TCONS_00010936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010936
Unique NameTCONS_00010936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010936 ID=TCONS_00010936|Name=TCONS_00010936|organism=Clytia hemisphaerica|type=transcript|length=281bp
TAGAGTCGgttaaaaaaagttagaaaaactGCAGATGACTTCAAAGTCCA
TTccaccccagctggcacacaacttTGTTTCAACGCTAATCTaacgtcaa
atggacgttgtgaacgttagataaacgttgaaacaacgttgtgtgccagc
tgggatagaGGTTAGTTTTGTTTGTACCTTTTTCAACCCTTCGATTACGT
CATCAGGGGTTGGTTCGTCTTTCGACATTTTCCAGACGTCACATGTATTC
TCCTCATCCGTTTTTCGAACAACCAACCGCT
Run BLAST on NCBI

transcript from alignment at sc0000118:126722..127002

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010936 ID=TCONS_00010936|Name=TCONS_00010936|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0000118:126722..127002 (Clytia hemisphaerica)
AGCGGTTGGTTGTTCGAAAAACGGATGAGGAGAATACATGTGACGTCTGG
AAAATGTCGAAAGACGAACCAACCCCTGATGACGTAATCGAAGGGTTGAA
AAAGGTACAAACAAAACTAACCtctatcccagctggcacacaacgttgtt
tcaacgtttatctaacgttcacaacgtccatttgacgttAGATTAGCGTT
GAAACAaagttgtgtgccagctggggtggAATGGACTTTGAAGTCATCTG
CagtttttctaactttttttaacCGACTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006141XLOC_006141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010936-exon-sc0000118-1491911889:126722..127002TCONS_00010936-exon-sc0000118-1491911889:126722..127002Clytia hemisphaericaexon
TCONS_00010936-exon-sc0000118-1510915933:126722..127002TCONS_00010936-exon-sc0000118-1510915933:126722..127002Clytia hemisphaericaexon
TCONS_00010936-exon-sc0000118-1575043694:126722..127002TCONS_00010936-exon-sc0000118-1575043694:126722..127002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:126722..127002 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.419692	1.02235	0.50177	0	0.976417	1.352	16.2121	15.3077	1.88076	1.52809	1.58363	1.12267	1.41539	0	11.1899	8.64725	0.52391	0.944458	1.3382	0.714083	57.4103	62.3547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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