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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010879 ID=TCONS_00010879|Name=TCONS_00010879|organism=Clytia hemisphaerica|type=transcript|length=473bp
tcttattgtcATCACTTCACTGAAGCAAGattttaagaagattaaaaagc
gaaaaaacaCTGAAAATTCAAAAGatGTCAACAAAGATTAGTTGGCTTTT
CTTACTGGTGACGTTCTATGTCTTTACAGAGTCAGAGGGTCATTCGAAAG
AAGATACCAATGTCATGGGTGGGCTTTTGCAAGACCATTTACGAGAGAAG
ACCAAAAATCGAGCTAAGCGTTCCTTAACACTAACGGAAGTCCACCTCTG
TGATATGGGCAAATATCATACATCgctcaaaagatgtagaaacaGACTTG
ACAAGCTCTATATTCAATGTCGAATAACCGTCACAAGAGAAATGGAGTGT
GGTAGAGAGTACACCGGGAGTCGAGATTTAAAATGCAAAAGGCCGACGAC
CCAAAAGCATCAGATTCATTGTTGCGACCTAAGATGTGCATTTTAAATTG
ACATATTTTATGGTTTATATATC Run BLAST on NCBI protein sequence of TCONS_00010879-protein >TCONS_00010879-protein ID=TCONS_00010879-protein|Name=TCONS_00010879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MSTKISWLFLLVTFYVFTESEGHSKEDTNVMGGLLQDHLREKTKNRAKRS
LTLTEVHLCDMGKYHTSLKRCRNRLDKLYIQCRITVTREMECGREYTGSR
DLKCKRPTTQKHQIHCCDLRCAF Run BLAST on NCBI transcript from alignment at sc0000118:120780..122988+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010879 ID=TCONS_00010879|Name=TCONS_00010879|organism=Clytia hemisphaerica|type=transcript|length=2209bp|location=Sequence derived from alignment at sc0000118:120780..122988+ (Clytia hemisphaerica)
tcttattgtcATCACTTCACTGAAGCAAGattttaagaagattaaaaagc
gaaaaaacaCTGAAAATTCAAAAGGTATACTATTACTAAGAGAAATTGCA
CATACAGTAACATAAGCCTTAGTAGCTGGCTTCCTAGGCTACGTCATGTC
TTCCtttgtttcgagcgtaaaactcctactcttcgggatatgagcactgc
tcttgttttgaatattgaaattctccggataaaTCGAATGCACagtgagg
ttttaatgaaacaatagagagtttcgaatcCTAAGcaaatcagctgtgtt
ttaatcATCCTTTATtggaaatctctattgataaacatcttttgtgaaag
ttgtctattatgtttaaacctatatcaataagcaattcccggtgggggtt
actagtggccgcctatagcagtgcctatagaccaagagtaaggcctaaaa
gcctggagctgtctattgtgtagactactgACTTCCTACTTGTCTCTTGA
CCTTggaattgtttttagttttacCGAGTTTCGATAACCTTGGAAAGCTA
acttctcttttcttttctttttaagatGTCAACAAAGATTAGTTGGCTTT
TCTTACTGGTGACGTTCTATGTCTTTACAGAGTCAGAGGTTTGTTTGATA
TTAATATGATTCCAAATATGAGCCAGATTTTCTatccaaaagcaaaaaaa
atttaaccctCTAGTATGAAGATATATAATTGTGTAGCTTTCTTCGCATG
GACAAAAACAATCATACTTTGAGAGAAATCCACTGAACTTTTATATATCA
CTGGGCAAAGCTAAGAAAGCTTAAGAAATGTGGGGCTTAGAGGGTACAAA
ATACTGGAAACTCagtattttttcataaaataccaGCGTAATAGCGAAAA
AGTTCTCTAATACCGGTCAAAGATGTTCTGAAGAGTATCGGATATCCGGC
TTTTCAATACCGGAATACCCGGCAATACCGGATCTCGGAAGGCCCATAGA
ACTATCAAGATTGacgtactcttaggtgccaaataaatggccccccccgc
ttgttaatttttcgaaaattttccaacccccccggaccttattaggaccc
cccccccctttattaatttttaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNcccccccgtttatttggcacctaagagtaa
tcgCGAGAAGGAAGAAATAACATTCGCTTATATTTTTTCAGGGTCATTCG
AAAGAAGATACCAATGTCATGGGTGGGCTTTTGCAAGACCATTTACGAGG
TAAACTTTTTAACCTCTTCCACACATTGGTACATTCATCAAGAAAAAACA
AGACTAGAAAGGGAATCAAAAAAATATAGGATCAATCCTATCAAATTGCA
TGTGTATATTATTAGATAATacaatggagtctccataactcgaacacgca
gggaaacacaaaatgaaggaaatttcgagttatgattggtttataaggca
ttgtcaACTAAAAGacccataaaacttgttcgagttaaggaggttCGATT
TATGGAGACACCACTGTATATTCATTTTTAGAGAAGACCAAAAATCGAGC
TAAGCGTTCCTTAACACTAACGGAAGTCCACCTCTGTGATATGGGCAAAT
ATCATACATCgctcaaaagatgtagaaacaGACTTGACAAGCTCTATATT
CAATGTCGAATAACCGTCACAAGAGAAATGGAGTGTGGTAGAGAGTACAC
CGGGAGTCGAGATTTAAAATGCAAAAGGCCGACGACCCAAAAGCATCAGA
TTCATTGTTGCGACCTAAGATGTGCATTTTAAATTGACATATTTTATGGT
TTATATATC Coding sequence (CDS) from alignment at sc0000118:120780..122988+ >TCONS_00010879 ID=TCONS_00010879|Name=TCONS_00010879|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000118:120780..122988+ (Clytia hemisphaerica)
atGTCAACAAAGATTAGTTGGCTTTTCTTACTGGTGACGTTCTATGTCTT
TACAGAGTCAGAGGGTCATTCGAAAGAAGATACCAATGTCATGGGTGGGC
TTTTGCAAGACCATTTACGAGAGAAGACCAAAAATCGAGCTAAGCGTTCC
TTAACACTAACGGAAGTCCACCTCTGTGATATGGGCAAATATCATACATC
gctcaaaagatgtagaaacaGACTTGACAAGCTCTATATTCAATGTCGAA
TAACCGTCACAAGAGAAATGGAGTGTGGTAGAGAGTACACCGGGAGTCGA
GATTTAAAATGCAAAAGGCCGACGACCCAAAAGCATCAGATTCATTGTTG
CGACCTAAGATGTGCATTTTAAatGTCAACAAAGATTAGTTGGCTTTTCT
TACTGGTGACGTTCTATGTCTTTACAGAGTCAGAGGGTCATTCGAAAGAA
GATACCAATGTCATGGGTGGGCTTTTGCAAGACCATTTACGAGAGAAGAC
CAAAAATCGAGCTAAGCGTTCCTTAACACTAACGGAAGTCCACCTCTGTG
ATATGGGCAAATATCATACATCgctcaaaagatgtagaaacaGACTTGAC
AAGCTCTATATTCAATGTCGAATAACCGTCACAAGAGAAATGGAGTGTGG
TAGAGAGTACACCGGGAGTCGAGATTTAAAATGCAAAAGGCCGACGACCC
AAAAGCATCAGATTCATTGTTGCGACCTAAGATGTGCATTTTAAatGTCA
ACAAAGATTAGTTGGCTTTTCTTACTGGTGACGTTCTATGTCTTTACAGA
GTCAGAGGGTCATTCGAAAGAAGATACCAATGTCATGGGTGGGCTTTTGC
AAGACCATTTACGAGAGAAGACCAAAAATCGAGCTAAGCGTTCCTTAACA
CTAACGGAAGTCCACCTCTGTGATATGGGCAAATATCATACATCgctcaa
aagatgtagaaacaGACTTGACAAGCTCTATATTCAATGTCGAATAACCG
TCACAAGAGAAATGGAGTGTGGTAGAGAGTACACCGGGAGTCGAGATTTA
AAATGCAAAAGGCCGACGACCCAAAAGCATCAGATTCATTGTTGCGACCT
AAGATGTGCATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010879-exon-sc0000118-1491911889:120780..120853 | TCONS_00010879-exon-sc0000118-1491911889:120780..120853 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1510915933:120780..120853 | TCONS_00010879-exon-sc0000118-1510915933:120780..120853 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1575043694:120780..120853 | TCONS_00010879-exon-sc0000118-1575043694:120780..120853 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1491911889:121355..121417 | TCONS_00010879-exon-sc0000118-1491911889:121355..121417 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1510915933:121355..121417 | TCONS_00010879-exon-sc0000118-1510915933:121355..121417 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1575043694:121355..121417 | TCONS_00010879-exon-sc0000118-1575043694:121355..121417 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1491911889:122371..122428 | TCONS_00010879-exon-sc0000118-1491911889:122371..122428 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1510915933:122371..122428 | TCONS_00010879-exon-sc0000118-1510915933:122371..122428 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1575043694:122371..122428 | TCONS_00010879-exon-sc0000118-1575043694:122371..122428 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1491911889:122711..122988 | TCONS_00010879-exon-sc0000118-1491911889:122711..122988 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1510915933:122711..122988 | TCONS_00010879-exon-sc0000118-1510915933:122711..122988 | Clytia hemisphaerica | exon |
| TCONS_00010879-exon-sc0000118-1575043694:122711..122988 | TCONS_00010879-exon-sc0000118-1575043694:122711..122988 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:120780..122988 + |
Blast
The following BLAST results are available for this feature:
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