XLOC_006108 (gene) - C. hemisphaerica

Overview
NameXLOC_006108
Unique NameXLOC_006108
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000118:80773..85257+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006108 ID=XLOC_006108|Name=XLOC_006108|organism=Clytia hemisphaerica|type=gene|length=4485bp|location=Sequence derived from alignment at sc0000118:80773..85257+ (Clytia hemisphaerica)
Ttaatttacacttttttttataagcatacgggaaaatcgggtcgaggctc catatgcttagcaaaatctcagATTTTTTagccttaatttatgcttattt atgCTTAGGCTTtgctttgttgattttctttgggttcgtaaaaatttcGA ATTTTAAGTCGTAACATTGATTCGGCTCAAAGAATTacagttttttttgt aatttggcgCCGCAGACGAAAATATTTGGtctaagaaaggtcaaacagct ttaaaagtaaccctaaaaaggtcagcgttttattttaaaaaagttgCACA AAgtgtttttgcatttcagcttaTATTAGAGGTATGCTTTGCATTATGCC TATTTTTTACCgaatttgagcctaagtatgcttataaacgttatgcttat aaaaaagtgcatTCTTTTGAAGGTGGTTTCCTCATAGTAGCACAAAAAGA GTTTAGACATTTTAAGAAGAATTTGTAAGAAGGGATGATGTTATCAAACA ATAGTGGAGGCAGTATTATTGACGATGATATATTTTGCGATGAATTCGAA CCATCGACAACTTGCACCTATATATTCTCGGTGGTGTTGAGTTTGATTGC TTTGATCGCATGCATCGGTGAGTactttatttttcagattttgattTACA CACAACATTTTGAATAGAAATTAGACAAGTTGGGACAAGACTTTACTCTC AGGTGCccaataaagggggggggggggttggaaaatttgcCCTAATTGGA TCTAATTGTCAAGCGGGGTTGTTGGAGATTGTACCTCTAAATACAACTCA AAACAAGGTAATTAGAGACAAAATAGCAAGAGGGTATAATAAGGGCTTCt tcttttgacagctgaaaatatttttaaaaaaatccttataataaggtcgg ggggggggggttggaaaatttgcCCTAATTGGATCTAATTGTCAAGCGGG GTTGTTGGAGATTGTACCTCTAAATACAACTCAAAACAAGGTAATTAGAG ACAAAATAGCAAGAGGGTATAATAAGGGCTTCttcttttgacagctgaaa atatttttaaaaaaatccttataataaggtcggggggggggggttggaaa atttgcCCTAATTGGATCTAATTGTCAAGCGGGGTTGTTGGAGATTGTAC CTCTAAATACAACTCAAAACAAGGTAATTAGAGACAAAATAGCAAGAGGG TATAATAAGGGCTTCttcttttgacagctgaaaatatttttaaaaaaatc cttataataaggtcggggggggggggttggaaaatttgcCCTAATTGGAT CTAATTGTCAAGCGGGGTTGTTGGAGATTGTACCTCTAAATACAACTCAA AACAAGGTAATTAGAGACAAAATAGCAAGAGGGTATAATAAGGGCTTCtt cttttgacagctgaaaatatttttaaaaaaatccttataataaggtcggg gggggggggttggaaaatttgcCCTAATTGGATCTAATTGTCAAGCGGGG TTGTTGGAGATTGTACCTCTAAATACAACTCAAAACAAGGTAATTAGAGA CAAAATAGCAAGAGGGTATAATAAGGGCTTCttcttttgacagctgaaaa tatttttaaaaaaatccttataataaggtcggggggggggggttgagaAA AACCGAAAATTTAACGGGGAGGGGCGTTAGGCACTTGAGGAGGGTAGCCA CTTTTGATTCAACCTTGATTGAAGGTTTCCCTTTTTTACAAATACATCCT GATTTTATATTATAGGAAACTTGTTGACGATCATTGTGGTTATATTGGAT CCTTTGAAATGTTTGAGATCTCCTTTCACATCATTCGTGGTCAATCTCTC CATAGCTGATGCTCTTCAAGGAGCTATTGCCGTTCCATTTGTGGTTTATC ATCTGTTAGATCATGAAAAAGGTGTGTTTTCATTTTGGGATCTTATTACT TCAAAGGTTACATTTGAGCTAACTTTTGATCCTtttatactttaggcgta caaactttcgcggcagaaactttcgcgattttcgcgaattttggtccttt ttttcgcgaaagtaaatgtcttaaaaaattctaggaaggaccattcgcga aagtttatgctcgcgaaaaattcttgacaaaacagaaaatctgtaaaacc tcaaactttgaataaaatgtaactgttacggcactttttagcctgctaaa agactaataagtcaaatgacaaatgtttcaagccaatccaagaagtatct gtccctctaagccattttttcatgtgaaaattatcaattttacgtcttga ttcgcgaaagtttatgctcgcgaaaaagatttttttcgttaaattcgcga aagtaaatgtcgtgaatttcgcgatttttcgtcctcgcgaaagtttctgt tcgcgaaagtttgtacgcctaaagtaacaTGTAGATCAACTTCATTACGG CAGAAAGTAATATCCCTATGGTCAGATAATTCTTATGACTCAGCCTAGGC TgttggcatccactaacggattcttGCTCCAAAAATACTACCAtcggttt tgtagaggtttgcgattcagactaggctCATGCATGAATTAATAAAAACT GATGTTTAGCATAATAATCTCTAGTCTGAATACTATAAAGTCATACTAAA TTTATACATACAAATTATGTATGACAAACAACCCTCTACGTCTACGTCCA AGTCTAACTCTAAGCAGCGACAGCGATTGGGTATATTGGAATAACAACtg actgatttttgccaatttctcaaaTGCAAGCCTAGTCCGCAGTAAAGTCT CTGTGAACAAATTTTGAGTAACTTTCAgaaatcagaaaagctgttacATT TTACCtaattaataattttctttttctttccttttgacAGGACTTCGGTT GACATCGAAGNTGTTACATAATGTAATAATGtaattaatatttttcttta tctttccTTTTGACAGGACTTCGGTTGACATCGAAAACAGTACATTGTCT GACATGCATTTCCCTTCTCAGTGTTTTCTTCAGTACAGTCATCATCTCAG TTGACCGCTATATCGGTATCACGCGGCCGCTCAAGTATCGCGTACACTTG TCGCACGGTCGGTGTTTAAAAATCGCATCCGCAATATGGGTTATATCGAT TGGATCAGGTTTTTTGATCACGTATCGGCCCTATGAAACGATATCGTTCA TGGTTTACAATTATTTTATGCTTGTAACTGGCATTATTGTTATGTTTATA ACTTTCGTTCTCATTTACCGATTCTTGAAACAAAACGAACGACAATTTTG CGAGAAACTACGAAGCGCATCGATAACATCGACGTCTTCTCGATACAATG CAGAAAAGCGAGTCACAATTGTTTTGTTAATCGTGTTATCGATTTTCATG GGAACGTATATTCCCGCACTCGTTATGTTGAATTTGTCGCAGTATTGTTT CGAATGTAGCTGTGAAACTCGATACGATTTATACGTTATAAGATACATTC TACTCGTCTCGAACAGCGCGATCAACCCGTTTGTTTATTCGATACGAATG AAAGATTTTCGAAACTCGATTCAATCTTTATTTGTGAGGAAAACGAATCG AAAAACTCGATATCGATTGATAACCGATACATCATCAGACGGTGTATCGA ATTTGGAAAAATCGGCTGCTATGTGATTTAGATGAAAGGTTACAAATGCA CGTAGAGTTGACTCCATGACCAAGAATTTgcttcgaattacagaaagcat tttatactaatttctagctgaaGGACCAATATCTTAGTTCGAATTATCGA AAGATTTGagtagtagaggttcgaattagagagagttgattgTATCAACC CTTAGCGGAGTGGTTGGTTTCAGGGACTGGTAACGAATTTACaaggaaat gacgtcaaaattcttCGTTTTATGAGAATGTTAATACAATGACTTAATAC ATATTTTGATGTCATTCCTGGTAGACTTGAATTCAGTCTTATCCATtata gatatcttatataaaacactagatagagctgctctgtatttcccaagcaa cggtaggtgaagcaaaataatccgccatctttgctgaaagtagctCACAA TAGGTCACAGTTTGGTACCGGTACAATTTGTtcaaccaagcaaaaaaaac cTGAATGGCGCGAGGCAACGAGGCGAAAAATAGGCTTGATcgatcaaatt gccggcaccgaactatggtctacttatcaaagatggcggattatttAGAT TCAAATAGGGacggagtagctctatctagtgtcttatataagatatctgt gagtCTTATCACGTTTTAAAGGATGGTAGATATATACTGAAGACAAATAC TGATGAGACACAGATGAAATgcacactttttttaaaagaatatcttctat aagaatatcagggtgaaaattggccaaatcgtaagaataccctaagaatt cCCTTtagggtgagtttcacagaatttgataagaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010875TCONS_00010875Clytia hemisphaericatranscript
TCONS_00010876TCONS_00010876Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010876-proteinTCONS_00010876-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:80773..85257 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
OR2K2PREDICTED: olfactory receptor 2K2 isoform X1 Homo Sapiens
OR2T34olfactory receptor 2T34 Homo Sapiens
OR2T10olfactory receptor 2T10 Homo Sapiens
OR2T11olfactory receptor 2T11 Homo Sapiens
OR6S1olfactory receptor 6S1 Homo Sapiens
OR1N2olfactory receptor 1N2 Homo Sapiens
OR5D14olfactory receptor 5D14 Homo Sapiens
OR1J4olfactory receptor 1J4 Homo Sapiens
OR1J2PREDICTED: olfactory receptor 1J2 isoform X1 Homo Sapiens
OR2L13PREDICTED: olfactory receptor 2L13 isoform X1 Homo Sapiens
OR2T29olfactory receptor 2T29 Homo Sapiens
OR1E1olfactory receptor 1E1 Homo Sapiens
OR1G1PREDICTED: olfactory receptor 1G1 isoform X1 Homo Sapiens
OR4C6PREDICTED: olfactory receptor 4C6 isoform X1 Homo Sapiens
OR5D16olfactory receptor 5D16 Homo Sapiens
OR6B1olfactory receptor 6B1 Homo Sapiens
OR13C5olfactory receptor 13C5 Homo Sapiens
OR4E2olfactory receptor 4E2 Homo Sapiens
OR14I1PREDICTED: olfactory receptor 14I1 isoform X2 Homo Sapiens
OR7A10olfactory receptor 7A10 Homo Sapiens
OR2T6olfactory receptor 2T6 Homo Sapiens
OR2T4olfactory receptor 2T4 Homo Sapiens
OR2T5olfactory receptor 2T5 Homo Sapiens
OR2T3olfactory receptor 2T3 Homo Sapiens
OR5D18olfactory receptor 5D18 Homo Sapiens
OR7D2olfactory receptor 7D2 Homo Sapiens
OR4N5olfactory receptor 4N5 Homo Sapiens
OR2B11olfactory receptor 2B11 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26 0.15 0.96 1.35 0.34 0.27 0.42 0.42 0.24 0.23 0.46 0.41 1.9 1.23 1.02 1.38 0.91 0.8 1.2 1.39 0.71 0.92 0.63 0.44 6.47 3.53 0.52 0.3 0.36 0.54