TCONS_00010940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010940
Unique NameTCONS_00010940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010940 ID=TCONS_00010940|Name=TCONS_00010940|organism=Clytia hemisphaerica|type=transcript|length=550bp
TTAATTAAACGACTATATACAACTATCTAGCCACTGGTAGTTCTATTGAT
ATTCTTACTTGCCAATAACCTAGTAccattaaaaatgaagaagttacaga
aaaagaaaaacacaaaaaataaataacttgTGCCTGCATCACGCCACCGA
AGCACTGAGCGTTGTGAGAGGTAGTGACGAAAAACTTGCCCTGTACCACG
TGAGCCAAGCAACTACCTTTCATAGTCTATTAGAAAACGAACTCAGCCTG
CGATAATACAAACTATGATGATCTTGCCAGCTTTCCAGCCCACCATATTG
ATGACTGAAACCCAACTACCACCTAGCTATCTGGGAACCAGGTACCCCTA
AATTCctataaaatttcaattaaataaTTCCAGTCTAAAGTACTACAATG
AATGTAACTTAAAaagcttagaaaaatccctaggaaacgATAAAACATTC
ATCACACAATACACTCACACATCGATCTCAGAGTCACTTTTAGGGTTGAA
ACCAGACCGCCGTCAAGGTTTCTGAGAGAACCGAACCGCCGTTCGAAATT
Run BLAST on NCBI

transcript from alignment at sc0000118:306557..307106

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010940 ID=TCONS_00010940|Name=TCONS_00010940|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0000118:306557..307106 (Clytia hemisphaerica)
AATTTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGGTCTGGT
TTCAACCCTAAAAGTGACTCTGAGATCGATGTGTGAGTGTATTGTGTGAT
GAATGTTTTATcgtttcctagggatttttctaagcttTTTAAGTTACATT
CATTGTAGTACTTTAGACTGGAAttatttaattgaaattttatagGAATT
TAGGGGTACCTGGTTCCCAGATAGCTAGGTGGTAGTTGGGTTTCAGTCAT
CAATATGGTGGGCTGGAAAGCTGGCAAGATCATCATAGTTTGTATTATCG
CAGGCTGAGTTCGTTTTCTAATAGACTATGAAAGGTAGTTGCTTGGCTCA
CGTGGTACAGGGCAAGTTTTTCGTCACTACCTCTCACAACGCTCAGTGCT
TCGGTGGCGTGATGCAGGCAcaagttatttattttttgtgtttttctttt
tctgtaacttcttcatttttaatggTACTAGGTTATTGGCAAGTAAGAAT
ATCAATAGAACTACCAGTGGCTAGATAGTTGTATATAGTCGTTTAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006145XLOC_006145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010940-exon-sc0000118-1491911889:306557..307106TCONS_00010940-exon-sc0000118-1491911889:306557..307106Clytia hemisphaericaexon
TCONS_00010940-exon-sc0000118-1510915933:306557..307106TCONS_00010940-exon-sc0000118-1510915933:306557..307106Clytia hemisphaericaexon
TCONS_00010940-exon-sc0000118-1575043694:306557..307106TCONS_00010940-exon-sc0000118-1575043694:306557..307106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:306557..307106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232253	0.240276	0	0.175221	12.7513	12.5452	10.3996	14.3472	10.264	9.24371	11.7357	7.82351	9.75883	13.4347	1.45376	1.78941	2.22762	2.31537	0.496341	1.08743	2.99464	1.60929	0.190036	0.925459	20.7517	30.4044	1.2994	1.12438	0.486839	0.30252
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top