TCONS_00010870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010870
Unique NameTCONS_00010870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010870 ID=TCONS_00010870|Name=TCONS_00010870|organism=Clytia hemisphaerica|type=transcript|length=5745bp
CGACACGCAATTATAAACAACGTTAAATCAAGCCACAAAACGACGGCTTC
AAAGCGACACACGATCACGTCAAAACAACATAGAACAGTCACAAAATACC
ATCCACTACGATCACAACATAACGACAAACGTTCCAAAACGCGACAACAA
AAACACAAACACTTTACACGACATACAATCACTCATCCACAACAGGCACA
ACACGTGTCAACAAAAAAAGACAGTCTCACAACACACCAAAAAATCACTA
AACCAACAAATTTCACCAAAGATGAAAACCATAAAAAAGCGGAAGTCTTT
TTACTGGATGCATCGAAAATTGATGAAGATGGGGTCGTCAGAGGTCGAGA
CACAACCTCCAGTGCTGTCGGTAACATTATAGCTCCTGAAGAAGATGTGT
TAGCAAGtaagaaagaaaatatcaatAACCTTCTTACCAATGCTGATGGT
AAGAATCCAGAATCATTGGAGCAGAATCTGATGATGAACCAAGATTCAGC
TAAAGGAAGCATTGTTCCGATGTCTGTATCCTTTGGTGGTTTCAAATCAC
TCGACGATGCTGTGTTGCAATCGAATATACCAGCTGAAGTTGATTATCTG
AAAGGGAGTTATAATGGGAACAAGGATTTCATGAAGAGCTTGCAGACGCC
AACAGATGGACCTGAAGAGCAAGCAGTTAGTCGACAATTAGCAGGGGTCG
AAGGACAGAAGACAGAATCGTTGTCCAAATTTATAGAGAGTAATGATCCA
CAGGGGGAATTATCAAAGATCGGTGATTCCTTGACGATGTCAAAAATTGA
ACCAGGAGAGCTTCAAACTGGGGAATCTTCAAAGATTAGTGATTCCTTAA
CCACATCTAAACTTGATTCAGGTGACCCTTCAAAAATGATGGATTCTATT
TTAGAACCAATCAAGACATCAGCGAAATATTCACCAACAAGTTTTATGAA
TACAGAAACAGCCATTAAAGGTGACCCTGCCTTCTCACAAGCCGTAACCC
AAGACaatttactggacaactcagtCAAAGAAGCTATAAATgcagaaatg
aaaaaagatattgaTCTAGCCACGGGTGAAGAGAAACAAACGGATACACG
TTCGTCTGCTTATGAATATAAACCCAAggaatcttctttttcaaatgtCA
AGGAATTCCCTTCTTCTATGGTGGGTGATATCGCGACTGTAGCGGAGGCG
GTTGATAAAGCAGCCGTCAGTCGCTCACATAAAATGAAATATAAGAAACA
GCGCGAGAAAGTTGGGAAGTCCAAGAAACTAGTCAAACAGAGGTCTTCGA
ATAAACATCATAAAACATCGACACGTTCGAAATCCTTACACTCGCTGCCG
ACAGTTCCAAAAGTCAAAACAACAGCTCAACAAAAAGTAGAGGAATCCCC
GAAACAAATGACAGGGGAAGCACCATCTATAGAAGAGCAGCATGTGATTC
CCCAATTATCCGATTCCCTGGACGTCAATACACATCCTTCGGCACTGACC
GCGAGTGAACAGAATCTGATCGCGTCTATCGACCGCGCGGCCCGAAAGAA
GGACGTGGCGAACGAAATGGTTAACCGTATCATGATGCCGACTAAAAGTG
ATCCTTTCTCAGACCAAGCTCTCACTCCACCTGAACAACTCCTCGACATG
CTCTCCAATGGAAAATTCAACGACCCCTTACCTGAAAGCGTACTCGACCG
CTTATCCAATCTTGATCCGAACAAAGCTATGTTACCTGATTCAAACGCTT
TCATgcaaccaaaacaaaaaagccCTACTTCAGGTTTAATGCAAGTTGGG
TCTGAATTACTACCAGTCAAAAGCGTCGCTTTAAACCAGCCGCAAGTTAC
ACCACAACCGCTTCTAGACACAAGAGAGTTAGCGAGAGCTGAgaaacaaa
tgaaaacaaaccCATATTACCTAGCCCAGAATAACATGCTGTTAGACGCA
AACAATTTCAAAAGCATGCAAGATCTTTCTAATATTGGAGAAGCGATGTT
TTCTAAGAACGTTATCGACTTAAAACAGCCGATGATGATGGGCGGAAACG
AATTGGCTGAGGGTGGTTTTAATGATAACACCCTTTCTTTCGGGGCGTCA
TTAGGTGAACCGTCTTCCACAAGTAGCACGGCAGTTGCAAGAAACCAGAT
GAATAATAATAAAAACCTTCAATCGGTTACCGGTAAAACAAGATGTCCCA
ATTGCGTCACCGGTGGACAATATGGTAGCCAAGCTGCAGGATTTTCTCCA
CAGCGTTTACTACACAAAGAATCCCACTTTGTACATAATGATATCGATCC
TTTAGTGTTGGAGCAGATCCGACATCTACCGACAGTGAATATGAAGAAAT
TGATAGAAACACACAGGAAGAAGACTGGACACAACAAACACAAAGGGAAA
ACAACTTTCCAAGATGCAATGTCTGATACGAGTGTCTCACATAACACGGA
CGATGAATTCGTACCTGAGAAAATTGTCACTCTTCCTGAAGAGCACGTCA
ATCACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGAATGGAGGTGTT
TGTACAGCGCATCCAGATAAATATTATTGCAGTTGTTTGCCTGGTTGGAT
CGGAACCAATTGTGAACGACGGAACGCGTGTTTTCCGAATCCATGTCATT
ACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGTGCAAAGCT
GGATTCAAAGGGAATCTCTGTAATGTACTGGATCATTGCCATCCGAATCC
ATGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGTACAATGTG
AATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAATGGAATCAAAATGC
GAGCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGAGAATTTGTGGA
TCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGTTAATTGTGAAG
ATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGAAACAAGTT
GGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGTGACATCCG
TGATGTTTTCACATACCGGTCTACGGATCAATACGGAAATCCGTATTCGG
AAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAAACCCAGGC
GCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAATGAAGCTCC
AGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGGTGACGTCA
TCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTACATCAACA
AGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGATGACCGGTA
TCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCATGAATACA
AACATAAATCATTAAGTCATAACCATCTCCATGTGGGTGAATCAGTGGGC
GTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAATGATGAAGAGGC
GGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAATAAAGGAGA
ATTCGCATCAGCAACATGACCACGATGAACACATTTCAAACGAAAAACAC
GTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGATTTACCACACCA
CGCTCGTCAACATGAACAATCgagcaaaacgttcgaaacaaaacaaacta
tCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAGATGCAGAA
ACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGCCCGAGTAG
TGATGATGATAATAAAAGCAATATCAAAACAATAGGGGACATGTTAAAAA
TGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTAAAAGTGCT
AATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCACAAGTAGA
AAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGGACAAATCG
GGAACGCAACACAATCCCCGTTTTCAgaaatgaaacattttatgCAGAAT
TTATATAATTTAACCAATAAAATCACAAACATTAACAACGCCAAATCGGG
TGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGGCGCTACTG
ACGATCTATACAAACATTTTACAGACCATCAGAAAAATGCTTATACAAGC
TGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAATCCGGGAAAACC
GGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTGTCCGAAAT
TCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGATGTTGTAAA
CTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAAAAGCAAGA
agcacatttaaaaaatacgAAACCGTCTGGACTTTTGTTGCCCGATGAAG
TCGAAGAAAACGTACAGACGACAAAACGACAACATAATAACGACAATGAC
GTCACTTTAACACGACAACCGACGGCGACAAATAACGAGACTTTAAACGA
CAATTGTCGGAAATGTAACGAGAATGCAGACTGTGTACAGGGGAGTGAAC
AGAAAGGTTGTGTCTGTAAACCGGGGTTCAGCGGTGACGGAAAAGTGTGC
ACAGTGGACACGTGCATGTTATGTCATTTGGACGCTGAATGTGAGGGTGA
AAGATGtttctgtaaaaataatttcgaaGGAGATGGATACGAGTGTCGAC
CTTTGCACGCCTCGAAACGGAACCAATGTTCAGATTGTCATTTAAAGGCT
GATTGTACATCAGGAGAATGTGTTTGCAGTATGGGTTACTATGGAAACGG
CAAAAATTGTTGGCCCATACCCATCATTTGAATATGAAAAAGTAGATTCT
TCTGGGCTACAGTTTTATCTAAATCTTCAAAACCATGATATGCNGATAGG
AACTAACGCTCACTGGATATATGAAAAAGTTGATTCTTCTGGGCTACAGT
TTTATGTGAATCTTCAAAACCATATTGGCTACTTCAAAATATACAGAATT
GGGATTAACGCCGTCTGGATTCTATCTCATCTGCGCGCCAGGATATTCGC
TCCATTTATCACCACCAAAACATCTGTTTACAGTAAAACTGCTTGTTGTT
AGAATCGCTTAGGTGATGTCTAAGAGTCTAGGGCAAATTCATGTAATCTG
AGACAAAAAACAGAAGCATTTTGTAAACCGCGTCCCCGTGTGTctcaggc
tttatttacgttgaTGATTGACGCCAGggaattatctagcgctatcagta
agaataaaaaagctgataatgcacagggaacgaggttggcaTTTTGTGTA
TGGATAACATTGGTTTGTTTCGAATCGCTGAAATCCATGAAGGATAATTC
TTCTCCTCACtgggcaatatattgaaaatcgGAGACGATTCACGGCTAAT
TAATGGAATCGCTATGAGACTAACCTAGCCTGTACCACCCCGCCAACGGG
TGTTTTTCATATATTTGGCAAACCGAACTTTATCTTTTTTAGTCATCGAA
GAAGAGTCTGGTACAGGCTAAGACTAACCCTattgaaaaaacatttacac
agCAACGTTTACGCAGTGAGTTGAATCGGCAATAAACTCATTTATCACAA
CAAGCTTTGATAATATGATGGaaatttttgtaatataattTTTTATGTTC
TTGATGAAATGCATATACAGTAAAGTAAACAAAGGTTTGATAAGT
Run BLAST on NCBI

transcript from alignment at sc0000118:65844..78770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010870 ID=TCONS_00010870|Name=TCONS_00010870|organism=Clytia hemisphaerica|type=transcript|length=12927bp|location=Sequence derived from alignment at sc0000118:65844..78770+ (Clytia hemisphaerica)
CGACACGCAATTATAAACAACGTTAAATCAAGCCACAAAACGACGGCTTC
AAAGCGACACACGATCACGTCAAAACAACATAGAACAGTCACAAAATACC
ATCCACTACGATCACAACATAACGACAAACGTTCCAAAACGCGACAACAA
AAACACAAACACTTTACACGACATACAATCACTCATCCACAACAGGCACA
ACACGTGTCAACAAAAAAAGACAGTCTCACAACACACCAAAAAATCACTA
AACCAACAAATTTCACCAAAGATGAAAACCATAAAAAAGCGGAAGTCTTT
TTACTGGATGCATCGAAAATTGATGAAGATGGGGTCGTCAGAGGTCGAGA
CACAACCTCCAGTGCTGTCGGTAACATTATAGCTCCTGAAGAAGATGTGT
TAGCAAGtaagaaagaaaatatcaatAACCTTCTTACCAATGCTGATGGT
AAGAATCCAGAATCATTGGAGCAGAATCTGATGATGAACCAAGATTCAGC
TAAAGGAAGCATTGTTCCGATGTCTGTATCCTTTGGTGGTTTCAAATCAC
TCGACGATGCTGTGTTGCAATCGAATATACCAGCTGAAGTTGATTATCTG
AAAGGGAGTTATAATGGGAACAAGGATTTCATGAAGAGCTTGCAGACGCC
AACAGATGGACCTGAAGAGCAAGCAGTTAGTCGACAATTAGCAGGGGTCG
AAGGACAGAAGACAGAATCGTTGTCCAAATTTATAGAGAGTAATGATCCA
CAGGGGGAATTATCAAAGATCGGTGATTCCTTGACGATGTCAAAAATTGA
ACCAGGAGAGCTTCAAACTGGGGAATCTTCAAAGATTAGTGATTCCTTAA
CCACATCTAAACTTGATTCAGGTGACCCTTCAAAAATGATGGATTCTATT
TTAGAACCAATCAAGACATCAGCGAAATATTCACCAACAAGTTTTATGAA
TACAGAAACAGCCATTAAAGGTGACCCTGCCTTCTCACAAGCCGTAACCC
AAGACaatttactggacaactcagtCAAAGAAGCTATAAATgcagaaatg
aaaaaagatattgaTCTAGCCACGGGTGAAGAGAAACAAACGGATACACG
TTCGTCTGCTTATGAATATAAACCCAAggaatcttctttttcaaatgtCA
AGGAATTCCCTTCTTCTATGGTGGGTGATATCGCGACTGTAGCGGAGGCG
GTTGATAAAGCAGCCGTCAGTCGCTCACATAAAATGAAATATAAGAAACA
GCGCGAGAAAGTTGGGAAGTCCAAGAAACTAGTCAAACAGAGGTCTTCGA
ATAAACATCATAAAACATCGACACGTTCGAAATCCTTACACTCGCTGCCG
ACAGTTCCAAAAGTCAAAACAACAGCTCAACAAAAAGTAGAGGAATCCCC
GAAACAAATGACAGGGGAAGCACCATCTATAGAAGAGCAGCATGTGATTC
CCCAATTATCCGATTCCCTGGACGTCAATACACATCCTTCGGCACTGACC
GCGAGTGAACAGAATCTGATCGCGTCTATCGACCGCGCGGCCCGAAAGAA
GGACGTGGCGAACGAAATGGTTAACCGTATCATGATGCCGACTAAAAGTG
ATCCTTTCTCAGACCAAGCTCTCACTCCACCTGAACAACTCCTCGACATG
CTCTCCAATGGAAAATTCAACGACCCCTTACCTGAAAGCGTACTCGACCG
CTTATCCAATCTTGATCCGAACAAAGCTATGTTACCTGATTCAAACGCTT
TCATgcaaccaaaacaaaaaagccCTACTTCAGGTTTAATGCAAGTTGGG
TCTGAATTACTACCAGTCAAAAGCGTCGCTTTAAACCAGCCGCAAGTTAC
ACCACAACCGCTTCTAGACACAAGAGAGTTAGCGAGAGCTGAgaaacaaa
tgaaaacaaaccCATATTACCTAGCCCAGAATAACATGCTGTTAGACGCA
AACAATTTCAAAAGCATGCAAGATCTTTCTAATATTGGAGAAGCGATGTT
TTCTAAGAACGTTATCGACTTAAAACAGCCGATGATGATGGGCGGAAACG
AATTGGCTGAGGGTGGTTTTAATGATAACACCCTTTCTTTCGGGGCGTCA
TTAGGTGAACCGTCTTCCACAAGTAGCACGGCAGTTGCAAGAAACCAGAT
GAATAATAATAAAAACCTTCAATCGGTTACCGGTAAAACAAGATGTCCCA
ATTGCGTCACCGGTGGACAATATGGTAGCCAAGCTGCAGGATTTTCTCCA
CAGCGTTTACTACACAAAGAATCCCACTTTGTACATAATGATATCGATCC
TTTAGTGTTGGAGCAGATCCGACATCTACCGACAGTGAATATGAAGAAAT
TGATAGAAACACACAGGAAGAAGACTGGACACAACAAACACAAAGGGAAA
ACAACTTTCCAAGATGCAATGTCTGATACGAGTGTCTCACATAACACGGA
CGATGAATTCGTACCTGAGAAAATTGTCACTCTTCCTGAAGAGCACGTCA
ATCGTAAGTCGGTGTTCTTTAAGACCTATTCGCACTTTGATACAGTATAG
AAAACGCCCTTGCCGCGCAGCCCTGGCTTACTATTCCCCATAAGTAGTGA
GTTAAAAAttcctatcgaaatcccaatagaatagggatagaaattttatt
gttcccaGCTCAAAAAAcccaatggggatggttttggagtgcaatttttt
atatcaaaattttgaatggggataaAATGAAAGTCCATTTTCAGTTGGCT
GAAACtgtagggtatttttttcaaccggatatgaaattttggtcaatttt
tttagTTACCGGGTCTGTAACACAGAGAGGTGTGTTCGTAGCCTCTCTAA
TCAGTAACCAGACCTTACAACATAACTGTGACTTTGACGCTGACGTTGAC
GGTATCGACCACGTctttaaataaaacaaaaatttcacatATTCACAGTT
TTCATATTATTAAACTAAAGaacgtttttcttttgaatggTAGGAAAAAG
TTTCCATAAAAAGTAGGCCCTTGTTAAACATATTTATTTCTGAATGCTAC
CTTTCGGCTAACCATTTTTGGTCCTCAATCACAAACAACTATCCATACAG
ACTTTCGAACGTCACGTGATCTATTTTTAGCAATCTGATTCGTCGAAAAC
TGTGACGTAACGTATGAAAATCCATCCCATCTCACTAGTCTGTCCAGCCC
GCCTCAATATAAACAGCACCTAATGGATTCTTTTGTTCCGATTCTCAAAA
TACCAGCCCCTGCCCAACTGGCACAcgacgtcgtttcaacgttcatttaa
cgttatatggacgttgtgaacgttagataaacgtctaaaaaacgttgtgt
gccagctgggtgacTATAAGCAAGAAATGTACCCATATGGCTATAGGcaa
tttcacagtcgcaaagcgtaatgggtaatcaggaccactgtgCGCTAACG
ACGatttactattggtccaaagttttgaaatttttttaagatttttgcgt
cCAGCCAACGGGAGGCCGTTAAAGATGCGCAaacagtcctgattacccat
gatccatttcgactgtgaaatggcctataagCAAGAAATGTACCCATATG
AACCATCACTgacttaaaaaaactttattctcTTTGTTCACAGACGGGTA
CGCAGTTTGCAAGTATGGACCTTGTTTGAATGGAGGTGTTTGTACAGCGC
ATCCAGATAAATATTATTGCAGTTGTTTGCCTGGTTGGATCGGAACCAAT
TGTGAACGTAAGAAGCTCATTTGATGAAATAAATTTGTTCTTAGTATGCA
ATCTCTTAATCACTAGAATCTGATGGGTTCTTGAGATTGCAATCTTCTCC
ATATTTGCACNGCTTAGTATGTAGTCTCTTAATCACTAGAATCTGATGGG
TTCTTGAGATTACAATCTTCTCCATATTTGCACGATTCATTTATATTATA
TTTGCTTATTCCCGAGGTATCATAGAAAATCTTTCTAGCTAGCAACTATT
GATTCAATTTCTGAATTAATTCACTtgtggtgtaaatgcatcgagatcGC
TGGAGGATAGAAAGCCCATGTTCCGAATCACGAGACCCTAGGTTTGGCTC
CCACTACATAATAGTCTAGAACATTTCACATTCTCTTAAAGGACGGAACG
CGTGTTTTCCGAATCCATGTCATTACGGAATTTGTTCACCGAATATGGAC
GGGTTCACATGCACGTGCAAAGCTGGATTCAAAGGGAATCTCTGTAATGG
TGAgttctttttttctgttttacgTTTTGACGATCACGTGGAACATTCAT
TTTCTCGGCCGAATACCTAATTACACGAATCTTACTAGTCAAGTATTCAA
CGGCTTtaaaattaacacgcaaaaaaacaacacgaattttatttgctttt
tcaaggacaccacagctggttttaattaaaggGGTTTTAAATAACACGAA
ATTTCTTAATTCGTGTTAATTACATGTCTACTtattttcgtgtaataagg
taactTTAGAGTTTCATTTCATGAGCAAATTTTCTCAGTCAAAACGTTCT
CTTTTCAAATTTGGGAATAGAGTTGAACTGTCTTTGACAAGTTATTTTAT
TGGCTAATAGTGATTTTTGATCATGTTTTGTTTAGTTACGTAATAATAAT
TACATATATAACATAACATATATAACATGAAAGACCTCTATTTTCACGGC
AAATAACTTCCAAGCTTGAATTCCATCACACCAGCtaatcttttaaaatg
tttaataACCTGATGGATCAGGTCGGGTTATCGTGGTACATTGGTATAAC
CCGGGCAGTGAAATCCACTGTCCTGCTTCTTACCCAAACTAGAATTATGC
AACACCCATCCACTGTCCCGTTTCGTACTCAAACTAGAATTATACCACAC
CCGTCCACTGTGGATGGGCGTAGTgctgttccaattttttttgcgaagcg
ggacagtcaAGAAAAGTCGTTTTGGGTGCGATGCGGGACAGTCAGAAGTG
ACGGAGAATtgttttggtctgtaaaatttatgttGGGCACGAAGTTGCTT
TCAGTGTCCGGGTCATACCCATGTACCACGCTAACCCGACCTGATCACAA
CAGTCAAACTAACAAGTCACTGTTTTGCAAACTAAGATCAAAATAATAAT
TAGTGCAGTGAAAATAATTCCACTCAATCATTTCTTCCTACAGTACTGGA
TCATTGCCATCCGAATCCATGCCATAACAACGGTTTGTGTACAGAAACAC
AACATGGTGTACAATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGT
GAAAGTAAGTATCATCTTGTTCAATCCCTCTAATTTAGCCAACAACCAAG
CGGTTACATTAAGACTCTCGCTGTAGCCAAGTTGAAACCGTAGATAAGTC
GGGTCAAAAACTTAAAAGTAAGATCTGACCGTACTGAATATTTTCAAGAT
TCCGATTTCCAACCTAATTTGGATTGTATTCGTTTGGATTNTTGTACGTG
CAAAGCTGGATTCAAAGGGAATCTCTGTAATGGTGAGTTCTTTTTCTGTT
TTACGTTTTGACGATCACGTGGAACATTCATTTTCTCGGCCGAATACCTA
ATTACACGAATCTTACTAGTCAAGTATTCAACGGTTTtaaaattaacacg
caaaaaaacaacacgaattttatttgctttttcaaggacaccacagctgg
ttttaattaaaggGGTTTTAAATAACACGAAATTTCTTAATTCGTGTTAA
TTACATGTCTACTtattttcgtgtaataaggtaactTTAGAGTTTCATTT
CATGAGCAAATTTTCTCAGTCAAAACGTTCTCTTTTCAAATTTGGGAATA
GAGTTGAACTGTCTTTGACAAGTTATTTTATTGGCTAATAGTGATTTTTG
ATCATGTTTTGTTTAGTTACGTAATAATAATTACATATATAACATAACAT
ATATAACATGAAAGACCTCTATTTTCACGGCAAATAACTTCCAAGCTTGA
ATTCCATCACACCAGCtaatcttttaaaatgtttaataACCTGATGGATC
AGGTCGGGTTATCGTGGTACATTGGTATAACCCGGGCAGTGAAATCCACT
GTCCTGCTTCTTACCCAAACTAGAATTATGCAACACCCATCCACTGTCCC
GTTTCGTACTCAAACTAGAATTATACCACACCCGTCCACTGTGGATGGGC
GTAGTgctgttccaattttttttgcgaagcgggacagtcaAGAAAAGTCG
TTTTGGGTGCGATGCGGGACAGTCAGAAGTGACGGAGAATtgttttggtc
tgtaaaatttatgttGGGCACGAAGTTGCTTTCAGTGTCCGGGTCATACC
CATGTACCACGCTAACCCGACCTGATCACAACAGTCAAACTAACAAGTCA
CTGTTTTGCAAACTAAGATCAAAATAATAATTAGTGCAGTGAAAATAATT
CCACTCAATCATTTCTTCCTACAGTACTGGATCATTGCCATCCGAATCCA
TGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGTACAATGTGA
ATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAAGTAAGTATCATCTTG
TTCAATCCCTCTAATTTAGCCAACAACCAAGCGGTTACATTAAGACTCTC
GCTGTAGCCAAGTTGAAACCGTAGATAAGTCGGGTCAAAAACTTAAAAGT
AAGATCTGACCGTACTGAATATTTTCAAGATTCCGATTTCCAACCTAATT
TGGATTGTATtcgtttggatttttttttgaacGTATCGGCAAGTATACAA
GCTTAATCCTCTCTGGCGATCACACGCCAACTTTTTCGGACGGCACTAAA
TcttagaaaagtcaaaaaagaatCGCATAATAGATCAGCTAAAGATTAGA
TTTGGTGTTCACGTGCTCGTAGATAGGAAGTAACAAACCCTGACTCCGTT
TAAGTCAACTCTTTTCTTTTACTAAACGTTTTAGTGGAATCAAAATGCGA
GCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGAGAATTTGTGGATC
ATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGTTAATTGTGAAGGT
TCGTATTAGAGGAATTACTTTACAAATAGTTTTTTGTAATTCCAGAGCAA
AGCTCAGTTTAAATGCAGTCACCCCAAGGTTTAAGAAGATATAATCAAAG
CTAGTGGCAAAGCTAAAAGAAAATAGGAAGTGGTCTTTTTATGACCTCAT
CGCACGAAACCAAGAAAATCCAGAAACTACAATctaaaaaagacgaaaaa
actaTGCACAAAAGTCACCAAATTAGTACAATCTAGTTGGAATGTAACTA
TTAGCATCtagtcaaaatacaaaatagcCAGTCTCAAAACAAAACTGCTC
AACCAGTAACATTTCACCTTTTCCTCATAGATTACATCAGCCCGACAAAG
CCACCGCCTACCATTCCATTGAAACAAGTTGGTCCACAGGCTATTCCCGC
CCCAATGAACGCCCCAAATAGTGACATCCGTGATGTTTTCACATACCGGT
CTACGGATCAATACGGAAATCCGTATTCGGAAACCCACGAAGAGATACGG
AAAGGGCCGCAAGGGTTAGTAAACCCAGGCGCTAGTTTAGTTCCGCATCC
AGTTGCGCTTGCTGCAATGAATGAAGCTCCAGGTACCCATTTTGTCGGAG
CACCGAATCTTGCAGAACACGGTGACGTCATCATGCATTCATCCCGGGAA
GACGATAAAGCGGTTGTCAGTACATCAACAAGCGAAGACGAAATTAAAAA
TCTTCCGGAAAACATCAAAGATGACCGGTATCAAACACATTTCGTAGAAG
TTGATAAGGATAATGAAGGTCATGAATACAAACATAAATCATTAAGTCAT
AACCATCTCCATGTGGGTGAATCAGTGGGCGTTGGTGAATACGCCCAACA
AAAACACGCCCCTAATAATGATGAAGAGGCGGGGAAAGTGATTTCGGATG
TAGAAAAACATCATGAAGAAATAAAGGAGAATTCGCATCAGCAACATGAC
CACGATGAACACATTTCAAACGAAAAACACGTCCCACAGAATGTTTTTGT
AGATCATTCATACCTCGATTTACCACACCACGCTCGTCAACATGAACAAT
CgagcaaaacgttcgaaacaaaacaaactatCGAGGCACAAGCAAGCGAA
AGATCAAAACTCGATCGACCAGATGCAGAAACATCAGAAATGAGCAAACA
GAATTTAAATCGAAATGGTAGCCCGAGTAGTGATGATGATAATAAAAGCA
ATATCAAAACAATAGGGGACATGTTAAAAATGTTTGACCAAGCTACAAAA
ACTCTTTCTACAAAGATCATTAAAAGTGCTAATAAAGTCATGCTCAGAGA
GGGAAAAGCACCTTACATACCACAAGTAGAAAAGTCGGGAAAATCAAACA
GCAATCATCAATCCCGATCGGGACAAATCGGGAACGCAACACAATCCCCG
TTTTCAgaaatgaaacattttatgCAGAATTTATATAATTTAACCAATAA
AATCACAAACATTAACAACGCCAAATCGGGTGTTGGGGCGTCGATGAAGG
GCGTTAAGAAACACGCCCTAGGCGCTACTGACGATCTATACAAACATTTT
ACAGACCATCAGAAAAATGCTTATACAAGCTGGAGACGGCAAGCATTGAT
CAACTACCATGCCCGTAATCCGGGAAAACCGGTTCCCCGCAATACGGTCT
CTTTGTCCGAGAATTCATTGTGTCCGAAATTCTGCAGGTTATTTTGTGAT
CCGTGGTGCGTGAAGATTGGATGTTGTAAACTTTCACAGGAGAAGTTGAA
CATTTATAAAGAGATAGAGGAAAAGCAAGAagcacatttaaaaaatacgA
AACCGTCTGGACTTTTGTTGCCCGATGAAGGTAGGAAGAAGGCTTGAAAT
AGTGtatatataccctggacaaagtttCGCGATCacggtgaagaaaaaaa
gtttttttaatgtggtaccctaatggtagcctAGATATCTAAGCCAGTTT
TCAGTCACTTGCTATAAAATATGAaagttaagttgtgactgaaatACTGT
TATTCAGCGCTAACTTAAATTTCACggatataaaaaaatcattaaagcac
CGAAAACGCTATACATCTTTATACAGTATATCGCGCGCTGTAATATCTGG
CTTCATTAATCAGGccaccctaatggtagcacttaTCAAAGTTAGTGaac
aattttaaacttttatttaaTTATAAACTGACCCACATCGAGTAgcgcta
ccattagggtaccacttttaaaaaaacttcgatcaaagattgcCGATATA
GCTTGGTCAAAGTAATACTGACCTTAGTGGGTTTTCCATGTTTtactaag
ttacgtaatttacacCATTACGGAAGCGTTCGAATATGCAGAGGCGATAA
CTTgctttcataatggcggaaattacgtaacttaatgAAACATAGAAAAC
CTATAAAGTGAACAAATCTTCACAACCTCCGCGAGGCCGTTTTCTAACGA
AttggaaaaattacaaaaaagtattttaattTACCTCATTTTGTTATGTA
AATACGTCGTAATGAGAGAATTCTTCTGTCAATTATAACTTCCAACATGC
CTGAAAATATGAATTTATTATTGAAGTAACAACATTTAGGAAAAAAACTT
ActacgttatatggacgttatgaacatttagataaacgttgaaactaCGC
TTCAACGCTTCAACGTGTCCATTTTTAATTATTGGCCAGAAGTTcatgga
gttatcaaaacagtACAAAATATAAGTTGCTTGTTGGAAATTTAgtccat
ttttgttttatttttcaatataatCCTTTATTATAATCTTAATATATGAT
GAAAATTATGTcaacaaataaagaaaaaatcaaattttgaatatatttta
caGTCGAAGAAAACGTACAGACGACAAAACGACAACATAATAACGACAAT
GACGTCACTTTAACACGACAACCGACGGCGACAAATAACGAGACTTTAAA
CGACAATTGTCGGAAATGTAACGAGAATGCAGACTGTGTACAGGGGAGTG
AACAGAAAGGTTGTGTCTGTAAACCGGGGTTCAGCGGTGACGGAAAAGTG
TGCACAGGTAAGTCAGACTACTTTTCTTTTGAACTTTAAAATCTCTTGTC
TTCGTCCAAGAATTTCACAGGCCTCTATAAGCCACTGCACTGTTGCAGAA
TAGAGTTCTATATTAAACAGGTTGAGGCCCCTACCACCAGGCAATTTTCA
Tgagttttgtttttatgttttatattgataatattttcaagaattatcaa
aaagggGATCCTAACATGGTCCGGGGATTATAAAATACCAATTATTGGAC
ACTTAGGGAAATTTTATCTTTGGTCGGTAAAGATATTGCAAGAATAGAGT
AGAGGTCCATCTGAAAGCTCTGGGTAGTTCGGTGAagataccttaagaga
agaaattttggcgactgaGCCCATTTgccaattttggtgcaatttgtcgg
aatttatttttaataaaatttctaaatttggcgcTCGAATAAAATTTGGC
GAAtgactaattttttttctcaatattttagctgaaaaaagaggaaaaaa
aaaggtttttagaaGAAACAGAGactaatttgaaagaaaattaaatttgg
cgagaatctGTTTTGGCGAGTGACCTATAAAGttaaattcgccaaaattt
ctttccttaaggCAGAGATTCTTTCACCATAATAACCTACGTCCCGACTG
GAAGTGATCGGGATTCGATTACAGTCCCTTGCCGTACAAGTCTGCAATTT
AATCCTTCCTCTGGGTAGTTTTTTCGTCGTTTACATAATTATGACTTTTT
CCTTTCTACTAGTGGACACGTGCATGTTATGTCATTTGGACGCTGAATGT
GAGGGTGAAAGATGtttctgtaaaaataatttcgaaGGAGATGGATACGA
GTGTCGACCTTTGCACGGTATGTATTCTCATCTTCCAACAAGGTTCAGAA
AAATGGTacacgtacacgtttttttataagaacatccaaacatTTTTAag
ccttggaatgttcttaacatgttcttatttttgctatttttttagtattt
tagccaattttcctacgaaatttggtcttcaaagccttcaaatgttgtta
actttttcttaagattttggctattgaagcctaatgttcttatatagttt
attcttataagaaaacgtgtaacaagtgatacttgtcttttataagcaca
caAAATTTCGAGAACAGGCTCGGAGATGCTTAGGACAAGGGCTTGACAgg
gctgaaaaatgcttataaggatgaaaaatttgaaggaaATTCTGAAAATC
CGAAACAATCCCAGCTAAAATcaggaaaatacatttttttcgtaggctca
agctAATGCTTGGCAAATGCTTATATTtttgccatatctgagcctagata
tgcttataagtgcattataaaaaacatgtacctgGTTAATCTACAGAATA
TTAGACATATAATTGAAACAATTAAGACAGAAAACCCTAAAACCCTTATA
CTGTAGGCTcgtaaaaataataaaaaaacccCTGGAATTTAAGATTCTCA
TCAATGTAAAATTGCCATCTATGCCATTCAATAGTCAATCAACGCCAATT
ATAGTAGGGGCCAACCCCAAACCCCAATTCCACCAATCAAAACCCGTTTT
TAGAAAATTCGACTATAGAACATCGAGAGGGGGCAAAAGTTGTGACTGTA
ACGTCAGTTTATTGTCCATAAAAACTTTTAACAGATCTAATTTGCGCCCC
CTCTACTgaattataaaatatttcatcaatTTCACAATCACAAAAAGGAA
TTTCAGATTCTTTCAAAGacaattttattttacttttctaGCCTCGAAAC
GGAACCAATGTTCAGATTGTCATTTAAAGGCTGATTGTACATCAGGAGAA
TGTGTTTGCAGTATGGGTTACTATGGAAACGGCAAAAATTGTTGGCCCAT
ACCCATCATTTGAATATGAAAAAGTAGATTCTTCTGGGCTACAGTTTTAT
CTAAATCTTCAAAACCATGATATGCNGATAGGAACTAACGCTCACTGGAT
ATATGAAAAAGTTGATTCTTCTGGGCTACAGTTTTATGTGAATCTTCAAA
ACCATATTGGCTACTTCAAAATATACAGAATTGGGATTAACGCCGTCTGG
ATTCTATCTCATCTGCGCGCCAGGATATTCGCTCCATTTATCACCACCAA
AACATCTGTTTACAGTAAAACTGCTTGTTGTTAGAATCGCTTAGGTGATG
TCTAAGAGTCTAGGGCAAATTCATGTAATCTGAGACAAAAAACAGAAGCA
TTTTGTAAACCGCGTCCCCGTGTGTctcaggctttatttacgttgaTGAT
TGACGCCAGggaattatctagcgctatcagtaagaataaaaaagctgata
atgcacagggaacgaggttggcaTTTTGTGTATGGATAACATTGGTTTGT
TTCGAATCGCTGAAATCCATGAAGGATAATTCTTCTCCTCACtgggcaat
atattgaaaatcgGAGACGATTCACGGCTAATTAATGGAATCGCTATGAG
ACTAACCTAGCCTGTACCACCCCGCCAACGGGTGTTTTTCATATATTTGG
CAAACCGAACTTTATCTTTTTTAGTCATCGAAGAAGAGTCTGGTACAGGC
TAAGACTAACCCTattgaaaaaacatttacacagCAACGTTTACGCAGTG
AGTTGAATCGGCAATAAACTCATTTATCACAACAAGCTTTGATAATATGA
TGGaaatttttgtaatataattTTTTATGTTCTTGATGAAATGCATATAC
AGTAAAGTAAACAAAGGTTTGATAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006107XLOC_006107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010870-exon-sc0000118-1491911889:65844..68346TCONS_00010870-exon-sc0000118-1491911889:65844..68346Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:65844..68346TCONS_00010870-exon-sc0000118-1510915933:65844..68346Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:65844..68346TCONS_00010870-exon-sc0000118-1575043694:65844..68346Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:69487..69600TCONS_00010870-exon-sc0000118-1491911889:69487..69600Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:69487..69600TCONS_00010870-exon-sc0000118-1510915933:69487..69600Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:69487..69600TCONS_00010870-exon-sc0000118-1575043694:69487..69600Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:69985..70092TCONS_00010870-exon-sc0000118-1491911889:69985..70092Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:69985..70092TCONS_00010870-exon-sc0000118-1510915933:69985..70092Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:69985..70092TCONS_00010870-exon-sc0000118-1575043694:69985..70092Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:71037..71147TCONS_00010870-exon-sc0000118-1491911889:71037..71147Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:71037..71147TCONS_00010870-exon-sc0000118-1510915933:71037..71147Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:71037..71147TCONS_00010870-exon-sc0000118-1575043694:71037..71147Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:72828..72941TCONS_00010870-exon-sc0000118-1491911889:72828..72941Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:72828..72941TCONS_00010870-exon-sc0000118-1510915933:72828..72941Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:72828..72941TCONS_00010870-exon-sc0000118-1575043694:72828..72941Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:73274..74773TCONS_00010870-exon-sc0000118-1491911889:73274..74773Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:73274..74773TCONS_00010870-exon-sc0000118-1510915933:73274..74773Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:73274..74773TCONS_00010870-exon-sc0000118-1575043694:73274..74773Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:75797..76000TCONS_00010870-exon-sc0000118-1491911889:75797..76000Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:75797..76000TCONS_00010870-exon-sc0000118-1510915933:75797..76000Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:75797..76000TCONS_00010870-exon-sc0000118-1575043694:75797..76000Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:76756..76860TCONS_00010870-exon-sc0000118-1491911889:76756..76860Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:76756..76860TCONS_00010870-exon-sc0000118-1510915933:76756..76860Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:76756..76860TCONS_00010870-exon-sc0000118-1575043694:76756..76860Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1491911889:77785..78770TCONS_00010870-exon-sc0000118-1491911889:77785..78770Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1510915933:77785..78770TCONS_00010870-exon-sc0000118-1510915933:77785..78770Clytia hemisphaericaexon
TCONS_00010870-exon-sc0000118-1575043694:77785..78770TCONS_00010870-exon-sc0000118-1575043694:77785..78770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:65844..78770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18252e-06	1.35253e-06	0	0	0	0	2.38518	2.35241	0.441035	0.619749	3.90319e-08	0	2.98987	1.7465	0.836811	1.96394	1.05984	1.91274	4.50563e-05	0.587543	0.902187	0.575598	1.93473e-07	0.731504	3.63939	3.1186	5.45235e-06	4.70495e-06	0	5.4186e-06
Blast
[Close]
BLAST of TCONS_00010870 vs. Swiss-Prot (Human)
Match: FAT1 (Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.212e-25
Identity = 58/148 (39.19%), Postives = 75/148 (50.68%), Query Frame = 1 
Query: 2518 CKYGPCLNGGVCTAHPDK-YYCSCLPGWIGTNCE-RRNACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCED 2952
            C   PC NGGVC   P   YYC C   +IGT+CE   N C   PC YG  C  +  GF C C+  + G  C +  +C   PC N G C ++  G  C+C  GF+G  C+ +      NPCL+G  C      Y+C C   +RG +CED
Sbjct: 4017 CASNPCQNGGVCNPSPAGGYYCKCSALYIGTHCEISVNPCSSKPCLYGGTCVVDNGGFVCQCRGLYTGQRCQLSPYCKDEPCKNGGTCFDSLDGAVCQCDSGFRGERCQSDIDECSGNPCLHGALCENTHGSYHCNCSHEYRGRHCED 4164
The following BLAST results are available for this feature:
BLAST of TCONS_00010870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT12.212e-2539.19Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 S... [more]
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