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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010880 ID=TCONS_00010880|Name=TCONS_00010880|organism=Clytia hemisphaerica|type=transcript|length=3153bpRun BLAST on NCBI protein sequence of TCONS_00010880-protein >TCONS_00010880-protein ID=TCONS_00010880-protein|Name=TCONS_00010880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=719bp MSKTQDGGLNLASYLPKMSFDRQTTLLKLLILSIACILSFSTRLFSVLRFRun BLAST on NCBI transcript from alignment at sc0000118:142193..168623+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010880 ID=TCONS_00010880|Name=TCONS_00010880|organism=Clytia hemisphaerica|type=transcript|length=26431bp|location=Sequence derived from alignment at sc0000118:142193..168623+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000118:142193..168623+ >TCONS_00010880 ID=TCONS_00010880|Name=TCONS_00010880|organism=Clytia hemisphaerica|type=CDS|length=34560bp|location=Sequence derived from alignment at sc0000118:142193..168623+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010880 vs. Swiss-Prot (Human)
Match: STT3A (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=Homo sapiens GN=STT3A PE=1 SV=2) HSP 1 Score: 1187.56 bits (3071), Expect = 0.000e+0 Identity = 568/702 (80.91%), Postives = 645/702 (91.88%), Query Frame = 2
Query: 362 KMSFDRQTTLLKLLILSIACILSFSTRLFSVLRFESVIHEFDPYFNYRTTQYLASEGFYEFHNWFDDRAWYPLGRIIGGTIYPGLMVTSAILYHVMHFFHITIEVRNVCVFLAPLFSSFTALVTYQLTKELKDSGAGLIAASMIAIVPGYISRSVAGSYDNEGIAIFCMLLTYWLWIKSVKSGSLLWSTLCSLAYFYMVSSWGGYVFLINLIPMHVFALMLTGRFSHRIYVAYSTVYCIGTILSMQISFVGFQPVQTSEHMAALGIFGLCQIHAFVDYLRFRLSAKHFEILFKSLVXXXXXXXXXXXXXXXXXXKVAPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSFYFDLQMLVFMFPVGLYYCFSKLTDANIFIIIYGVTSIYFAGVMVRLMLVLAPVACILAGIGISSVLSTYMKNVELTSSQQPAQKHPNRKG-KQTDPSYPIKNEVATFMVGLVTFFLISYTFHCTWVTSEAYSSPSIVLSAKQNDGSRIIFDDFREAYYWLRQNTPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVGQAMASPEDKAYEIMRELDVNYVLVIFGGLTGYASDDINKFLWMVRIGGSTDTGKHIKEHDYYTPAGEFRIDKDGSPTLLNCLMYKMCFYRFGAVYTEQGKPTGYDRVRNAEIGNKEFELDVLEEAYTTEHWLVRIYKVKDLDNRG 2464
++S+++Q TLLKLLILS+A +LSFSTRLF+VLRFESVIHEFDPYFNYRTT++LA EGFY+FHNWFDDRAWYPLGRIIGGTIYPGLM+TSA +YHV+HFFHITI++RNVCVFLAPLFSSFT +VTY LTKELKD+GAGL+AA+MIA+VPGYISRSVAGSYDNEGIAIFCMLLTY++WIK+VK+GS+ W+ C+LAYFYMVSSWGGYVFLINLIP+HV LMLTGRFSHRIYVAY TVYC+GTILSMQISFVGFQPV +SEHMAA G+FGLCQIHAFVDYLR +L+ + FE+LF+S++ L + +GA+L +TGK++PWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSS+YFDLQ+LVFMFPVGLYYCFS L+DA IFII+YGVTS+YF+ VMVRLMLVLAPV CIL+GIG+S VLSTYMKN++++ P++K KQ D +YPIKNEVA+ M+ ++ FFLI+YTFH TWVTSEAYSSPSIVLSA+ DGSRIIFDDFREAYYWLR NTPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVGQAMAS E+KAYEIMRELDV+YVLVIFGGLTGY+SDDINKFLWMVRIGGSTDTGKHIKE+DYYTP GEFR+D++GSP LLNCLMYKMC+YRFG VYTE +P G+DRVRNAEIGNK+FELDVLEEAYTTEHWLVRIYKVKDLDNRG
Sbjct: 8 RLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSICWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDIS--------RPDKKSKKQQDSTYPIKNEVASGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAYEIMRELDVSYVLVIFGGLTGYSSDDINKFLWMVRIGGSTDTGKHIKENDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFGQVYTEAKRPPGFDRVRNAEIGNKDFELDVLEEAYTTEHWLVRIYKVKDLDNRG 701 The following BLAST results are available for this feature:
BLAST of TCONS_00010880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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