|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010987 ID=TCONS_00010987|Name=TCONS_00010987|organism=Clytia hemisphaerica|type=transcript|length=2023bp
TAACAAAGATGACGTAATTGTAACACTCTTCCTTTGAAGCAATTCTTCAT
ATGTATAAATTTGTTCTCTGCCGCAGAGCTTTTCCGTTAAAGATAAACAT
CCCAAACGGGAAAAGTTATAAAACTCGAGGATTTGATTTTGAAGTAGCAA
GTAGCTTCTAGCATCACCAGCcaaggaaaggaaatttgaaaggaaaagtT
AACTAAAAGAATATGGATCTTCGTCCATTGATCTTGGCTGCCCTTGTTGC
AGTCGTTTTTTCACATAGGCATCCGAAGATTGGtgttttggaaagaaatg
tcCATTTGAAAGTTGgaaatcaagattttgagaATGAGGTGATTTCGGTT
GACTTGAAAATGATCTGCCGAATTATGTTCCTTGCCGAATCTTGGTCGCC
GCTAACTCGGGTCCAGACTCCGGGTCCAAGATTAGACAGAGTAGCCCAAC
TTTAggcaaaatcgaaagtggaaaatCGAAAAGTCCAAAAGTCCGAAAAG
AAAATCGAATCTATTCTGAATCGTATCGAATCGTAGACCTGCGAAGCTTA
GGTAGGAAGGAAAGACGAGCGATAACACGTGCGCGCGAGAACATGTCaat
gtatttatttttatcagCTTGTtggttttccaaaaaaagttcaaaatgaa
aTGACAACTGCAGAATAAATTCAAATGAGACTTAACACTCCACGTACAAC
AAGTATAGGATATCTTCATAAAAAAGGCAAGTTTTTGaggtttttgtgac
attttatAGCATTGTTACTTAATTAGACATTATCTCTTTCTATCAATAAA
ATGGCGCTTTGTATGACTTGGCTTACAATCCTGAATTCGGAAATCTGATT
CCGAAGATGCATATTCCAGAATTTGCTCTCGGCAAGTATAAAGATAGAGG
CCCCCAGCGtggtcccaatcacgccatcacgccaaaaaaatctcTCATCA
CGCGTCACACACACCAGATCAACGATGGacgtaccgtgagattgggtaaa
tcaaaacaagaatgctagagtagagctgcaagcagagctgcatagttcat
ttgttttaaaattttgctgcttagATTGGTCGTCGTTtgagagctatgca
tgttagcctccactaatGCAAgctacccaatctcacggtaccttGTCACG
CCATGTCAAGCATTTTAGCATTTTCGGAGCATAATAATTACGCCATCACT
CAAAAAAATACCCCCAatcatgccatcacgcaaaccgctgggagGCCTCT
ATAAAAGTCAGCTGCTATGCTATATGGATTccatgttttaaaaaattttc
ttttaaatttattttgaaaactggTGCTATCATTTCAACCTCTACTCATC
AGTTTAAATACTGGTGCCCGCAGAAGACTTTCACCGTTTAAAATCTTCTA
TGGTAGGAAGTTGTGAATGGTTGAAACAAGCACAAGTTGATTGAAGATGC
TAACAGCTGATTGAAACGAGAATCTTCAACTATGAGATTGGAGTGAAAGT
GTTGATGCTTGCTAGCTTTTGTTGATTTACTTACTCCGTGATACTTCGTT
GTTGATTATACGTACTTTATGGTACTGATCCAATTCGTTGAATCCGATGA
TTGATCATTACTGTTTCCTGAAGAATAATTAGGAAGCAGTGGTTCGTCTG
GCAGTGTACTGAGGAATTGGTCAAGATGACTTTTGTTTGCTTTTGCTTGC
TTTGCCTATCGAGGCTGGAGCTAATAAATTGTTGGTTTTTTTATCACCCA
ACCTTAGATTTTGGAGGTGAATCAgccagccagaaaaaaatttattaaga
ggatttatgaaatttttgtccaaaCAGCTTTACAtcaaggtaattttgaa
tggaaaacAGAAGAGCACCAGCAGAGAACTCGCAATTCTTACTTCttatg
aaatttttgtccaaaCAGCTTTACAttaaggtaattttgaatggaaaacA
GAAGAGCACCAGCAGGGAACTCACAATTCTTACGCTTGAGACAGACAAGA
TATGagttcttctttaaaatggc Run BLAST on NCBI transcript from alignment at sc0000119:302371..304686+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010987 ID=TCONS_00010987|Name=TCONS_00010987|organism=Clytia hemisphaerica|type=transcript|length=2316bp|location=Sequence derived from alignment at sc0000119:302371..304686+ (Clytia hemisphaerica)
TAACAAAGATGACGTAATTGTAACACTCTTCCTTTGAAGCAATTCTTCAT
ATGTATAAATTTGTTCTCTGCCGCAGAGCTTTTCCGTTAAAGATAAACAT
CCCAAACGGGAAAAGTTATAAAACTCGAGGATTTGATTTTGAAGTAGCAA
GTAGCTTCTAGCATCACCAGCcaaggaaaggaaatttgaaaggaaaagtT
AACTAAAAGAATATGGATCTTCGTCCATTGATCTTGGCTGCCCTTGTTGC
AGTCGTTTTTTCACATAGGCATCCGAAGATTGGtgttttggaaagaaatg
tcCATTTGAAAGTTGgaaatcaagattttgagaATGAGGTGATTTCGGTT
GACTTGAAAATGATCTGCCGAATTATGTTCCTTGCCGAATCTTGGTCGCC
GCTAACTCGGGTCCAGACTCCGGGTCCAAGATTAGACAGAGTAGCCCAAC
TTTAggcaaaatcgaaagtggaaaatCGAAAAGTCCAAAAGTCCGAAAAG
AAAATCGAATCTATTCTGAATCGTATCGAATCGTAGACCTGCGAAGCTTA
GGTAGGAAGGAAAGACGAGCGATAACACGTGCGCGCGAGAACATGTCaat
gtatttatttttatcagCTTGTtggttttccaaaaaaagttcaaaatgaa
aTGACAACTGCAGAATAAATTCAAATGGTAAGCGTTAGTTTAATAGTATC
ACAAGATCATTTCTAAGCTTTACAAGTCACGAGGTATATATATACTCATG
TTTCTAAATATTTGTTTATGGTTATTACACATTTCCACTACTTGTCCTAC
CATCTCAACAATAAGTTTGCATACAAAGAATGCATAGAAAATAGAGTTTA
TTACTTATCACTGAACACTTAACAGGTCAGGCTACTGGTTCAAAATCtca
tttaattaatttttatgaATAAGCACGTGGTTTTCATGGTTTAGGGTAGG
TGAACATTCTTTACCTTTAGAGACTTAACACTCCACGTACAACAAGTATA
GGATATCTTCATAAAAAAGGCAAGTTTTTGaggtttttgtgacattttat
AGCATTGTTACTTAATTAGACATTATCTCTTTCTATCAATAAAATGGCGC
TTTGTATGACTTGGCTTACAATCCTGAATTCGGAAATCTGATTCCGAAGA
TGCATATTCCAGAATTTGCTCTCGGCAAGTATAAAGATAGAGGCCCCCAG
CGtggtcccaatcacgccatcacgccaaaaaaatctcTCATCACGCGTCA
CACACACCAGATCAACGATGGacgtaccgtgagattgggtaaatcaaaac
aagaatgctagagtagagctgcaagcagagctgcatagttcatttgtttt
aaaattttgctgcttagATTGGTCGTCGTTtgagagctatgcatgttagc
ctccactaatGCAAgctacccaatctcacggtaccttGTCACGCCATGTC
AAGCATTTTAGCATTTTCGGAGCATAATAATTACGCCATCACTCAAAAAA
ATACCCCCAatcatgccatcacgcaaaccgctgggagGCCTCTATAAAAG
TCAGCTGCTATGCTATATGGATTccatgttttaaaaaattttcttttaaa
tttattttgaaaactggTGCTATCATTTCAACCTCTACTCATCAGTTTAA
ATACTGGTGCCCGCAGAAGACTTTCACCGTTTAAAATCTTCTATGGTAGG
AAGTTGTGAATGGTTGAAACAAGCACAAGTTGATTGAAGATGCTAACAGC
TGATTGAAACGAGAATCTTCAACTATGAGATTGGAGTGAAAGTGTTGATG
CTTGCTAGCTTTTGTTGATTTACTTACTCCGTGATACTTCGTTGTTGATT
ATACGTACTTTATGGTACTGATCCAATTCGTTGAATCCGATGATTGATCA
TTACTGTTTCCTGAAGAATAATTAGGAAGCAGTGGTTCGTCTGGCAGTGT
ACTGAGGAATTGGTCAAGATGACTTTTGTTTGCTTTTGCTTGCTTTGCCT
ATCGAGGCTGGAGCTAATAAATTGTTGGTTTTTTTATCACCCAACCTTAG
ATTTTGGAGGTGAATCAgccagccagaaaaaaatttattaagaggattta
tgaaatttttgtccaaaCAGCTTTACAtcaaggtaattttgaatggaaaa
cAGAAGAGCACCAGCAGAGAACTCGCAATTCTTACTTCttatgaaatttt
tgtccaaaCAGCTTTACAttaaggtaattttgaatggaaaacAGAAGAGC
ACCAGCAGGGAACTCACAATTCTTACGCTTGAGACAGACAAGATATGagt
tcttctttaaaatggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010987-exon-sc0000119-1491911889:302371..303047 | TCONS_00010987-exon-sc0000119-1491911889:302371..303047 | Clytia hemisphaerica | exon |
| TCONS_00010987-exon-sc0000119-1510915933:302371..303047 | TCONS_00010987-exon-sc0000119-1510915933:302371..303047 | Clytia hemisphaerica | exon |
| TCONS_00010987-exon-sc0000119-1575043694:302371..303047 | TCONS_00010987-exon-sc0000119-1575043694:302371..303047 | Clytia hemisphaerica | exon |
| TCONS_00010987-exon-sc0000119-1491911889:303341..304686 | TCONS_00010987-exon-sc0000119-1491911889:303341..304686 | Clytia hemisphaerica | exon |
| TCONS_00010987-exon-sc0000119-1510915933:303341..304686 | TCONS_00010987-exon-sc0000119-1510915933:303341..304686 | Clytia hemisphaerica | exon |
| TCONS_00010987-exon-sc0000119-1575043694:303341..304686 | TCONS_00010987-exon-sc0000119-1575043694:303341..304686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:302371..304686 + |
Blast
The following BLAST results are available for this feature:
|
