|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010875 ID=TCONS_00010875|Name=TCONS_00010875|organism=Clytia hemisphaerica|type=transcript|length=2292bp
Ttaatttacacttttttttataagcatacgggaaaatcgggtcgaggctc
catatgcttagcaaaatctcagATTTTTTagccttaatttatgcttattt
atgCTTAGGCTTtgctttgttgattttctttgggttcgtaaaaatttcGA
ATTTTAAGTCGTAACATTGATTCGGCTCAAAGAATTacagttttttttgt
aatttggcgCCGCAGACGAAAATATTTGGtctaagaaaggtcaaacagct
ttaaaagtaaccctaaaaaggtcagcgttttattttaaaaaagttgCACA
AAgtgtttttgcatttcagcttaTATTAGAGGTATGCTTTGCATTATGCC
TATTTTTTACCgaatttgagcctaagtatgcttataaacgttatgcttat
aaaaaagtgcatTCTTTTGAAGGTGGTTTCCTCATAGTAGCACAAAAAGA
GTTTAGACATTTTAAGAAGAATTTGTAAGAAGGGATGATGTTATCAAACA
ATAGTGGAGGCAGTATTATTGACGATGATATATTTTGCGATGAATTCGAA
CCATCGACAACTTGCACCTATATATTCTCGGTGGTGTTGAGTTTGATTGC
TTTGATCGCATGCATCGGAAACTTGTTGACGATCATTGTGGTTATATTGG
ATCCTTTGAAATGTTTGAGATCTCCTTTCACATCATTCGTGGTCAATCTC
TCCATAGCTGATGCTCTTCAAGGAGCTATTGCCGTTCCATTTGTGGTTTA
TCATCTGTTAGATCATGAAAAAGGACTTCGGTTGACATCGAAAACAGTAC
ATTGTCTGACATGCATTTCCCTTCTCAGTGTTTTCTTCAGTACAGTCATC
ATCTCAGTTGACCGCTATATCGGTATCACGCGGCCGCTCAAGTATCGCGT
ACACTTGTCGCACGGTCGGTGTTTAAAAATCGCATCCGCAATATGGGTTA
TATCGATTGGATCAGGTTTTTTGATCACGTATCGGCCCTATGAAACGATA
TCGTTCATGGTTTACAATTATTTTATGCTTGTAACTGGCATTATTGTTAT
GTTTATAACTTTCGTTCTCATTTACCGATTCTTGAAACAAAACGAACGAC
AATTTTGCGAGAAACTACGAAGCGCATCGATAACATCGACGTCTTCTCGA
TACAATGCAGAAAAGCGAGTCACAATTGTTTTGTTAATCGTGTTATCGAT
TTTCATGGGAACGTATATTCCCGCACTCGTTATGTTGAATTTGTCGCAGT
ATTGTTTCGAATGTAGCTGTGAAACTCGATACGATTTATACGTTATAAGA
TACATTCTACTCGTCTCGAACAGCGCGATCAACCCGTTTGTTTATTCGAT
ACGAATGAAAGATTTTCGAAACTCGATTCAATCTTTATTTGTGAGGAAAA
CGAATCGAAAAACTCGATATCGATTGATAACCGATACATCATCAGACGGT
GTATCGAATTTGGAAAAATCGGCTGCTATGTGATTTAGATGAAAGGTTAC
AAATGCACGTAGAGTTGACTCCATGACCAAGAATTTgcttcgaattacag
aaagcattttatactaatttctagctgaaGGACCAATATCTTAGTTCGAA
TTATCGAAAGATTTGagtagtagaggttcgaattagagagagttgattgT
ATCAACCCTTAGCGGAGTGGTTGGTTTCAGGGACTGGTAACGAATTTACa
aggaaatgacgtcaaaattcttCGTTTTATGAGAATGTTAATACAATGAC
TTAATACATATTTTGATGTCATTCCTGGTAGACTTGAATTCAGTCTTATC
CATtatagatatcttatataaaacactagatagagctgctctgtatttcc
caagcaacggtaggtgaagcaaaataatccgccatctttgctgaaagtag
ctCACAATAGGTCACAGTTTGGTACCGGTACAATTTGTtcaaccaagcaa
aaaaaaccTGAATGGCGCGAGGCAACGAGGCGAAAAATAGGCTTGATcga
tcaaattgccggcaccgaactatggtctacttatcaaagatggcggatta
tttAGATTCAAATAGGGacggagtagctctatctagtgtcttatataaga
tatctgtgagtCTTATCACGTTTTAAAGGATGGTAGATATATACTGAAGA
CAAATACTGATGAGACACAGATGAAATgcacactttttttaaaagaatat
cttctataagaatatcagggtgaaaattggccaaatcgtaagaataccct
aagaattcCCTTtagggtgagtttcacagaatttgataagaa Run BLAST on NCBI transcript from alignment at sc0000118:80773..85257+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010875 ID=TCONS_00010875|Name=TCONS_00010875|organism=Clytia hemisphaerica|type=transcript|length=4485bp|location=Sequence derived from alignment at sc0000118:80773..85257+ (Clytia hemisphaerica)
Ttaatttacacttttttttataagcatacgggaaaatcgggtcgaggctc
catatgcttagcaaaatctcagATTTTTTagccttaatttatgcttattt
atgCTTAGGCTTtgctttgttgattttctttgggttcgtaaaaatttcGA
ATTTTAAGTCGTAACATTGATTCGGCTCAAAGAATTacagttttttttgt
aatttggcgCCGCAGACGAAAATATTTGGtctaagaaaggtcaaacagct
ttaaaagtaaccctaaaaaggtcagcgttttattttaaaaaagttgCACA
AAgtgtttttgcatttcagcttaTATTAGAGGTATGCTTTGCATTATGCC
TATTTTTTACCgaatttgagcctaagtatgcttataaacgttatgcttat
aaaaaagtgcatTCTTTTGAAGGTGGTTTCCTCATAGTAGCACAAAAAGA
GTTTAGACATTTTAAGAAGAATTTGTAAGAAGGGATGATGTTATCAAACA
ATAGTGGAGGCAGTATTATTGACGATGATATATTTTGCGATGAATTCGAA
CCATCGACAACTTGCACCTATATATTCTCGGTGGTGTTGAGTTTGATTGC
TTTGATCGCATGCATCGGTGAGTactttatttttcagattttgattTACA
CACAACATTTTGAATAGAAATTAGACAAGTTGGGACAAGACTTTACTCTC
AGGTGCccaataaagggggggggggggttggaaaatttgcCCTAATTGGA
TCTAATTGTCAAGCGGGGTTGTTGGAGATTGTACCTCTAAATACAACTCA
AAACAAGGTAATTAGAGACAAAATAGCAAGAGGGTATAATAAGGGCTTCt
tcttttgacagctgaaaatatttttaaaaaaatccttataataaggtcgg
ggggggggggttggaaaatttgcCCTAATTGGATCTAATTGTCAAGCGGG
GTTGTTGGAGATTGTACCTCTAAATACAACTCAAAACAAGGTAATTAGAG
ACAAAATAGCAAGAGGGTATAATAAGGGCTTCttcttttgacagctgaaa
atatttttaaaaaaatccttataataaggtcggggggggggggttggaaa
atttgcCCTAATTGGATCTAATTGTCAAGCGGGGTTGTTGGAGATTGTAC
CTCTAAATACAACTCAAAACAAGGTAATTAGAGACAAAATAGCAAGAGGG
TATAATAAGGGCTTCttcttttgacagctgaaaatatttttaaaaaaatc
cttataataaggtcggggggggggggttggaaaatttgcCCTAATTGGAT
CTAATTGTCAAGCGGGGTTGTTGGAGATTGTACCTCTAAATACAACTCAA
AACAAGGTAATTAGAGACAAAATAGCAAGAGGGTATAATAAGGGCTTCtt
cttttgacagctgaaaatatttttaaaaaaatccttataataaggtcggg
gggggggggttggaaaatttgcCCTAATTGGATCTAATTGTCAAGCGGGG
TTGTTGGAGATTGTACCTCTAAATACAACTCAAAACAAGGTAATTAGAGA
CAAAATAGCAAGAGGGTATAATAAGGGCTTCttcttttgacagctgaaaa
tatttttaaaaaaatccttataataaggtcggggggggggggttgagaAA
AACCGAAAATTTAACGGGGAGGGGCGTTAGGCACTTGAGGAGGGTAGCCA
CTTTTGATTCAACCTTGATTGAAGGTTTCCCTTTTTTACAAATACATCCT
GATTTTATATTATAGGAAACTTGTTGACGATCATTGTGGTTATATTGGAT
CCTTTGAAATGTTTGAGATCTCCTTTCACATCATTCGTGGTCAATCTCTC
CATAGCTGATGCTCTTCAAGGAGCTATTGCCGTTCCATTTGTGGTTTATC
ATCTGTTAGATCATGAAAAAGGTGTGTTTTCATTTTGGGATCTTATTACT
TCAAAGGTTACATTTGAGCTAACTTTTGATCCTtttatactttaggcgta
caaactttcgcggcagaaactttcgcgattttcgcgaattttggtccttt
ttttcgcgaaagtaaatgtcttaaaaaattctaggaaggaccattcgcga
aagtttatgctcgcgaaaaattcttgacaaaacagaaaatctgtaaaacc
tcaaactttgaataaaatgtaactgttacggcactttttagcctgctaaa
agactaataagtcaaatgacaaatgtttcaagccaatccaagaagtatct
gtccctctaagccattttttcatgtgaaaattatcaattttacgtcttga
ttcgcgaaagtttatgctcgcgaaaaagatttttttcgttaaattcgcga
aagtaaatgtcgtgaatttcgcgatttttcgtcctcgcgaaagtttctgt
tcgcgaaagtttgtacgcctaaagtaacaTGTAGATCAACTTCATTACGG
CAGAAAGTAATATCCCTATGGTCAGATAATTCTTATGACTCAGCCTAGGC
TgttggcatccactaacggattcttGCTCCAAAAATACTACCAtcggttt
tgtagaggtttgcgattcagactaggctCATGCATGAATTAATAAAAACT
GATGTTTAGCATAATAATCTCTAGTCTGAATACTATAAAGTCATACTAAA
TTTATACATACAAATTATGTATGACAAACAACCCTCTACGTCTACGTCCA
AGTCTAACTCTAAGCAGCGACAGCGATTGGGTATATTGGAATAACAACtg
actgatttttgccaatttctcaaaTGCAAGCCTAGTCCGCAGTAAAGTCT
CTGTGAACAAATTTTGAGTAACTTTCAgaaatcagaaaagctgttacATT
TTACCtaattaataattttctttttctttccttttgacAGGACTTCGGTT
GACATCGAAGNTGTTACATAATGTAATAATGtaattaatatttttcttta
tctttccTTTTGACAGGACTTCGGTTGACATCGAAAACAGTACATTGTCT
GACATGCATTTCCCTTCTCAGTGTTTTCTTCAGTACAGTCATCATCTCAG
TTGACCGCTATATCGGTATCACGCGGCCGCTCAAGTATCGCGTACACTTG
TCGCACGGTCGGTGTTTAAAAATCGCATCCGCAATATGGGTTATATCGAT
TGGATCAGGTTTTTTGATCACGTATCGGCCCTATGAAACGATATCGTTCA
TGGTTTACAATTATTTTATGCTTGTAACTGGCATTATTGTTATGTTTATA
ACTTTCGTTCTCATTTACCGATTCTTGAAACAAAACGAACGACAATTTTG
CGAGAAACTACGAAGCGCATCGATAACATCGACGTCTTCTCGATACAATG
CAGAAAAGCGAGTCACAATTGTTTTGTTAATCGTGTTATCGATTTTCATG
GGAACGTATATTCCCGCACTCGTTATGTTGAATTTGTCGCAGTATTGTTT
CGAATGTAGCTGTGAAACTCGATACGATTTATACGTTATAAGATACATTC
TACTCGTCTCGAACAGCGCGATCAACCCGTTTGTTTATTCGATACGAATG
AAAGATTTTCGAAACTCGATTCAATCTTTATTTGTGAGGAAAACGAATCG
AAAAACTCGATATCGATTGATAACCGATACATCATCAGACGGTGTATCGA
ATTTGGAAAAATCGGCTGCTATGTGATTTAGATGAAAGGTTACAAATGCA
CGTAGAGTTGACTCCATGACCAAGAATTTgcttcgaattacagaaagcat
tttatactaatttctagctgaaGGACCAATATCTTAGTTCGAATTATCGA
AAGATTTGagtagtagaggttcgaattagagagagttgattgTATCAACC
CTTAGCGGAGTGGTTGGTTTCAGGGACTGGTAACGAATTTACaaggaaat
gacgtcaaaattcttCGTTTTATGAGAATGTTAATACAATGACTTAATAC
ATATTTTGATGTCATTCCTGGTAGACTTGAATTCAGTCTTATCCATtata
gatatcttatataaaacactagatagagctgctctgtatttcccaagcaa
cggtaggtgaagcaaaataatccgccatctttgctgaaagtagctCACAA
TAGGTCACAGTTTGGTACCGGTACAATTTGTtcaaccaagcaaaaaaaac
cTGAATGGCGCGAGGCAACGAGGCGAAAAATAGGCTTGATcgatcaaatt
gccggcaccgaactatggtctacttatcaaagatggcggattatttAGAT
TCAAATAGGGacggagtagctctatctagtgtcttatataagatatctgt
gagtCTTATCACGTTTTAAAGGATGGTAGATATATACTGAAGACAAATAC
TGATGAGACACAGATGAAATgcacactttttttaaaagaatatcttctat
aagaatatcagggtgaaaattggccaaatcgtaagaataccctaagaatt
cCCTTtagggtgagtttcacagaatttgataagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010875-exon-sc0000118-1491911889:80773..81389 | TCONS_00010875-exon-sc0000118-1491911889:80773..81389 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1510915933:80773..81389 | TCONS_00010875-exon-sc0000118-1510915933:80773..81389 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1575043694:80773..81389 | TCONS_00010875-exon-sc0000118-1575043694:80773..81389 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1491911889:82538..82693 | TCONS_00010875-exon-sc0000118-1491911889:82538..82693 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1510915933:82538..82693 | TCONS_00010875-exon-sc0000118-1510915933:82538..82693 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1575043694:82538..82693 | TCONS_00010875-exon-sc0000118-1575043694:82538..82693 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1491911889:83739..85257 | TCONS_00010875-exon-sc0000118-1491911889:83739..85257 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1510915933:83739..85257 | TCONS_00010875-exon-sc0000118-1510915933:83739..85257 | Clytia hemisphaerica | exon |
| TCONS_00010875-exon-sc0000118-1575043694:83739..85257 | TCONS_00010875-exon-sc0000118-1575043694:83739..85257 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118 | supercontig | sc0000118:80773..85257 + |
Blast
BLAST of TCONS_00010875 vs. Swiss-Prot (Human)
Match: AA2AR (Adenosine receptor A2a OS=Homo sapiens GN=ADORA2A PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 7.163e-16 Identity = 83/334 (24.85%), Postives = 149/334 (44.61%), Query Frame = 2
Query: 596 IALIACIGNLLTIIVVILDPLKCLRSPFTSFVVNLSIADALQGAIAVPFVVYHLLDHEKGLRLTSKTVHCLTCISLL-----------SVFFSTVIISVDRYIGITRPLKYRVHLSHGRCLKIASAIWVISIGSGF--LITY----RPYE---------------------TISFMVY-NYFMLVTGIIVMFITFVLIYRFLKQNERQFCEKLRSASITSTSSRYNAEKRVTIV--LLIVLSIFMGTYIPALVMLNLSQYCFECSCETRYDLYVIRYILLVSNSAINPFVYSIRMKDFRNS----IQSLFVRKTN----RKTRYRLITDTSSDG 1450
IA++A +GN+L V L+ L++ FVV+L+ AD G +A+PF + T T C C L S FS + I++DRYI I PL+Y ++ R I + WV+S G ++ + +P E +++MVY N+F V ++ + + + R RQ +++ S + +R +K V L I++ +F ++P ++ + +C +CS + +Y + +L +NS +NPF+Y+ R+++FR + I+S +R+ T R++ SDG
Sbjct: 16 IAVLAILGNVLVCWAVWLN--SNLQNVTNYFVVSLAAADIAVGVLAIPFAI------------TISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACV--LVPLLLMLGVYLRIFLAARRQL-KQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMY-LAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAGTSARVLAAHGSDG 331
The following BLAST results are available for this feature:
|
