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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010962 ID=TCONS_00010962|Name=TCONS_00010962|organism=Clytia hemisphaerica|type=transcript|length=2556bpRun BLAST on NCBI protein sequence of TCONS_00010962-protein >TCONS_00010962-protein ID=TCONS_00010962-protein|Name=TCONS_00010962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp MENLKDHLGQSLEDLKHKKTEQKGFYIPRRYIMAVLLFSICMLMNCQRSCRun BLAST on NCBI transcript from alignment at sc0000119:207414..216817+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010962 ID=TCONS_00010962|Name=TCONS_00010962|organism=Clytia hemisphaerica|type=transcript|length=9404bp|location=Sequence derived from alignment at sc0000119:207414..216817+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000119:207414..216817+ >TCONS_00010962 ID=TCONS_00010962|Name=TCONS_00010962|organism=Clytia hemisphaerica|type=CDS|length=14970bp|location=Sequence derived from alignment at sc0000119:207414..216817+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010962 vs. Swiss-Prot (Human)
Match: VGLU1 (Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=2 SV=1) HSP 1 Score: 275.789 bits (704), Expect = 1.665e-81 Identity = 169/485 (34.85%), Postives = 271/485 (55.88%), Query Frame = 2
Query: 404 FYIPRRYIMAV---LLFSICMLMNCQRSCLSVAIVAMSSTTKFWDGDQWVDQEAEFDWDSEKKGMLLGAFFYGYFFTQIPTGYLCMKFGGKNVLLFSMASASVIHVLIPFIVRFSDSLFFASRVLQGLLLGFVLPGNHFMWGKWAPMKEKAXXXXXXXXXXXXXMLTAYPISGILSQYGFAGGWPSVFYVVGAGGFLWCFAWYILAAESPLEHKTISKQE-----------LALMDQLSQYSSEDDVIPWCSILKNKAVFAVIIANFTFDFSYYTLLITMPLFLRDVHNYAVATTGMLSALPWFCMTVMITLCGYVSDKL--RRHLNVGLIRKLFFNSGSILSGVLLVISGYIVSSSGTVAVMCLXXXXXXXXXXXXXXNAMDVSPKYGSTIIGISNSLASVTGFIGPGMVGVITKEGTNDEWIVIFYILATVSITGGILFAILGSGEAQPFVEEVGDDCDAEYERIEKGGEDERTSPPNDEVKN 1810
F +PRRYI+A+ L F I + C L VAIV+M + + G V Q+A+F WD E G++ G+FF+GY TQIP G++C KF V F++ + S +++LIP R R+LQGL+ G P H +W KWAP E++ L + + G +G + A P++G+L QY GW SVFYV G+ G W W +++ ESP H +IS++E LM+ L+++S+ PW + V+A+I+ANF +++Y LLI+ P + +V + ++ G++SALP MT+++ + G ++D L RR ++ +RKL G + LL++ GY S ++ + L+V F GFA SGF VN +D++P+Y S ++GISN + +++G + P +VG +TK T +EW +F I + V G I + + SGE QP+ E + E+ G D+ + E+++
Sbjct: 57 FGLPRRYIIAIMSGLGFCISFGIRCN---LGVAIVSMVNNSTTHRGGHVVVQKAQFSWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVLVQY---SGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGESAKLMNPLTKFST-----PWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPE----EMSEEKCGFVGHDQLAGSDDSEMED 526 The following BLAST results are available for this feature:
BLAST of TCONS_00010962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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