TCONS_00010958 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010958
Unique Name	TCONS_00010958
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1436

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000119:191781..199157+

transcript sequence

>TCONS_00010958 ID=TCONS_00010958|Name=TCONS_00010958|organism=Clytia hemisphaerica|type=transcript|length=1436bp
CTTAAACAATACATCTTTAATTAACTTTAATGTTTTAgataaagaaattt
aaaagatATCACATTGATATGATGGCAAGCTTGACCTGGAAGAAATCAAG
GAAAAATGTCTCTTCTTCTGCTGCCAAACTCtttcaaaatgaagatgaag
aagaaaatgaagaagaaattatAGAAGATTGGAGAGATATTGTTCCATCA
AAAAAGAGTAAAGTAATGTTGGAAGATGGTGTCCAGAAAAGTAAACGTCT
AGTCAATGATGCAACCCAACTTGCAGACGAAGAGAGGTATTGGGAAGCAT
TGCAAAAATTTGATGAGGCTTTATCATTCACACCTCTTAATGAAAAGATA
CACGAAATGAAAGCACAGaTTCTTCTAGAACTTGGAGAAATTTTCCCAGC
AGTACAAGCTGCTGAGCAAGTTGTCAAATTGAATCCAACATGGGCTGAAG
GTTTCCAAACATTGGGTAGAACACAGATTAGCATTGGAGAAATTGATATG
GCGCTGAAAAATTTTTGTCGAGCTTATCATCTGAATCCTACACTTGACGA
TCTATTCGAAGAAGACATCAAATGGGCAAGAGAACTTCTCAAACAGAaag
aagaaatgaagaaaactgAAGAATCAAAAGAAACTGAACGTAGTAAtggt
gaagaagaaaaatgcgCTAAATGTCACCGATGTTTCAAAGTCAATGAGAA
AGCCTTGTCCATGAATGGTAACGAAGAAAAGAGAACAGAAGATGAGATAC
CAAAAACATGAGACGCTTTCACACTTTTCGACAAAAAAGGCGACGATAAA
GTCGAGTTTAGTCAAATCATCGACGTCTTGCGATCACTCAAACTCAACCC
ACTCACGACAGATGTCGAAAAAGTCATCAAAGATTCCGGCTTAGAAGGCA
CCCGTGTCGACTTCGCTACTTTCGCTAGCATTTACGAGCAATTCAAGAAA
CGGCCATCAATCGCTAACCGTGATGATTTAATCGAAATGTTCAAAACGTT
CGATCGTGACAGTTCAAAGACCGTCTTTGGAGGTGAATTCAGACAAATTT
TACTCAATATGGGTGATAAAATGAGTGAGCCAGAAATCGATACTATGGTT
TCACCCAGTGAAAATGCAGAAGGCTACATCCCTTACGAAACTCTCTTGGA
TTTCGTTATGTCAAAATAAATTAATATCGACTTAACTAGATTAGAAATAA
CATCTGAATTCTCATTCAAAAAGGGACAATTTCATAAACTTTCAAAGAAC
AAAAGGACTACTCTTCTGgagttgaaattttttgtttaaagctattttat
tttcatcaaatttatgcaaaaatattgTAATTTTATTATACCAATATTAT
ATTTTGTTGTAAGATAGGCCACTGATAAATTTGTGGAAAAGAAAACTAGA
GCTGAGTTTCAACAGAGGCTAACAtctgttaaaatt

Run BLAST on NCBI

transcript from alignment at sc0000119:191781..199157+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010958 ID=TCONS_00010958|Name=TCONS_00010958|organism=Clytia hemisphaerica|type=transcript|length=7377bp|location=Sequence derived from alignment at sc0000119:191781..199157+ (Clytia hemisphaerica)
CTTAAACAATACATCTTTAATTAACTTTAATGTTTTAgataaagaaattt
aaaagatATCACATTGATATGATGGCAAGCTTGACCTGGAAGAAATCAAG
GAAAAATGTCTCTTCTTCTGCTGCCAAACTCtttcaaaatgaagatgaag
aagaaaatgaagaagaaattatAGAAGATTGGAGAGATATTGTTCCATCA
AAAAAGAGTAAAGTAATGTTGGAAGATGGTGTCCAGAAAAGTAAACGTCT
AGTCAATGATGCAACCCAACTTGCAGACGAAGAGAGGTGGGTTTATAGCC
ATAAGTTTTGTATTTTAAATACCCCATGTCCTATTTCAATATAATCAACT
TGATCGTTCACTGTGGCTTTTTATTTCAATCCCCTAGTGATAATAGTTAT
TTGCCATCATAGATTAAGTATTTGCTTTGCTTCCAGTAGTATTTCTGAAG
GATCATTTTAAAATCTATCTTTGATCCGGAGAATTTTAATTTTCTACAAA
ATAGGACATTTTCATCATCTAACATTATTTCTTTCTTTAGGTATTGGGAA
GCATTGCAAAAATTTGATGAGGCTTTATCATTCACACCTCTTAATGAAAA
GATACACGAAATGAAAGCACAGGTAATTCTTCAGTGATGTTTATTGTACT
GGGTGTTAGATTGAACAAGATAACATGTGACATGCTTAGATAGTTCAACT
AAGGCTTTAGTAAAGTGATGTGAATTATTCTTCCCTCGAAATCATTTCTC
ATTTTCTATCCGGTAGATATATAATCGACTTATCTTCACATAACTTACTA
TAATTTccttaagagccagtttttttttaaacagggCAGGtacaatagtt
tgaaacttactAAAACttagtaaaatcccaaaatattttgatcttaaaat
ccataatggcagatttatgccaatttgaagtttgAACAGGAACAAACTCC
CCTGGGACAGGTCAGGtggctctaaaatacccctaaaatcaaatacttag
tgtttttgtgacgtcttaactccagctaccattttgaaaatcttggtttt
tttgaaaattgtatagtTTGCCGaccatagtttcagaatcaccaAAAACC
AATCCCTCATTTTGATTCGAGAAAGTATGGTTCtctatcaaaacaaattt
taactggaatgcccaaaaatgtcaaaaacttcaaattggcataaatctgc
cattatggattttcagaccaaaataatTTGGTTTTATTCTATCTTCTATA
CTaattgagtttatgaaaaaactttgtaacgctagcccagtaacatatgt
taaAGCCATTGACtttttacatagttataatgtatgttgattcagcagat
tgaaataaatagaatcttttgtaatgaataaagaaaatgtggagcaagat
ttttttcttccttttatttacaaatttgaaaggactcttttattaaaatt
ttgctgacatcagtttcagacgagtcgggtgtatataacaccgtataatt
cctttaaggtttctaaaatttgaacgccgcggctggaaaacctatccacc
ttcgatacaaaaagtctcacgctaagtttgacaagcgtagaaaactcgga
ttagagaagactctacacggctatttgtaaacgaaaaaagttctgacgtc
aatttcatgcaaaagtactgcgacgtcacaaagtttcaaataaaaaggtg
tggcattttGTTGCACAATTTCGAATTATTTCATATCAACACAagcaaca
aaatccaacattgttgtttgatgattaaacttcgtctaacattatttaaa
aaggtttcaatgttggttgcattgcatatgcgccggtcttaagctgtccg
catgtgaagccaacaaacgggaaaaccttcagtgctcaatctcaaagcgc
gagcctctccttcacaactaaggctttttctttcctagaagcaatcctct
caccacctcagacacctttgggcgtctgcaacgacgggtaccctcgataa
ttttgacagggtcactatatggcatttcattgaacacaaacttccgttat
cttaaaaagacatatcatcgaggcttacagacacaaaattttgactaatg
tagaaagtttagatgtataatttttattattgtattcggcattttaagcc
aaaacgatgtcaggcATTAACctacattatagtattttaaaggcttttgt
tgtgcaaggaaaaccgttaaccggcgtttgcgacgacgggaaccgtctag
ttatATACTATTCTAttatatccaaaaatgaaaaaaaaactaagtttcaa
actattggatcTGCCCCAAACTGCCCCATTCTTAAAAAAGCTGACTCTTA
ATATCTGACTAATGCGCCTGGTGTAGTGAAGCATTGATACTCTGTAATGG
CAtactttaaatttaatttttaattgatGGATCAAGCGCtttaaatagta
tttttttatgatttttcagaTTCTTCTAGAACTTGGAGAAATTTTCCCAG
CAGTACAAGCTGCTGAGCAAGTTGTCAAATTGAATCCAACATGGGCTGAA
GGTTTCCAAACATTGGGTAGAACACAGATTAGCATTGGAGAAATTGATAT
GGTTTGTTTGTTCAACTTTTATGTTAACTTCCCCATGTCCAAGTTGTAAA
TTTGGTTGCTTTTGGATAAATGTTTACTCAAAACATTTCCAGTATAATAA
GACAACAACAGCAGTTTGACATTTGATAGGTGTATTTAAACCTTTTAATT
CAGTGTTGATTCCCCATCATCACTAACTCAAATAAATGATATGATATTTT
ACTTCTCAGGCGCTGAAAAATTTTTGTCGAGCTTATCATCTGAATCCTAC
ACTTGACGATGTGAGTCCAATTGTATTTAATTTATTCAACTTCTGCTAAT
ATCTTATTTTTCTCATAATGTCATGATTTACATAATTCCAAAGGGGGGGG
TCAATACACCCCCTAGTCTAGAGCAACCCCCAAGTCCAGGTCCAGTCCCC
TCTCAAAATTTTATGGAACCTCCGCCCCCACCTCAAAATTAGGGTGTCAT
TGGGTTTTCCCCCACTTTCAAGACATTATGCACCACTCATATTAACTAAA
ATAAAAGCATATTCACTCTTTAAAAGTGTTGCTTTTGAGTCAATTCATTA
GTATCAATCAATTCAAGAAATTGGTTGAAATACATTTCAAGCGAAgcgag
aaagaaaattttaaggattttaaccCAGTCCAAGACTGCAAAACGAGATA
TTTGGAAAGATGGCTTCAAAGAACTTTGCCAACGCATTAATCCATCCTTT
CTTCATGACTGTTCccctttttgaaaactttcccatttccacaagaaata
tttttagccctcccccccccctttctgtGATTTTTAGAACATCTCTACCC
CCTTCCCTTTAATAAAAGAgggggggggtgcaaactatgattTATGGGAA
TTTGGTTGGTCTTTTTTAATCTCTACGTGAAtctaaaatttttcgctgat
tttGTAAATTCATATGTTGgtttttatccttttttatccagctgaagaaa
ttcaaaacattttgtaTAACATACAGCAGGGTTTATCCACATGTCAGGAA
TACCATCACTGCGTATTATGGAATGATGGCCTTTTAAACaccagaaaata
ttaaaatccaAGGAATGTTTCATTTCTAAATGTGATATGATGAGACATTT
TATTTGATAGAAAGTAGGAGATTAATAAGGAAGAAACTCCTGAATCTAGC
CtctaaaatttgtaaatttttctctaattctaTTTTGAACCATAGCTATT
CGAAGAAGACATCAAATGGGCAAGAGAACTTCTCAAACAGAaagaagaaa
tgaagaaaactgAAGAATCAAAAGAAACTGAACGTAGTAAtggtgaagaa
gaaaaatgcgCTAAATGTCACCGATGTTTCAAAGTCAATGAGAAAGCCTT
GTCCATGAATGGTAACGAAGAAAAGAGAACAGAAGATGAGATACCAAAAA
CATGAGTAAGTTTTAATTCCATTTTTATTTACTGTTTGTATTTCGAGGGA
TTGAGTTTAGTCGGTGTTGATATTCTTCATATATAACTCTGGTATCAACA
ATGCCAAAGAATGTCAAGATTTTAGCCCATAACGTTAGTTTTGAAATTAG
TTTTCCCTCTTTCAACATACTTTATAACATGAATATTAGGAGACGTGTAA
CCAACAGGAATGGATAATTCTCGTGTTAATAAAATCCCCGTTAATTTTTG
AAGGTTTACTCATAAACCTGCTCATTTGTGTCAATTTGTGATgttgtgtt
aatttcaaggccgttaaatgcttccatacttatattcatgtaataaggtt
TATTCGATTCATGATCAATCGAATTTTTTCGACAGTTGAATTCAACCAAA
TTTGAGCGACGAtttgtcgaaccaatcaaatttgacCAATGATTAATCGA
ACTCGATCGATCGAGTTTGATTGTTGAttgatcgaacgcaatcgaactcA
GTTACATATCAATGTAACTCGATGTGTGGTCATAGATTTGTAAAAGCCCG
AAGTACTAGATGTGCtcttgctgaaaagtgtgccgaggttaggtaggaaa
tcctagaatttcagcgtttgaccaatcagaagtttcacgggttttcgaaa
acaatagcaataatattttttccgatattcaatttttttgcctgcaattg
cttaaagcacgccatctagcccttcgggctttataaatctatttgTACGA
TTCACTTTGATTGCCATCCCGTGAAATTAGTATTTAGTTTATCAATTTTC
CAAAGAGATGCacaattttctttataagaacaattttataagaacacgag
gctgaaaattggccgGAACCCAAGAACAAATTAAGTACAATCCTCAGCCT
AAGATTTCAGAAATCACTTATAGAAAGTtctgattttaacagattttaag
tttttatgtaaagaaactaagcgttttaagaacatcgtaaggaCATTTAA
GcctggaaattttaaaagaattaagCCCACCCTGAGCCTAAAACtactgt
ttcttataaaaaaaagtgtatttagTTGGTTGACGATCCAGTCGAAAACG
GCTTCATAAAATGTCTCCTTAAATTTTCTGGTTATACGAgctcaaaaaat
gtcatatgagCATTAGAATTCTGGatttaaacattaaaaattcTCTTAAC
TTAGAATATCTTTCATTACTAATGTAAATTTTATGATGTGACACGTATAA
ATTTTGTGATGACAAGTTCATCGAGATAATGAACAGATGTGCAAAGTTTT
CATTTTGAGAAAGGGCTGATCAATCTTAATGACTCCATATTTGGTCATCT
CCTTATAAGGACTTTGTGTGATATATCATTTCTGCTAATATTTGACGGAC
CAACGCACACaaatcttttcaactttttctttaaGCTTTTGAGCTTTTTT
AGCTTGAGTTGTAACTTTTACATCAATTATAACACCAAATTAATATTTCC
ATAGCTCAGCAATGTCTTAAGCAgccattttttaaaacatagcCATGGCC
CTTACCAAGCCAAAAATTCACAAACAACTATGGTTAAAAAACCTATTTCA
CTCACAATTTCCAAAATGTTCCTTTCTATACGTTAACTGTAACTAATGGG
AAAACGTTGTTTTGTGATaatattttaataataattGGTCATCCGTATGA
ATTTTGattcaaattgattttgatattttcgatGTTGTCATTCTGAAGTG
TTTACTAGGGACCAAGGAATGATCAGTCTATCAACCCCTAAACATCAAAA
TTGGTTTAATACATTGGGCTATTCTAGAAATGGTCTGtaccctatgttga
ggaggagtgacgtccagggtggtctaaGAAGGGTCTGGTTTTCGAGTATA
GAAATCCAgcgtggtcagtaaaatgagggtgaaaatccagggtggtcagt
aaaatgagagtgaaaatccagggtggtcagtaaaacgaggtcgTAAATCC
AGACCTCAAATTCTTTCGGAATGAGCCCATTAGGTTTGCGTCTtaagtgt
tttctttttaattttaccttTTAAGACGTCACGTTTTAAGATCTCTAGAG
AAGGAATAAGCTTAAGCAAAAGTCCATTGAAACGAAACTTTCCGTCTCAA
TAAGCCTTCTATGGCTCATGGTACTAAACCCTTTTGTACAAGCCATTGTT
TGGCTCGCCTAAGAGCTTACTTAGCCATTCAATAACAGTTGCTTAGCCAT
TTAATGATTAGCAGTTTTCGATATTTAAACTGAGCCATCGCCCTTCCATA
TCTTCAGTTGCATATCAGCGCTCACACCAGAATTACTTTTTGAGAGAATT
CCTTCGTTATTTTTTCTTCTACTTCACAAGATGAGCGAAATCACTGATGA
TCAACTCGAAGAATTGAGAGTAAGTGTGACCATTATTTGTCTTTCTTCGT
GAGATGACTTGTAAGGCAGTAAACGTGGCCTCACATCCCGAGGGAATACC
CACATCGATCAGGTTGTCTTGAGACTGTTTATTTTCTGGAATTGGGAAAA
ACCTTTGTTGAATTCTTTTTGCAATCCTTTGAGCATCCTGACAGACTGAA
GACCGCCAGGCCTACTTAAGAAATCTAATCAAAGGTGTTTCTTTTgtgaa
taaataaaaacattttagttTCGAGTATATCCCTACGTTTCTATTGTTTT
AGGACGCTTTCACACTTTTCGACAAAAAAGGCGACGATAAAGTCGAGTTT
AGTCAAATCATCGACGTCTTGCGATCACTCAAACTCAACCCACTCACGAC
AGATGTCGAAAAAGTCATCAAAGATTCCGGCTTAGAAGGCACCCGTGTCG
ACTTCGCTACTTTCGCTAGCATTTACGAGCAATTCAAGAAACGGCCATCA
ATCGCTAACCGTGATGATTTAATCGAAATGTTCAAAACGTTCGATCGTGA
CAGTTCAAAGACCGTCTTTGGAGGTGAATTCAGACAAATTTTACTCAATA
TGGGTGATAAAATGAGTGAGCCAGAAATCGATACTATGGTTTCACCCAGT
GAAAATGCAGAAGGCTACATCCCTTACGAAACTCTCTTGGATTTCGTTAT
GTCAAAATAAATTAATATCGACTTAACTAGATTAGAAATAACATCTGAAT
TCTCATTCAAAAAGGGACAATTTCATAAACTTTCAAAGAACAAAAGGACT
ACTCTTCTGgagttgaaattttttgtttaaagctattttattttcatcaa
atttatgcaaaaatattgTAATTTTATTATACCAATATTATATTTTGTTG
TAAGATAGGCCACTGATAAATTTGTGGAAAAGAAAACTAGAGCTGAGTTT
CAACAGAGGCTAACAtctgttaaaatt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006159	XLOC_006159	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000119	supercontig	sc0000119:191781..199157 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.72837	0.910446	0.00633971	0	1.20579	0	0	1.03185	1.69708	1.15761	1.11612	1.50513	0.366373	0	0.771408	0.951802	1.04547	0	0	0.651992	6.93015e-06	7.74845	2.52842	0.876531	0.638084	0.617705	0.378184	1.48094	1.04671	2.84046

Blast

[Close]

BLAST of TCONS_00010958 vs. Swiss-Prot (Human)
Match: TTC33 (Tetratricopeptide repeat protein 33 OS=Homo sapiens GN=TTC33 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.579e-30
Identity = 56/126 (44.44%), Postives = 90/126 (71.43%), Query Frame = 3

Query:  201 KKSKVMLEDGVQKSKRLVNDATQLADEERYWEALQKFDEALSFTPLNEKIHEMKAQILLELGEIFPAVQAAEQVVKLNPTWAEGFQTLGRTQISIGEIDMALKNFCRAYHLNPTLDDLFEEDIKWA 578
            ++ +++LE   +KSK+L ++   LA+ +RY EA+QK+DEAL  TP +  ++EMK+Q+L+ L E+FPAV AAE  V+ NP   E +QTLGR Q+ +GEI +A+++F  A H+ P   ++++ED+ WA
Sbjct:   46 RRKEILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWA 171

The following BLAST results are available for this feature:

BLAST of TCONS_00010958 vs. Swiss-Prot (Human)

BLAST of TCONS_00010958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TTC33	1.579e-30	44.44	Tetratricopeptide repeat protein 33 OS=Homo sapien...	[more]

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TCONS_00010958 (transcript) - C. hemisphaerica