TCONS_00010944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010944
Unique NameTCONS_00010944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010944 ID=TCONS_00010944|Name=TCONS_00010944|organism=Clytia hemisphaerica|type=transcript|length=692bp
CAAACTGGTaatctaaatttcaagaagAAAGAATTATTCGCAACACTAAA
AAGAAATCTTGATAACAATGCGTCGAAACTCAATACAGCCtcttcaaaaa
ttcaaatatttcaagCATAATTAATGATCCATGTTAAGTTTTTTTCTGAA
CACACTGTAGATAAATCTAatatctaaaaatttcaaaaaccacaaaattt
ctttacacaacattagaaaaagttgaaaacctCTTGTTGAAAGCCTCTTC
TTTCTCTTGTATGCACATCAAAACATTCTACAAATCGTGTGTTTGAACAG
GCGAAACGTATAATCCAATCAAATCACAGGAGCTCTCTTCGACATCACAC
ACAAAATGATGGAATCTACTCTCAAAAAAATCTATTTGctgaataaaaat
ttaaatacttTTCTGTAAATACACTCTCTCTCACTACCATACTACCATTT
TTTTTCGTcgtttgaaaaaattgatttagaAATTCGTGATTGTTGGATTT
GTTCAGTTGTTGTCGAGTGAATACAAATCCAGACGCACGCATATAAGGTT
ACGAAATAGAACAAAAGAACTTCATAATTAAATCAATTGTTCTTTTACTG
AGTAGATCATTTAATTGATAAATTGACTTCTATTAAATTTCGAACAATAA
AAAAGCAATTTGCTCGCTCCATAGCAACTGAATGGTTTCCAG
Run BLAST on NCBI

transcript from alignment at sc0000118:351605..352296

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010944 ID=TCONS_00010944|Name=TCONS_00010944|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0000118:351605..352296 (Clytia hemisphaerica)
CTGGAAACCATTCAGTTGCTATGGAGCGAGCAAATTGCTTTTTTATTGTT
CGAAATTTAATAGAAGTCAATTTATCAATTAAATGATCTACTCAGTAAAA
GAACAATTGATTTAATTATGAAGTTCTTTTGTTCTATTTCGTAACCTTAT
ATGCGTGCGTCTGGATTTGTATTCACTCGACAACAACTGAACAAATCCAA
CAATCACGAATTtctaaatcaattttttcaaacgACGAAAAAAAATGGTA
GTATGGTAGTGAGAGAGAGTGTATTTACAGAAaagtatttaaatttttat
tcagCAAATAGATTTTTTTGAGAGTAGATTCCATCATTTTGTGTGTGATG
TCGAAGAGAGCTCCTGTGATTTGATTGGATTATACGTTTCGCCTGTTCAA
ACACACGATTTGTAGAATGTTTTGATGTGCATACAAGAGAAAGAAGAGGC
TTTCAACAAGaggttttcaactttttctaatgttgtgtaaagaaattttg
tggtttttgaaatttttagatatTAGATTTATCTACAGTGTGTTCAGAAA
AAAACTTAACATGGATCATTAATTATGcttgaaatatttgaatttttgaa
gaGGCTGTATTGAGTTTCGACGCATTGTTATCAAGATTTCTTTTTAGTGT
TGCGAATAATTCTTTcttcttgaaatttagattACCAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006149XLOC_006149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010944-exon-sc0000118-1491911889:351605..352296TCONS_00010944-exon-sc0000118-1491911889:351605..352296Clytia hemisphaericaexon
TCONS_00010944-exon-sc0000118-1510915933:351605..352296TCONS_00010944-exon-sc0000118-1510915933:351605..352296Clytia hemisphaericaexon
TCONS_00010944-exon-sc0000118-1575043694:351605..352296TCONS_00010944-exon-sc0000118-1575043694:351605..352296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:351605..352296 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0734529	0.0716281	0.0831671	0.081366	0.396221	0	0.188871	0.265227	0.433281	0.15334	0	1.12514	0.244256	0.152197	0.250254	0.0895202	0.110282	0.113035	0	0.490243	0.852221	0.935288	0	0.153136	0.0788631	0.0703834	0.302155	0.107489	0	0.0830631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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