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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010952 ID=TCONS_00010952|Name=TCONS_00010952|organism=Clytia hemisphaerica|type=transcript|length=529bp
GTTACCGTACATATTAATTTGTGAAAAGACATGTTGCTAAGTGCTTTTTG
CACGTGCGTGAAAAATGCAACAGTTATTAAAGCTGTTAGAAGGAACCAAT
CAGAAAGCCATTGTCATCATTGTCATACTACACACATTTTTGGATAAAGG
TAGCTTGAAAGAGAGAGTGAAGACATAATGTCTTACGTGTGTAGGCAAGA
ACATATAGATGCAGCGACAACAAGGTGAAAAGCGGAAAAAAAGGCTTCCA
GCCGATGTGAACGCATTTTCTAAACCCAAACGTACGTACCGAGGGTACAG
TGACAGTCAACTAAAGGAAGGGTTACGCCTTATGCAAGATGAGGGGCTGA
CATCACGGGAAGCGGCAGCTGCAGTCGGCATAAAAAGCCATACGACACTT
TGGCGTCATGCGACTGgaaaatcacagaaaaaagtTGGGCGCCCATTTGC
CTTATCGGAACAAACTGAAAAGTATCTCGCTAGTTTGGTGCAAGAATTGG
CAAGATGGCGCGTGCCTTTGGAAACACGC Run BLAST on NCBI protein sequence of TCONS_00010952-protein >TCONS_00010952-protein ID=TCONS_00010952-protein|Name=TCONS_00010952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MQRQQGEKRKKRLPADVNAFSKPKRTYRGYSDSQLKEGLRLMQDEGLTSR
EAAAAVGIKSHTTLWRHATGKSQKKVGRPFALSEQTEKYLASLVQELARW
RVPLETR Run BLAST on NCBI transcript from alignment at sc0000119:143943..145729+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010952 ID=TCONS_00010952|Name=TCONS_00010952|organism=Clytia hemisphaerica|type=transcript|length=1787bp|location=Sequence derived from alignment at sc0000119:143943..145729+ (Clytia hemisphaerica)
GTTACCGTACATATTAATTTGTGAAAAGACATGTTGCTAAGTGCTTTTTG
CACGTGCGTGAAAAATGCAACAGTTATTAAAGCTGTTAGAAGGAACCAAT
CAGAAAGCCATTGTCATCATTGTCATACTACACACATTTTTGGATAAAGG
TAGCTTGAAAGAGAGAGTGAAGACATAATGTCTTACGTGTGTAGGCAAGA
ACATATAGATGCAGCGACAACAAGGTGAAAAGCGGAAAAAAAGGTAAGTG
GAtcgtttttttatcattttttacgTTTCTTTGACAttctgacacccctg
tctcagtgacatGGAAAGACCCATTCAGCAAGTGTATTATTGAGCAactt
gaaaatttgtttttatgaaTGTTATTGCATCTGCCttattttttgtgtgt
tttaatCCATACTGTATTGTCTACGACCACCCGGGGGAAGACTTTTTTTG
GAGTCGGAATTCTCTCAATGGATACCCCTGTGGCAAAAATTTCGGCCCTG
GTGGGAAAATACTTtagaattttagccccacttggtaattaatttttatt
tcatcctCATTCGATAGTCAATGTTATTTCTAACTTTTCTTCCCTTTTGG
CCGAGGTTCTCTCTCTCTGGAGGTAGATAATTtgccaaaatttagtcatt
tCAGTGGTCCGTCCATTGGTCTTTAGTCTGTTGTTCCacatggggggggg
gcacttaggcaaaaatgggcgatgggtatgtgcggacagtaggggtcggt
tttttcacctttcaaagtctctctaagggtaggaaaaATCAGacagtttt
aaattagtctctctaagggtcggaaaattcaggacttttaggaatttttt
gatttccagagggtatttctctctaagggtatgacttttttcataaatcg
aaaaaaaaaaatacaataagtCTCTTCAAGGGTCACCTTTTTAGCAGAAA
TCAGTCTTTCTAAGGGtcagttttcggaggtcccgtccacacatacccct
cattcgccaaccctagtaccccccccccgggagtccAATATGTTTGTTTA
AATCTAACCGAGACGATTGATCAATATATTTACGTTTTGTCAGGCTTCCA
GCCGATGTGAACGCATTTTCTAAACCCAAACGTACGTACCGAGGGTACAG
TGACAGTCAACTAAAGGAAGGGTTACGCCTTATGCAAGATGAGGGGCTGA
CATCACGGGAAGCGGCAGCTGCAGTCGGCATAAAAAGCCATACGACACTT
TGGCGTCATGCGACTGGTAAGTTTTTGGTTATTCCCTTGCTGGCAATATT
CCCTCGTACTCATTTCCCTTTTCCGTGGATTGTGTATCGCTTGTTGGAAT
TATTGAAAAGTAGACATTCCTTTTTCACCGACTAAGTGTCCAATTTTTTC
GTTTACGGGCTTGaagtggggggggggctcaGTTACCAGATTAAATAGTT
CTtgttattttaactttttgagcaaCTGGGTGTGTAGCACTCACAGAAGC
ACCATCTTTGTCCATCAGTGATATCAAAAAGTGATACTCTGACTACGCGA
TTGTGGGGTTCCTAGCGTGAACTATCTTCTCTTACATTTAACAAAAAACA
CGCCATTGATATACCTTCTATACCCAACGCCCTATTCAATATCACGtaaa
aaaagtttacttttttGGTTTCAggaaaatcacagaaaaaagtTGGGCGC
CCATTTGCCTTATCGGAACAAACTGAAAAGTATCTCGCTAGTTTGGTGCA
AGAATTGGCAAGATGGCGCGTGCCTTTGGAAACACGC Coding sequence (CDS) from alignment at sc0000119:143943..145729+ >TCONS_00010952 ID=TCONS_00010952|Name=TCONS_00010952|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000119:143943..145729+ (Clytia hemisphaerica)
ATGCAGCGACAACAAGGTGAAAAGCGGAAAAAAAGGCTTCCAGCCGATGT
GAACGCATTTTCTAAACCCAAACGTACGTACCGAGGGTACAGTGACAGTC
AACTAAAGGAAGGGTTACGCCTTATGCAAGATGAGGGGCTGACATCACGG
GAAGCGGCAGCTGCAGTCGGCATAAAAAGCCATACGACACTTTGGCGTCA
TGCGACTGgaaaatcacagaaaaaagtTGGGCGCCCATTTGCCTTATCGG
AACAAACTGAAAAGTATCTCGCTAGTTTGGTGCAAGAATTGGCAAGATGG
CGCGTGCCTTTGGAAACACGCATGCAGCGACAACAAGGTGAAAAGCGGAA
AAAAAGGCTTCCAGCCGATGTGAACGCATTTTCTAAACCCAAACGTACGT
ACCGAGGGTACAGTGACAGTCAACTAAAGGAAGGGTTACGCCTTATGCAA
GATGAGGGGCTGACATCACGGGAAGCGGCAGCTGCAGTCGGCATAAAAAG
CCATACGACACTTTGGCGTCATGCGACTGgaaaatcacagaaaaaagtTG
GGCGCCCATTTGCCTTATCGGAACAAACTGAAAAGTATCTCGCTAGTTTG
GTGCAAGAATTGGCAAGATGGCGCGTGCCTTTGGAAACACGCATGCAGCG
ACAACAAGGTGAAAAGCGGAAAAAAAGGCTTCCAGCCGATGTGAACGCAT
TTTCTAAACCCAAACGTACGTACCGAGGGTACAGTGACAGTCAACTAAAG
GAAGGGTTACGCCTTATGCAAGATGAGGGGCTGACATCACGGGAAGCGGC
AGCTGCAGTCGGCATAAAAAGCCATACGACACTTTGGCGTCATGCGACTG
gaaaatcacagaaaaaagtTGGGCGCCCATTTGCCTTATCGGAACAAACT
GAAAAGTATCTCGCTAGTTTGGTGCAAGAATTGGCAAGATGGCGCGTGCC
TTTGGAAACACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010952-exon-sc0000119-1491911889:143943..144185 | TCONS_00010952-exon-sc0000119-1491911889:143943..144185 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1510915933:143943..144185 | TCONS_00010952-exon-sc0000119-1510915933:143943..144185 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1575043694:143943..144185 | TCONS_00010952-exon-sc0000119-1575043694:143943..144185 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1491911889:145036..145208 | TCONS_00010952-exon-sc0000119-1491911889:145036..145208 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1510915933:145036..145208 | TCONS_00010952-exon-sc0000119-1510915933:145036..145208 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1575043694:145036..145208 | TCONS_00010952-exon-sc0000119-1575043694:145036..145208 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1491911889:145617..145729 | TCONS_00010952-exon-sc0000119-1491911889:145617..145729 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1510915933:145617..145729 | TCONS_00010952-exon-sc0000119-1510915933:145617..145729 | Clytia hemisphaerica | exon |
| TCONS_00010952-exon-sc0000119-1575043694:145617..145729 | TCONS_00010952-exon-sc0000119-1575043694:145617..145729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000119 | supercontig | sc0000119:143943..145729 + |
Blast
The following BLAST results are available for this feature:
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