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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010956 ID=TCONS_00010956|Name=TCONS_00010956|organism=Clytia hemisphaerica|type=transcript|length=2518bp
cgattgttttttatttctgaatTATCTTTATTTGTAGAAAATTCGATTGT
GCGAATTTTCGAGATTCTGTCAAAGCTAGGAAATTAATTGGCTACCATAC
CGCTGAAGTGGGTTTTGCCCTCCTCGTGCGAAAAATGAAGCTCCTCTAAC
GTCGTTTTTCCTTTACAATACAGCGACATCTTTTAGTAACGTCTCAAATT
CTAGAAATCACTGGTGCAAAGTTGAAGAGGCCGTGGATTCATGTAGATTT
CTTCAAAGataatgtttttctttgttcaCTATGGAGagacACTGATGCTT
TACTGTTGAATTCAAATTGCCAATGCAAGATTCTTTtggaaagaataaaa
aaagcgtgtgctCTTAGAAGAGAAGAATTAATCGATATTGCGGACATGCA
GGCTGTAGTTCAGAAGTTGAGTGATGCACCAAAAAGTTCTTACGCAAGTA
GCTACCTTCAATATCGTGCAAACTATGTACTCATCAAAATCATTAGTAAG
TAACACATGTATCCCGAGAGACCCTTTTAGACCGACGACCGACGTTCGAA
AAGCTATTCCAGTGGGACTGAAATATTTCTATGATTGCACTCTTCCCgaa
aaaaatccgttcatggaccggtggaggatgaattgtccagggatGCCCAA
AAAAAGTCCTAAAAATTgcattgtccaggggtaaatctgcgatgtccagg
ggtaattcattgaaaaaataatatatcctacACTCCCGATGAACGGATTt
attctggaagagcccattaaaaCAAACACTTCTGCTACAAAGGGATAATA
ATTTAGCGTTTCTTTCGTTCATCACCCTTGAAGAGTACACTagtaacaaa
cttttttcattctTGTTTGGGTGATAAGAAATTAcctacagcacctgacc
ccgagaatgcagtaaaccccgagaatataggtttctcattttttagcgtt
gtagccctaacgatagttcaacgtCATAAAAAGTTGTATCAGAGCCTGCT
GTTACATATTACTTATCATTtatagacATAAAATTTAAACTTGAATTAGT
TTTTTCCAACGGAAATCTGAATCAAAGTTGATCGGATACAACCTGAATTG
aggcattttttaaataaatcttctccaaatcgaaatctattggaattaag
ttatgatgataggttATTTTCTTACTCCTAATGAACAAAggaaatgggaa
aaatagtccatttcaaaatttattgttctaaatcAGATATTTTGAANATG
GTTTAGATAGTGCAAACCCTGAATTCCTAAGTGAGTAAAGTAAAGGGATT
TATATTTATTTCGAATTTAACCAAAAGTTCAAATAAATGTAACCTCTAAC
CCCTTCTAACCTGGTGTTTGGTTTTGACGACGCTTTCAATTTAATTTCTC
CAAACATTACAAACCTCGAAAATCTGAATGCGATTTAGCCCAAATTTAGC
TCCACGGAATTAGAAAACACTTTGAATAACTGAAGTTCGAATGTTTGAGA
GTTTTTGTCTGAGTTAAGCATAAGTTAGACTGGCATTTACAGACGAATTT
CCTGCAGTTTTGTAGAGGCATGCAATTCAGATTATTGTTTTATCGAAACG
AATTTTTTGCATAAACCTTCGCGAGTTGtcttattaaaaattttcatcta
cTCAGCGAAAGAAGACTAAAGATGTGAAAGTTTTTATGCCTAAATAATTN
cccagacccgctgggaccccgcCCCAATTAGAAAActtgcctaagtttgg
aacaatagaatttctatccacaTTGGGACTTTAGTAGAAATCATTGTCCC
CGTTGTGGGAAAAGTTCCAACGGAGCTATGAGGCAATGGTGtagttacat
tattcacatattttaacaaaacattttcaacctacaaaataaaaacaact
ttcttgtctcttcttttcttcctttcttttacttttcctcatttgCNCGT
AAAGTGAACCCTGACGCTTACAACAAAGAATCACGTGACGTATTCAACAG
AACGGCTGTTTTGAAGAACAAAGGTGGACGTAACGATTCACGTACACAAA
ACCAAAGACCGAAAGCATCCAACGCAAACCTTTCGTCAGCTGGTGGTACA
CCTCAAAGGAGAACTTCCAATAGAGATCGCCATTGAATATTGAAAGTTGA
AGTTTTTTTCTGGTATATCGCCAGATCGTTCATCAAAACAGAAATTTCGG
GATAAATTCTGCCATGCTacaaagtacacccttacaagATTGTACAAGAA
TgttgtattttttcaaatgatcaatGAATGCAATCGTGTACAGTATCTCA
AATAGAGTAGGACATTGAAAAgagttttaaattaaaaaaagtttagtTGC
CAAGATCTTTAATGAAAGCGAGCCTTTCAATTATTGTCCCTGACTTCTTC
CcaacaagaagaaaaattcatctTGACTGATCCCTCTTGTATTGTATCCC
AGAAAAAAGNTGgaggttcaaaatttcattgaaaacattcattgttttta
aaaattcaaatctacatc Run BLAST on NCBI transcript from alignment at sc0000119:176480..179927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010956 ID=TCONS_00010956|Name=TCONS_00010956|organism=Clytia hemisphaerica|type=transcript|length=3448bp|location=Sequence derived from alignment at sc0000119:176480..179927+ (Clytia hemisphaerica)
cgattgttttttatttctgaatTATCTTTATTTGTAGAAAATTCGATTGT
GCGAATTTTCGAGATTCTGTCAAAGCTAGGAAATTAATTGGCTACCATAC
CGCTGAAGTGGGTTTTGCCCTCCTCGTGCGAAAAATGAAGCTCCTCTAAC
GTCGTTTTTCCTTTACAATACAGCGACATCTTTTAGTAACGTCTCAAATT
CTAGAAATCACTGGTGCAAAGTTGAAGAGGCCGTGGATTCATGTAGATTT
CTTCAAAGataatgtttttctttgttcaCTATGGAGGTTAGTATATTGAC
AGTCTACTATAGAATTTTTGATCTATACAACACAGATTTCATGAAATCTG
AAATTGGGCTTTTcgcaattttgtattttattttatagacACTGATGCTT
TACTGTTGAATTCAAATTGCCAATGCAAGATTCTTTtggaaagaataaaa
aaagcgtgtgctCTTAGAAGAGAAGGTACTGATTTTGTTCTTGTACACCA
ACTGAATGAGTTTGATGCACCGCATTGAGTTTATAAGTGGAATCTTCAAC
CCTTCCCTAGcaagaaaaagtttaagtctCAACAAAGAATTTGGTCTCAA
GATTTGCGCCGCGTTTAGAAAATGGATTATTGCGCTTTCTTTGTTCACGt
ggcatatttttcgaaatccacCGATATATTTCACTTATTTCTACGGCAAT
AGCAACACATTTCGTATTTTTTTCTTCGTCTTATATTCCCAAAGttgaat
tattttgataaatgcaGGTTCGAATAACCGGCAGTCTACTGTAtttgtgt
ttacaagttttagttttttaggTAAGGTAAAGATTTCAAATTGTGATTTA
TTGACACAAAGCGGTTTGGATGTTTTCAAAATCACCTCTATTGATAAtac
atatacacgttttttttttaagaaactagttttaccaagcagcctcaatg
tttcttaagaaatcggccttttgagccttaaatgtttcttacatgtttat
aaactttttaacataatcagcctcatggaaggctgggttggaaggttctt
aaaaaaaccgaattaaaaaaagttattttctcattcccagcctcagcatg
tttcttagatgtttcttagtttttaggcattctgagccttatgtttctta
aaaaaaaaacgtgtaatacgTCCTGTTACATTGTAGAATTAATCGATATT
GCGGACATGCAGGCTGTAGTTCAGAAGTTGAGTGATGCACCAAAAAGTTC
TTACGCAAGTAGCTACCTTCAATATCGTGCAAACTATGTACTCATCAAAA
TCATTAGTAAGTAACACATGTATCCCGAGAGACCCTTTTAGACCGACGAC
CGACGTTCGAAAAGCTATTCCAGTGGGACTGAAATATTTCTATGATTGCA
CTCTTCCCgaaaaaaatccgttcatggaccggtggaggatgaattgtcca
gggatGCCCAAAAAAAGTCCTAAAAATTgcattgtccaggggtaaatctg
cgatgtccaggggtaattcattgaaaaaataatatatcctacACTCCCGA
TGAACGGATTtattctggaagagcccattaaaaCAAACACTTCTGCTACA
AAGGGATAATAATTTAGCGTTTCTTTCGTTCATCACCCTTGAAGAGTACA
CTagtaacaaacttttttcattctTGTTTGGGTGATAAGAAATTAcctac
agcacctgaccccgagaatgcagtaaaccccgagaatataggtttctcat
tttttagcgttgtagccctaacgatagttcaacgtCATAAAAAGTTGTAT
CAGAGCCTGCTGTTACATATTACTTATCATTtatagacataaagtttaaa
cTTGAATTAGTTTTTTCCAACGGAAATCTGAATCAAAGTTGATCGGATAC
AACCTGAATTGaggcattttttaaataaatcttcTCCAAATCGAAANNNT
TATAGACATAAAATTTAAACTTGAATTAGTTTTTTCCAACGGAAATCTGA
ATCAAAGTTGATCGGATACAACCTGAATTGaggcattttttaaataaatc
ttctccaaatcgaaatctattggaattaagttatgatgataggttATTTT
CTTACTCCTAATGAACAAAggaaatgggaaaaatagtccatttcaaaatt
tattgttctaaatcAGATATTTTGAANATGGTTTAGATAGTGCAAACCCT
GAATTCCTAAGTGAGTAAAGTAAAGGGATTTATATTTATTTCGAATTTAA
CCAAAAGTTCAAATAAATGTAACCTCTAACCCCTTCTAACCTGGTGTTTG
GTTTTGACGACGCTTTCAATTTAATTTCTCCAAACATTACAAACCTCGAA
AATCTGAATGCGATTTAGCCCAAATTTAGCTCCACGGAATTAGAAAACAC
TTTGAATAACTGAAGTTCGAATGTTTGAGAGTTTTTGTCTGAGTTAAGCA
TAAGTTAGACTGGCATTTACAGACGAATTTCCTGCAGTTTTGTAGAGGCA
TGCAATTCAGATTATTGTTTTATCGAAACGAATTTTTTGCATAAACCTTC
GCGAGTTGtcttattaaaaattttcatctacTCAGCGAAAGAAGACTAAA
GATGTGAAAGTTTTTATGCCTAAATAATTNcccagacccgctgggacccc
gcCCCAATTAGAAAActtgcctaagtttggaacaatagaatttctatcca
caTTGGGACTTTAGTAGAAATCATTGTCCCCGTTGTGGGAAAAGTTCCAA
CGGAGCTATGAGGCAATGGTGtagttacattattcacatattttaacaaa
acattttcaacctacaaaataaaaacaactttcttgtctcttcttttctt
cctttcttttacttttcctcatttgCNCGTAAAGTGAACCCTGACGCTTA
CAACAAAGAATCACGTGACGTATTCAACAGAACGGCTGTTTTGAAGAACA
AAGGTGGACGTAACGATTCACGTACACAAAACCAAAGACCGAAAGCATCC
AACGCAAACCTTTCGTCAGCTGGTGGTACACCTCAAAGGAGAACTTCCAA
TAGAGATCGCCATTGAATATTGAAAGTTGAAGTTTTTTTCTGGTATATCG
CCAGATCGTTCATCAAAACAGAAATTTCGGGATAAATTCTGCCATGCTac
aaagtacacccttacaagATTGTACAAGAATgttgtattttttcaaatga
tcaatGAATGCAATCGTGTACAGTATCTCAAATAGAGTAGGACATTGAAA
AgagttttaaattaaaaaaagtttagtTGCCAAGATCTTTAATGAAAGCG
AGCCTTTCAATTATTGTCCCTGACTTCTTCCcaacaagaagaaaaattca
tctTGACTGATCCCTCTTGTATTGTATCCCAGAAAAAAGNTGgaggttca
aaatttcattgaaaacattcattgtttttaaaaattcaaatctacatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010956-exon-sc0000119-1491911889:176480..176765 | TCONS_00010956-exon-sc0000119-1491911889:176480..176765 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1510915933:176480..176765 | TCONS_00010956-exon-sc0000119-1510915933:176480..176765 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1575043694:176480..176765 | TCONS_00010956-exon-sc0000119-1575043694:176480..176765 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1491911889:176866..176954 | TCONS_00010956-exon-sc0000119-1491911889:176866..176954 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1510915933:176866..176954 | TCONS_00010956-exon-sc0000119-1510915933:176866..176954 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1575043694:176866..176954 | TCONS_00010956-exon-sc0000119-1575043694:176866..176954 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1491911889:177666..178317 | TCONS_00010956-exon-sc0000119-1491911889:177666..178317 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1510915933:177666..178317 | TCONS_00010956-exon-sc0000119-1510915933:177666..178317 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1575043694:177666..178317 | TCONS_00010956-exon-sc0000119-1575043694:177666..178317 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1491911889:178437..179927 | TCONS_00010956-exon-sc0000119-1491911889:178437..179927 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1510915933:178437..179927 | TCONS_00010956-exon-sc0000119-1510915933:178437..179927 | Clytia hemisphaerica | exon |
| TCONS_00010956-exon-sc0000119-1575043694:178437..179927 | TCONS_00010956-exon-sc0000119-1575043694:178437..179927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:176480..179927 + |
Blast
The following BLAST results are available for this feature:
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