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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010947 ID=TCONS_00010947|Name=TCONS_00010947|organism=Clytia hemisphaerica|type=transcript|length=1672bpRun BLAST on NCBI protein sequence of TCONS_00010947-protein >TCONS_00010947-protein ID=TCONS_00010947-protein|Name=TCONS_00010947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp MGQLPKFSLEGDRYDQSTYWGRLQRCFDVVDPRTLFVTKEGLNHSLDLLKRun BLAST on NCBI transcript from alignment at sc0000119:704..57929+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010947 ID=TCONS_00010947|Name=TCONS_00010947|organism=Clytia hemisphaerica|type=transcript|length=57226bp|location=Sequence derived from alignment at sc0000119:704..57929+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000119:704..57929+ >TCONS_00010947 ID=TCONS_00010947|Name=TCONS_00010947|organism=Clytia hemisphaerica|type=CDS|length=13566bp|location=Sequence derived from alignment at sc0000119:704..57929+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010947 vs. Swiss-Prot (Human)
Match: SFXN5 (Sideroflexin-5 OS=Homo sapiens GN=SFXN5 PE=1 SV=1) HSP 1 Score: 379.022 bits (972), Expect = 9.911e-127 Identity = 171/318 (53.77%), Postives = 240/318 (75.47%), Query Frame = 3
Query: 135 PKFSLEGDRYDQSTYWGRLQRCFDVVDPRTLFVTKEGLNHSLDLLKNFQEGKNPANITNEELWEARKIKEAIVHPDTGENILMPFRMSGYVPFGTFTVIGMLIPGASVPKVIFWQWLNQTHNACVNYSNRNATKPTPMSKFIQSYVGAVGSALTIAVGISMGIRKTXXXXXXXXXXXXRFVAYPATSTANIANVYLMRQNELQQGIDVYDDKGNTVGTSKAAAKKAVFETALSRVILPAPILIFPPVIMAMLEKTKFMMRRPGLSLPINAVVCTLAFGIALPFAIALFPQQTKMERGKLEEDLASKTTSEFVYFNKGL 1088
P F L R+ Q++++GR + D++DPRTLFVT+ L ++ LL++++ G +TNE+LW A+KIK+AI+HPDT E I MPFRMSGY+PFGT V+G+L+P ++ +FWQWLNQ+HNACVNY+NRNATKP+P SKFIQ Y+GAV SA++IAVG+++ ++K + + +LL RFV +PA ++ANI NV LMR EL++GIDV D GN VG+SK AA+ A+ ETAL+RV+LP PIL+ PP++M+MLEKT + RP L LP+ ++VC AFG+ALP AI+LFPQ +++E +LE ++A T+S V +NKGL
Sbjct: 23 PPFQLGKPRFQQTSFYGRFRHFLDIIDPRTLFVTERRLREAVQLLEDYKHGTLRPGVTNEQLWSAQKIKQAILHPDTNEKIFMPFRMSGYIPFGTPIVVGLLLPNQTLASTVFWQWLNQSHNACVNYANRNATKPSPASKFIQGYLGAVISAVSIAVGLNVLVQKANKFTPATRLLIQRFVPFPAVASANICNVVLMRYGELEEGIDVLDSDGNLVGSSKIAARHALLETALTRVVLPMPILVLPPIVMSMLEKTALLQARPRLLLPVQSLVCLAAFGLALPLAISLFPQMSEIETSQLEPEIAQATSSRTVVYNKGL 340 The following BLAST results are available for this feature:
BLAST of TCONS_00010947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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