TCONS_00010937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010937
Unique NameTCONS_00010937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010937 ID=TCONS_00010937|Name=TCONS_00010937|organism=Clytia hemisphaerica|type=transcript|length=779bp
ATTATTTATCTTGCAACAGTAGactcttaaaagctcattttccaAGAATC
TTTTACCAATTTTTCTGAACCTTTTTCTTCGGGAGCTGCAGTGGCTCACT
TAGCGCAGGCCTCTATCATGAAGGTTCCGTTATTAAAACTCATGAGCGAC
ACGGCACCTTTTATGGGGCTTATGCCGacccggcggaagcggggagactg
ggtaGACTCCAGCCACTCCCCACTtgtgagcaaatgagatttttttctta
aatttctagCGAATTCTATCTCactttgagccttcagcctccccacgtTT
ATtattgttccgccgggcctgttatgttatctgatattccaatggccgcc
cacgctaaagctttaAAGAAGCGCGCTAATTTACATCGGCGaagaatgat
agtcggcctttaaTGTGCCGAGACCAACTGACCTTGTCTGGAAAATTCTG
TCTGGTCAAATTATTCTGTAAAAAAATGAGTACGCCCCTTGAACAGACAg
gtgttgaaaattttctcgaCCTTCAGATTTTTAGTGTTTCTTTGCCAGGT
AAGGGGCTTATGGGACACTTTTCTTAGGGCCTATTTTATTAgttagtgat
ttgtcttagactatagcattgTCTACCTTCCATAGGTCCTCTGTATAGAG
TCGAAAAAGTCAGCGTCATTAAATCCCCATTTACGACTCATTAATCATgc
tatatttttgagaatttcccAACTGAGGCTGGGGTCATGCAATAATTATG
ctgattttttagattttgtctGTTCAAGG
Run BLAST on NCBI

transcript from alignment at sc0000118:129302..130080

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010937 ID=TCONS_00010937|Name=TCONS_00010937|organism=Clytia hemisphaerica|type=transcript|length=779bp|location=Sequence derived from alignment at sc0000118:129302..130080 (Clytia hemisphaerica)
CCTTGAACagacaaaatctaaaaaatcagCATAATTATTGCATGACCCCA
GCCTCAGTTgggaaattctcaaaaatatagcATGATTAATGAGTCGTAAA
TGGGGATTTAATGACGCTGACTTTTTCGACTCTATACAGAGGACCTATGG
AAGGTAGAcaatgctatagtctaagacaaatcactaacTAATAAAATAGG
CCCTAAGAAAAGTGTCCCATAAGCCCCTTACCTGGCAAAGAAACACTAAA
AATCTGAAGGtcgagaaaattttcaacaccTGTCTGTTCAAGGGGCGTAC
TCATTTTTTTACAGAATAATTTGACCAGACAGAATTTTCCAGACAAGGTC
AGTTGGTCTCGGCACAttaaaggccgactatcattcttCGCCGATGTAAA
TTAGCGCGCTTCTTtaaagctttagcgtgggcggccattggaatatcaga
taacataacaggcccggcggaacaataATAAacgtggggaggctgaaggc
tcaaagtGAGATAGAATTCGctagaaatttaagaaaaaaatctcatttgc
tcacaAGTGGGGAGTGGCTGGAGTCtacccagtctccccgcttccgccgg
gtCGGCATAAGCCCCATAAAAGGTGCCGTGTCGCTCATGAGTTTTAATAA
CGGAACCTTCATGATAGAGGCCTGCGCTAAGTGAGCCACTGCAGCTCCCG
AAGAAAAAGGTTCAGAAAAATTGGTAAAAGATTCTtggaaaatgagcttt
taagagtCTACTGTTGCAAGATAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006142XLOC_006142Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010937-exon-sc0000118-1491911889:129302..130080TCONS_00010937-exon-sc0000118-1491911889:129302..130080Clytia hemisphaericaexon
TCONS_00010937-exon-sc0000118-1510915933:129302..130080TCONS_00010937-exon-sc0000118-1510915933:129302..130080Clytia hemisphaericaexon
TCONS_00010937-exon-sc0000118-1575043694:129302..130080TCONS_00010937-exon-sc0000118-1575043694:129302..130080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:129302..130080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124483	0.485563	0	0.068947	0.0839364	0	0.0800215	0.0749151	0	0.194903	0	0	0.206975	0.257934	0.671514	0.265498	0.0934491	0.383129	0.396986	0.207708	0	0.176119	0.42819	0.324406	1.00239	0.954251	0.0853457	0	0.276334	0.28154
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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