TCONS_00010983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010983
Unique NameTCONS_00010983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010983 ID=TCONS_00010983|Name=TCONS_00010983|organism=Clytia hemisphaerica|type=transcript|length=809bp
CAAGACATCAAAAAACAACTCGTTGCACACAGCAGACCGAACAGGCATTA
TCAAGTTGAAAAAGTTCTTGAACTTTCAAGTATTTCTACATCAACAAGAG
AGACGATAGAAAAATGGCTTCTTTGAAAATCGTTTGTATCATGTCATCTG
TTCGTGATGGACGAATGGCTGAGCGAATGAGAAATCTgattcaaaaacaa
ttcaacGAAGTCTTGACACCCAAAGGACACACCATTCATTTTGTCGatcC
TGAGGAATACGATCTACCGGTTTTAAAAACACCTCTTCACTTCTACCCTG
ATCAATCGAAAGCACCAGAAAAATTACGACAATTGAACGACATTGTCATT
TCTGCTGATGCATACATTATTTTGACCGCTGAATACAATCGAAGCATGCC
ACCTGCTTTGACCAACTTGATCAACCACTTGCCACCACCGAGCTTCGAAT
TCAAAGTTAGCGGTATGGTTGGTTATTCGCAAGGAAATCTTGGAGGAGTA
ATGGCCATGACAGCTGCACGACCATTCTTGTCTGAAATGGGATGTCTACC
AGTCAAACATTTTGTTGTTATCCCCTATGTTCAAAACGAAGTGAAAGAAG
ATGGGACAACAGCAAACACGCACATTCACGAAAGTATCAAGAAATTACTC
AATCAAGTCGAATGGTGGGCCCAAGCTGCCAAAACCCAACGAGCTACTGG
AACACCCGAATTAACTTTCAAAATGTATCGCTAATTTCATACTACTTAAT
CATTTGTAAATATTagaataaaatgaatttgaagacGAGAAGATATCTTA
AAGTTACAA
Run BLAST on NCBI

transcript from alignment at sc0000119:288647..290591+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010983 ID=TCONS_00010983|Name=TCONS_00010983|organism=Clytia hemisphaerica|type=transcript|length=1945bp|location=Sequence derived from alignment at sc0000119:288647..290591+ (Clytia hemisphaerica)
CAAGACATCAAAAAACAACTCGTTGCACACAGCAGACCGAACAGGCATTA
TCAAGTTGAAAAAGTTCTTGAACTTTCAAGTATTTCTACATCAACAAGAG
AGACGATAGAAAAATGGCTTCTTTGAAAATCGTTTGTATCATGTCATCTG
TTCGTGATGGACGAATGGCTGAGCGAATGAGAAATCTgattcaaaaacaa
ttcaacGAAGTCTTGACACCCAAAGGACACACCATTCATTTTGTCGGTAA
GTGTGTGCTTCATTTACTAGTTTTTAGATCTAATTTCCTAACTTGAGCCA
TTTAGTACGAATATCTCCTCTAAGTTAAGACAGAGACAGAGACACAAAAA
ATTGGATTTAGAGTTTAGATTCATCATTGTTAATTTGTCACAAGAATTGT
CAACTACCTTTAGCGATATAAGGTTATCCTGCTCTCAACAGCTAGCTGTC
TCTAACTAGATGTATCTTATGATTCCtgcaaaatttagattttaaaagga
gttttttttttctttagatcCTGAGGAATACGATCTACCGGTTTTAAAAA
CACCTCTTCACTTCTACCCTGATCAATCGAAAGCACCAGAAAAATTACGA
CAATTGAACGACATTGTCATTTCTGCTGATGCATACATTATTTTGACCGC
TGAATACAATCGAAGCATGCCACCTGCTTTGACCAACTTGATCAACCACT
TGCCACCACCGAGGTAAACCGTTTTGGATTTGTCTGCCTATACTCCAAAA
CAACAGCGAGGCCTTCAAAATTTTGGGATACAAATAAGTTTAATACCTCA
GGATTCTAAGCAATGCCAAAAATATTGTAGACACAAATGATTGGGGAAAT
TTTTTACTACATGTTGAAAGTTAAAACAACAGTTTGTCTTCATACAACGC
AAGAATGGTATTATTGACcaattatgaaaaagaaaaatctcacCTAAACC
TATGAATCTGATGTACAGTGGATTTTTTTCAAGACGTTATTTTTGCTTCG
AATCTAGGTCATTCCAACTCAACAAGTTGATTCAcggcccattcacgcat
tcgtGCGCAACCACCGGGAGCCTAGGAACGAATGATGACAAAATTTCTAA
TTAATTATCACTCTTTTCTATTTCAGCTTCGAATTCAAAGTTAGCGGTAT
GGTTGGTTATTCGCAAGGAAATCTTGGAGGAGTAATGGCCATGACAGCTG
CACGACCATTCTTGTCTGAAATGGGATGTCTACCAGTCAAACATTTTGTT
GTCATCCCCTATGTAAATCGAANTCCATTCTTGTCTGAAATGGGATGTCT
ACCAGTTAAACATTTTGTTGTTATCCCCTATGTAAGttgaaattaaactt
ttaacGTCTTTAAAACCATCCATTCTTGCCTTTGTGAACTATAAATGACT
AAAACCACCTAAGTGAATAGGGGCTTAAGCATACTTGAATTTAAGCAATT
TTTATCCTAATACAAGAGTATGGCAAAAAGGGAGGAAACTTTGTAGTAGA
TAGTTTTTAAATTTACGCGAGAGATTtggtttttttaataagaagttttc
aattttctgtCAAAGTTTTAACCATTTTGCATTACAAGGACTTGAGATTC
AAATTTCTATGGAAAAAATGTTAGCCTCATCTTGACCAACCTTGTTGATT
TTTGTCATTCAGAACGACTTTTTTGATATTCTCTAAACAAATATTCTCTT
TTCTTGGCCTTAAGGTTCAAAACGAAGTGAAAGAAGATGGGACAACAGCA
AACACGCACATTCACGAAAGTATCAAGAAATTACTCAATCAAGTCGAATG
GTGGGCCCAAGCTGCCAAAACCCAACGAGCTACTGGAACACCCGAATTAA
CTTTCAAAATGTATCGCTAATTTCATACTACTTAATCATTTGTAAATATT
agaataaaatgaatttgaagacGAGAAGATATCTTAAAGTTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006164XLOC_006164Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010983-exon-sc0000119-1491911889:288647..288892TCONS_00010983-exon-sc0000119-1491911889:288647..288892Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1510915933:288647..288892TCONS_00010983-exon-sc0000119-1510915933:288647..288892Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1575043694:288647..288892TCONS_00010983-exon-sc0000119-1575043694:288647..288892Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1491911889:289164..289359TCONS_00010983-exon-sc0000119-1491911889:289164..289359Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1510915933:289164..289359TCONS_00010983-exon-sc0000119-1510915933:289164..289359Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1575043694:289164..289359TCONS_00010983-exon-sc0000119-1575043694:289164..289359Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1491911889:289773..289888TCONS_00010983-exon-sc0000119-1491911889:289773..289888Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1510915933:289773..289888TCONS_00010983-exon-sc0000119-1510915933:289773..289888Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1575043694:289773..289888TCONS_00010983-exon-sc0000119-1575043694:289773..289888Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1491911889:289958..289977TCONS_00010983-exon-sc0000119-1491911889:289958..289977Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1510915933:289958..289977TCONS_00010983-exon-sc0000119-1510915933:289958..289977Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1575043694:289958..289977TCONS_00010983-exon-sc0000119-1575043694:289958..289977Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1491911889:290361..290591TCONS_00010983-exon-sc0000119-1491911889:290361..290591Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1510915933:290361..290591TCONS_00010983-exon-sc0000119-1510915933:290361..290591Clytia hemisphaericaexon
TCONS_00010983-exon-sc0000119-1575043694:290361..290591TCONS_00010983-exon-sc0000119-1575043694:290361..290591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119supercontigsc0000119:288647..290591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
627.55	626.765	759.522	799.399	2.24357	2.66483	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	187.576	172.163	0	0	14.2732	15.7312	105.058	104.291
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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