGTGTTATTatgaaaaaaagtgtatttatttaa
atattttttattttttttattgttaagaTGTTAAATTCGAACTGACTCGA
TTTGACTTTAGATGCTATGAATACAACAGTCGTTTCGAGTACAAAAAAAA
CGCCATATTCTATTGTGTTTGGACAACATCCTAATAGACTGGCAGCATTC
GGCGTGAAGTTTGACGAACCGGTCATAAACGAAGAAGAACTCCGTGACAT
TATTGTTCCGGTTGCCCAAGATACTTTGGCAGAGGCAGAGGCAAAGGCAG
AGCCAGAGACTGTCCAGGTAAAAGTTTTGCTCATTAAGTATATTTTAAGA
GACTTAAAAGGCCGCTTATGTAGGGCAGAAATATTTAGCAGTATAACCTA
TTTCGTCCATACTCTGCCTAAATAACGTTGTTAAATTAAACTGCGTATGA
CATCGACTTGCAAAATTGTACAGTATGACATGAATAGATCATTTTAAATG
ACACCAACTTGTAACGTTGTACGATTTGACACAAACAAATCTTTTCAAAT
GACATCGACTTGCAAAATTGTACAGTATGACATGAATAGATCATTTTAAA
TGACACCAACTTGTAACGTTGTACGATTTGACACAAACAAATCTTTTCAA
ATGACATCGACTTGCAAAATTGTACAGTATGACATGAATAGATCATTTTA
AATGACACCAACTTGTAACGTTGTACGATTTGACACAACAAATAATTTCA
AATGACATCGACTTGCAAAATTGTACAGTATGACATGAATAGATCATTTT
AAATGACACCAACTTGTAACGTTGTACGATTTGACACAAACAAATAATTT
CAAATGATATCGACTTGAAAAATTGTACAGTATGACACGAATAGATCATT
TTAAATGACACCAACTTGTAACGTTTACGATTTGACACAGACAAATCTTT
TCAAGTGACATCGACTTGCAAGCAAGGTTGTACGATATGATATTGAACAC
ACACTTAGAAATTTGCGGGTTAAATAAATCAAATGAATAAGTATTGCAAT
GAATAAATGGCATTTGATAGTTATAAGTAGTCTCTATCCACTCGATAGGA
AAATGATGCAGCCTCTAGCTTCGAACCAACGTGTTCTAAACGGAAAGCCA
TCAGAGATGAAGTCAACTCCAACTTGGAACTTAGCAGAAACAAGATGCAG
GAAAAATACCAAAGAAAGAAGGGAAAAAGGGTTGCTAGTTTCAGTGTTGG
AGAACATGTTGGTTTGTTGATTccggaaaaaataagaaaaaaagctgACA
TCAAAAGATTACCCTGTATTGTCCTCCAAAAGTCGAATAACCGTCACTGT
GAAAGCTTTTCTTTGATGAGCGAGTATGGGATCTTGAATGGAAAATTCAC
AGCATCAGAATTAGAGAAGTACCCAGGTCAGGTTAATGGTTTGGATGATG
TCAAATTGTCTTTAAATGCAGCATCACTAAAATTGCTTGGAAAAGAGGCA
ATTTCCTGCAAATGTTCAACATTTTGTTCAAACAACTTGTGCGTTTGTTT
TAAAAATAGCGTACCTTGCTCGTCAAAATGTCACAAAGGTATGAATCAAA
ATTGTCGCAACAAAGAATTAAATTTTCGTTTCGAAGAAGTTGTTTTACCC
CGATATGGTGGATTATATGGATCAAACAACACAATATACACATTCACCAA
CACATGCCCCCTAGATACGTGGTTTGCGATTTTCCAGTTCGTTGAACCCA
GAATATCATCCCAGGTCAAATCTAAACGATTTCAAAGCCTTCTAGAATTA
CTTTCACGCAACGATTTTGTAGGTGGCCGGATGCTTGTTGCTAATGCAAA
GGGAATACAGCCCAAAAAGCAAATCATCGATTTCTTCGGCTCAGAACATG
AACTAATCATCGACCTATTCttggatgaaaattttaaaagtgtaGTGGAA
AGCCAATGTGATAGTAAAGAATGTACAAATAGTCATGCGTTACGCTCGTT
GTCACAATGCCCTTCAAAATTGGAAGGTCAAACAATAGAACACTCATTAA
AGGAGTGGTTCTTCGAAGAAAGTTACACCGTTTGTGGAGAGCCAGTTGTA
GATGAAAACATTACTAATAAATATGAATGCAACAACACAGAAACCGGGTA
AACATAATCAGTAATTCTTAATTTATTGCCATTTcttcttaaccctttaa
gtgccgtgGATTCATTCAAAGACTCTTTCTGTTTGCCGcggttttccaaa
aaaaaattttttgtttgccgATGACTTAAAAACTGGTCATTACGAAATGT
AGTCAAGTATGACAATGACTTAAAAAATGGtcatttttaatatattttta
ttttctggcaaatggaaaaagtcttgaaaaaacTCATCGGCAtacttttt
acatttttggaTGACCAGTTATTAAgtcattggcacttaaaggatTAAAG
ACATTTTATCTGTCCAAagctttagcttgaaaaggtGAATTAGTAATGTA
TAGTAACTTACTATCCGAAATCTTAGGGTTTTTCGTCTCTTGTTTAATAA
ATGCCTCTTTTTTTAGGGAAGTAACGTATCATTGTTCTGGATACAGAAGA
ACTAACCAGCGAGTAGTTTTGGAGCAGCCTATCCTTCTTCCCCTAATCCT
TTGTGAAACAGAAACGCTCTCAACGTCAGATTTTCCGACTTATCTGACTG
TTGATGAAAACATAAAGTATGTATATAGCTTTAAAAGGCCTTTTCGtatg
aaatttaaaataaatcGTCCTTGCTTGTATTAAAGTATCAAACTTATTGA
AACAGATTAGACGCATTAAAACACGAGTGTTATAGATTGATTATTCGTCT
TTTATTTGAAGAACTTCAGTTACATTTTTACATTATAGATTTCGTCTGCA
AGCTTTGACGCTAAACAAAAAAAGTCATTACTCTGCAATAATCAACACCA
AGCAAGGCTGGATTTACTATGATGGTAAAGAAATTCCATGCGTTAAGAAG
ATGCCAAGATTTGAGGTTCCAAAAGGCTTTATACCAAGTTATTGTCTTTA
TGGTTAGTCGACCTTTTACAATAGATCTAACAATCCTTATTAGTCACATT
agctttcaaagcatccagacatAGCCAGACATATTCCTTTGCTGTGTCGT
ATATGCTTATAATGCTTATACGTATATGCGAACATGTCGagtttaagatt
ttaaaagcaATGTATTCTCATACTTTACTGTGTGTTGGATTTGGAATaag
atagaaaaaaaacaaattgatgAATTGATATCAGGCTAGCATatattgtt
atgttatgcttaggaaatctgcaaatctgagcgcCTTCATATGCTTAAAA
GTGTTATGCTATTAAATTCTACACATGAATTTTGTCTGGCTTTTTTACAG
TTGTTGATCAAAATGATTATAATGAAAACAAGGACGTCGGTTTAGAAATC
AAAGGTGAGTTTTGGTTACAGTTTCACCCTTATAGTCTGGcagaaataca
cgtttttttttttttaagaaactagttttaccaagcagcctcaatgtttc
ttaagaaatcggccttttgagccttaaatgtttcttacatgtttctaaac
tttatcaagcttaaaggacgcatgtcgataatacaatagtctaattgact
aatctacggtactttcctatcttctatattgattttctgactttctcaag
agTTTCTAACTGTTAGGTATGTATATTTCTGCaaccttgattggaaggtt
cttaaaaaaacgaattaaaaaaatgctattttctaattctcagcctcagc
atgtttcttagatgtttcttagttttcaggcattctgagcctcatgtttc
ttaaaagtgtgtttcttaaaaaaaaaaaaacgtgtaaaagttGACCTGGA
AATAAATTccgcgtaaactttcttggtatcGCTGGAAGGGGAATTTTACG
AGGTttaacatactcagagcctcacgtTGAGACCCTTGGGggaaaaaatt
ggtgaaataaaACACTTAGGACCCATTTTCGATATAAAATGCCTTGAAAG
ATGCTATCCTTGCCATGGTAGGTGTCTTTCAAAACACTCAAATATGTATG
cccctgtctcaaaaatctgggggggggggggttNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggggttccc
aACAATCACATCTCTTGAAACCACAAGCAATTAAACAGTGTCATCCATGA
TATGAAATGGGTCAAGTGCAAGGCGAAAGTGCTTAGGTGAAAGCACATGG
GGATAGcgctgactttcaaagactttcaaTAGCTTTGATAGGTTTTTAGT
GTAGCTGGTGACCAGTACACTGCTAAAAAACGTATCCGTTTTGGGTTGGA
GAAGTACACTTCAGTCTTGACTTTACCAAAGATTTTCCCCAAGGGCCTCA
TCATGAGGCTCTAAGTAtgataatctacataaaatttcgcttccaacggt
accaagaaagtttacgcggAATTTTTTTCTACGTTCACCCCTGTTTTATT
GTATTTCTGCCAGACTATTAGTGCTTTATTCTATTTTTGATTTAACTCTT
TTTCCTTAAATTGAAATTAGTAATATTTGAAACAACCAGTCTGAAAGACC
ACAATTTCCCTACCTAgatcaatgaatgaaaattgaattcaattCTATTC
TAGCTTAAATTGTTCtaattataaaaacaatacCTTTCAGTACCTTTAGA
TACGTTGGATTTTGTCTTCAATCAAGGAGAAGATATATTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006165XLOC_006165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010988-exon-sc0000119-1491911889:302371..302708TCONS_00010988-exon-sc0000119-1491911889:302371..302708Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:302371..302708TCONS_00010988-exon-sc0000119-1510915933:302371..302708Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:302371..302708TCONS_00010988-exon-sc0000119-1575043694:302371..302708Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:302988..303047TCONS_00010988-exon-sc0000119-1491911889:302988..303047Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:302988..303047TCONS_00010988-exon-sc0000119-1510915933:302988..303047Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:302988..303047TCONS_00010988-exon-sc0000119-1575043694:302988..303047Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:305955..306052TCONS_00010988-exon-sc0000119-1491911889:305955..306052Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:305955..306052TCONS_00010988-exon-sc0000119-1510915933:305955..306052Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:305955..306052TCONS_00010988-exon-sc0000119-1575043694:305955..306052Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:306407..306523TCONS_00010988-exon-sc0000119-1491911889:306407..306523Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:306407..306523TCONS_00010988-exon-sc0000119-1510915933:306407..306523Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:306407..306523TCONS_00010988-exon-sc0000119-1575043694:306407..306523Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:308085..308336TCONS_00010988-exon-sc0000119-1491911889:308085..308336Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:308085..308336TCONS_00010988-exon-sc0000119-1510915933:308085..308336Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:308085..308336TCONS_00010988-exon-sc0000119-1575043694:308085..308336Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:308982..309125TCONS_00010988-exon-sc0000119-1491911889:308982..309125Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:308982..309125TCONS_00010988-exon-sc0000119-1510915933:308982..309125Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:308982..309125TCONS_00010988-exon-sc0000119-1575043694:308982..309125Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:309600..309888TCONS_00010988-exon-sc0000119-1491911889:309600..309888Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:309600..309888TCONS_00010988-exon-sc0000119-1510915933:309600..309888Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:309600..309888TCONS_00010988-exon-sc0000119-1575043694:309600..309888Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:310474..310575TCONS_00010988-exon-sc0000119-1491911889:310474..310575Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:310474..310575TCONS_00010988-exon-sc0000119-1510915933:310474..310575Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:310474..310575TCONS_00010988-exon-sc0000119-1575043694:310474..310575Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:311232..311437TCONS_00010988-exon-sc0000119-1491911889:311232..311437Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:311232..311437TCONS_00010988-exon-sc0000119-1510915933:311232..311437Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:311232..311437TCONS_00010988-exon-sc0000119-1575043694:311232..311437Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:312219..313267TCONS_00010988-exon-sc0000119-1491911889:312219..313267Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:312219..313267TCONS_00010988-exon-sc0000119-1510915933:312219..313267Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:312219..313267TCONS_00010988-exon-sc0000119-1575043694:312219..313267Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:313687..313836TCONS_00010988-exon-sc0000119-1491911889:313687..313836Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:313687..313836TCONS_00010988-exon-sc0000119-1510915933:313687..313836Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:313687..313836TCONS_00010988-exon-sc0000119-1575043694:313687..313836Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:314009..314172TCONS_00010988-exon-sc0000119-1491911889:314009..314172Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:314009..314172TCONS_00010988-exon-sc0000119-1510915933:314009..314172Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:314009..314172TCONS_00010988-exon-sc0000119-1575043694:314009..314172Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:314521..314574TCONS_00010988-exon-sc0000119-1491911889:314521..314574Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:314521..314574TCONS_00010988-exon-sc0000119-1510915933:314521..314574Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:314521..314574TCONS_00010988-exon-sc0000119-1575043694:314521..314574Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1491911889:315911..315962TCONS_00010988-exon-sc0000119-1491911889:315911..315962Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1510915933:315911..315962TCONS_00010988-exon-sc0000119-1510915933:315911..315962Clytia hemisphaericaexon
TCONS_00010988-exon-sc0000119-1575043694:315911..315962TCONS_00010988-exon-sc0000119-1575043694:315911..315962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:302371..315962 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0271084	0.0324315	0	0.540168	0.257192	1.92232	1.48815	2.19252	3.07455	3.54803	2.25983	2.96214	3.85886	0	0	0	0	0.133058	0.0456017	0	0	0.0322473	0	8.33089	8.80128	0	0	0	0.0311856
Blast
[Close]
BLAST of TCONS_00010988 vs. Swiss-Prot (Human)
Match: SCND3 (SCAN domain-containing protein 3 OS=Homo sapiens GN=ZBED9 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.677e-23
Identity = 68/231 (29.44%), Postives = 108/231 (46.75%), Query Frame = 2 
Query:  770 RKVFRINEMFDLVKECHSSESVHAGEKKTYQNVCQFACNVSMAIVKFFIENCVPCSSKKPQLSVAKLTPIVSRFFMDRMQIDLIDMTHDPDEKFRYIGHIVDHFSKYRVIFALKSKQPAEVGLHVKARYLAYFGLPKIVQSDNGAEFVDLIIRAIIVLWPGNARIINGSPRHSQSQGLVEQGNCDIEKKISALRAERKCKSWVKLLPEIQYAMNTTVVSSTKKTPYSIVFG 1462
            R      ++FD++   H S   H G  +  + +     N++  ++  ++  C PC  K  +L    LT    +    R Q+DLIDM  +PD ++R+I H  D  +K   + +LKSK+P EV  H         G P ++QSDNG EF   ++  +  +WP   +I++G  +  QSQ   EQ   DI K+I +         W + L  IQ + N     S ++TP    F 
Sbjct:  299 RYYLHSEDLFDILHNTHLSIG-HGGRTRMEKELQAKYKNITKEVIMLYLTLCKPCQQKNSKLKKV-LTSKSIKEVSSRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVA-HALLDIFTIIGAPSVLQSDNGREFSSQVVSELSNIWP-ELKIVHGKSQTCQSQSSAEQTE-DIRKRIFSWMQTNNSSHWTEFLWFIQMSQNQPYHRSMQQTPCESAFS 524
The following BLAST results are available for this feature:
BLAST of TCONS_00010988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCND32.677e-2329.44SCAN domain-containing protein 3 OS=Homo sapiens G... [more]
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