TCONS_00010910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010910
Unique NameTCONS_00010910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010910 ID=TCONS_00010910|Name=TCONS_00010910|organism=Clytia hemisphaerica|type=transcript|length=415bp
aatgatAAAGAAGCAGAAACAAAAATCAACAACTTGATTAAGGAAAagtt
tgaattgaaaaaaattaaagaTGAAGAATTGGTAATGCTTTCAACTTCTT
GTGATGAACTAAAACAAGAAAATCTCAAATTGAACAAGGAGAATACACAA
AATATGTCGATCAGCTCAACATCTCAAGGCATTAGATCTTTAAAGGATGA
AATCCTGTCACTGCAGTTGACAAAATACAGCTTACAAAAGAAGATCAAGG
ACCAGGACCATCAGTTGCAATCAGAATGTCGTGCCAGGGATGATACCTCC
AAACAGattgaaatcttcaaaaaatctaCAGAGGAGTACAAACAACAATG
CGAGGGAGTGTCCAAAAGATTACATCATCTGTCCAAACTTGGCCGAAATT
AACAAGGTTGCGCCG
Run BLAST on NCBI

transcript from alignment at sc0000118:133054..139778-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010910 ID=TCONS_00010910|Name=TCONS_00010910|organism=Clytia hemisphaerica|type=transcript|length=6725bp|location=Sequence derived from alignment at sc0000118:133054..139778- (Clytia hemisphaerica)
AATGATAAAGAAGCAGAAACAAAAATCAACAACTTGATTAAGGAAAAGTT
TGAATTGAAAAAAATTAAAGTAAGAATTTATATTTTGAGTTCACTGAAAA
CTTAATTTACTAATAGAATATCCTGAGTTTTTGTTTTTTGCTCTGTTTGC
TAGCTAAAAGATGAGCTCTTATTTTTATAGAACAGAACCCAAATTACCAG
GTCATTCATCTTATACCTAGAACAGATTTGAATCTAGTAGTATCTAGGAA
TATTCTAATCTGTTGGAGTTGAAAATTGTACGGTTTTCCAGCTAGACAAA
ACTCAAAAAAGTATAAATCATTATAAAACTCTTCAGTGATTGCCTTTCCA
TTATTAAAACTTTGAGTATTTGGATGGGTCACAGGCAAGAAACAACAAAA
ATTTATTTATTCATTGATAAATTTTNNNNNNNNNNNNNNNNNNNNNNNNN
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TGCTCTACCATAGAGTAGGGAGAAAATTTATCAATGAATAAATAAATTTT
TGTTGTTTCTTGCCTGTGACCCATCCAAATACTCAAAGTTTTATAAATCA
TTCTTTGATTTTACAGAACAAAATTCAAATAGAACAGATCACCATTTCCA
ACTGGAACATGAATTTAGAACACATTTTTGAAAAATACCCCTTCGTTGTC
ATTCCTGAATGATTTTGTGGTCATGTTTTTAATTGAATTTTTTTTTCTTT
CAAGGATGAAGAATTGGTAATGCTTTCAACTTCTTGTGATGAACTAAAAC
AAGAAAATCTCAAATTGAACAAGGAGGTGAATTTCTTCTTATTAAGTTGC
CATAATTTTTTTTTATTAAACAATTATTGGACAAAGCCGAATCCAATATG
CAAAAATATTGGGCGTCATATTGATGAGACTGTGTCCAAATTGGAATGGT
TTATCCTTTCATCGCTAAAATATTTCTCGTTCTCAAGAAGCATAATTCCA
ATTTATAAGCTCATTAATCTGGTTTCTCATCAAATTCTTCGCGTGACGTC
ATTCGAATGTTGCTATTACCCGCGTCGAATAATAAAATAGAATATAGGCT
TTTCCATGCCGTTGAAATGTCTTTGTGGGAAGCAAATTATAAATTACAGT
TTAAAGAAATATTTAAAAATTTCATTTCAGCTTGAAAAGAAGACAAAGCT
ACATGAAGAAGAAAAGGTTTTCATTATCTCGTTATTATTTTTATGTGGTT
GTATGACAAGTCCTGTTGCTCATAGCAATGTGAATTTACGTTCCCTAATT
GGAAATTCATTTTATATCAAAACAGGGGAAAAAATATTCAGGGGGTTAAT
CCACGAAGAATTTCCAGGGGTGTAAAGGAGTGTTTTACATTTTTCCAGGA
GGTAAAAAGTTACTACAGGGGTATAAAACTGATTTAATCCATCCACCCTC
ACTTAAAGGTATGGAAAGTTTTTCAAGGGTCTTAGTTTGCAAAATTTGTC
ATTTTCCAGGGGATATCCACGCATATCCTAGAATATTTTTGATTTGAAAA
GTTCAACTATTGCAGTATAGGTATTTAATGGAACAGCCAAATGGTTGTCT
TATTTTCATCTTTGTCTATATCTTACTGCATTTTATATCCAGAATACACA
AAATATGTCGATCAGCTCAACATCTCAAGGCATTAGATCTTTAAAGGATG
AAATCCTGTCACTGCAGGTTAGTCCATCTTCTTCAATATTAACTTTTAAC
ATCTCTGGAAAGTACAAATTCGACTAATCAGATTTCTGTTAGTTTTTCTT
TGATTGAAAGTGTATTGCTCATATCAGAATTTGCACAATAATTTATACAA
TTACTACTACTACTACTCATGAAAATATTGAAAAATGACTTATTCGAGAG
TGTTTTTCTGATATTTTTATAATATTAGTATATAAGATTCCACTGAAGAT
TGGCGTGGAGGTGCAAACTCTATATGAAACTCTGAGTTTGAAATTTAAGA
GTTTAGTAAACTTTCAATGTACAATAACATTGTTCTTATTATCGTAATTT
TACCTATTCTTTCTCAATCAGTTGACAAAATACAGCTTACAAAAGAAGAT
CAAGGACCAGGTACTAAATCCAATCTTTCTGACGCACGCTCATTCTGTTC
TTCTCATTGTTATTTTTCTCCCGTTCGAATTTTGAGAAGGGATAAAAATA
AGTACCTTGGAAATGCAAACCATAGGGAAATGCTGTAAACTGTGGCAAGT
TTCATATTGAAGGACTAGAAGAGCTTTAATTAAGTAAAAAAAATCAATAA
AATCGCTTTCTATTTCTTTTTCCAACTAGAATTGTCCCGCATGTATGCCA
ATTAGATTTCAAAGAACTTTTAGTTTAAAATTGATGAGTAAGCAAACAAT
ATCAAGGCTAGAGATAGAGGAACTGGGCACTACGTTGGCTGATCGTGAGT
GTGGAGGGAGGGTTGTCTCCGACCCACTACCACTAGATCGAAGGATGATG
ATGAGTAAACAAAGAATATCGATTTTTTAGAAAACAAAAGCTTTAACCCT
ATAAACTGTTCATTTACATCAGGACCATCAGTTGCAATCAGAATGTCGTG
CCAGGGATGATACCTCCAAACAGATTGAAATCTTCAAAAAATCTACAGAG
GAGTACAAACAACAATGCGAGGGAGTGTCCAAAAGATTACATCATCTGTC
CAAACTTGGTATGAATGTTTTATGTTTTTGTTTGTTACCCTTTACATCCT
AGAGAATACGAAAATGGCCTAATATGGGTAAAAATTTGTAGCAACTTGTT
CCTCGAGAANCCCCTTTCTGGGCAAATTTTCTACTTAAAATTGGATATCA
AAGATTGCACTCCAAGAACAATCTCCACTGGAATTTTTGAGCTGGGAACA
TGTCTTGATGATTACTGATTACATGTCTTGTAAATGCGTTCCTTTACCTT
GAAGAAAATCTTATAAAAATTTATCACTTCCAATTTTCTCGACTTGGGCA
GTTCTTATTGACTCTATCTTTGTACTTACTTGTTATACAAGACTTTAACG
TCTGATTTGTCGATAAGATAAATAAAATTTTCAGAAAGTTGCATATGATC
AAATATCATGCAACACATGTGGTTATTCGTTATTCTTTTACAATAACATC
CTTCGGATATTAGTGTTCTTAACTTGTTCTTAATATTTTGCCATCGAAGT
CTTACCTTCTTAATAATTTGTTCTTATAAAAACGTGTATTCGGGCAGTTC
TTATGGAATCTTATGTGATACATTTTCTTAGATTTTAACGTCTGAAATAA
AGAAAATTTTCAGAAAGTTGCGTATAATCAAATATCATGCAGGCGGTTTT
TCGTAAAATGAAATATATATAGATTGATTTTTTTGGAAATTTTATCTTTT
CACATGTACGTGAAGTCAGACGTAAAGTTGTTTTCACCTGGTCATAAACT
TTTAACCCTATGCAGGTGGAGGTGACTTTTTTCAGGTGGGGTTAGAGAGT
TATTATTGACTAGTTTCTTATTTTGTCTCAAAAACTTTCTTTCCTCAACC
TAGTTTATAAAATGGTACAAAGACAATAAAGAATTTGTTAATTTTTTTTC
CAGCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TAATTTTGATTTCATCGTGTTTAAGCCACCTTCCCAACATCTCAAAGGAC
TTTAAATGCGTTCAGCAAACAGCTAAACCGGCGTGCGACGCCGGGTACTA
CCGGCTAGTTTTACTTTAAATAACCAGGTTTTTAGTCTAAAACTACCTTA
TTTTGGGGCCATTAAGAGGTATAATTTCCATCCCCCATATATTAACTTTT
GGAAATTTTTCCAACTCCTCCCTCCCCGTTTATTCCGACCCCCTAGACAT
CCAATCTCAAAACCCTACCTGGTAGCCCATGTGTGGAAGCTGGACTACGT
TTTATGTCAAGCCTTAGACTGCTGGCATCCATTAACGGCTTTGCGCTCTT
CTAACTGTGGTTTTGTGGAGGTCTGCGGTTTAGACTAAGCTTAGTTGAGC
CTGTGTTACAAAAAAATGTCATTGAGTTTTAATTTAAGACTGGCTCTGAG
CCGAAGAGCTGTTGTTTTGTTAAGTTTGTATAGAATTTAAGAAGGGTTTT
GGCGTCACCTTTACTAGGAAGAATAGTTTTGATAAATTACGTCAATGAAG
CGGGCGCGAAGTTTAAAGGCTATTTTGGATTGGAAAACCCGCGCTTTATA
GGCCGAAATTAACAAGGTTGCGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006126XLOC_006126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010910-exon-sc0000118-1575043694:139710..139778TCONS_00010910-exon-sc0000118-1575043694:139710..139778Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1575043694:137703..137774TCONS_00010910-exon-sc0000118-1575043694:137703..137774Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1575043694:136812..136886TCONS_00010910-exon-sc0000118-1575043694:136812..136886Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1575043694:136419..136457TCONS_00010910-exon-sc0000118-1575043694:136419..136457Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1575043694:135821..135956TCONS_00010910-exon-sc0000118-1575043694:135821..135956Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1575043694:133054..133077TCONS_00010910-exon-sc0000118-1575043694:133054..133077Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1510915933:139710..139778TCONS_00010910-exon-sc0000118-1510915933:139710..139778Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1510915933:137703..137774TCONS_00010910-exon-sc0000118-1510915933:137703..137774Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1510915933:136812..136886TCONS_00010910-exon-sc0000118-1510915933:136812..136886Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1510915933:136419..136457TCONS_00010910-exon-sc0000118-1510915933:136419..136457Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1510915933:135821..135956TCONS_00010910-exon-sc0000118-1510915933:135821..135956Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1510915933:133054..133077TCONS_00010910-exon-sc0000118-1510915933:133054..133077Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1491911889:139710..139778TCONS_00010910-exon-sc0000118-1491911889:139710..139778Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1491911889:137703..137774TCONS_00010910-exon-sc0000118-1491911889:137703..137774Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1491911889:136812..136886TCONS_00010910-exon-sc0000118-1491911889:136812..136886Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1491911889:136419..136457TCONS_00010910-exon-sc0000118-1491911889:136419..136457Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1491911889:135821..135956TCONS_00010910-exon-sc0000118-1491911889:135821..135956Clytia hemisphaericaexon
TCONS_00010910-exon-sc0000118-1491911889:133054..133077TCONS_00010910-exon-sc0000118-1491911889:133054..133077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:133054..139778 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.586356	1.11351	1.24213	0	1.32208	0.496567	1.86339	0	0.104781	0.318139	0	0.369904	2.77299	2.31381	0	0	0	0	0	0	13.2015	0	0	0	0.162603	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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