TCONS_00010868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010868
Unique NameTCONS_00010868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010868 ID=TCONS_00010868|Name=TCONS_00010868|organism=Clytia hemisphaerica|type=transcript|length=3453bp
CTCGATTACATTCTCGATGCCGAGactattttttggcttttttggcTCGT
AAAAATGAGTTTATCACGCGTAacttgacattaaaatttgacgTAAATTT
TCGTTGGTATTGGGATTGTAATCATGAGGCTATTTTGCTTGATTGGATTT
TGGCTCAGTCTGGGGTgtgtattttgcagaccagatttGTTCCACGAGAA
TGATGATGATGACGGGTACGCAGTTTGCAAGTATGGACCTTGTTTGAATG
GAGGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAGTTGTTTGCCT
GGTTGGATCGGAACCAATTGTGAACGACGGAACGCGTGTTTTCCGAATCC
ATGTCATTACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGT
GCAAAGCTGGATTCAAAGGGAATCTCTGTAATGTACTGGATCATTGCCAT
CCGAATCCATGCCATAACAACGGTTTGTGTACAGAAACACAACATGGTGT
ACAATGTGAATGTTCACCTGGTTTCAAGGGAAGGCTCTGTGAAATGGAAT
CAAAATGCGAGCCGATCAATCCATGCTTGAATGGAGGGACGTGTCGAGAA
TTTGTGGATCATTATTACTGCGCATGTCCGTTGAGTTTCCGAGGTGTTAA
TTGTGAAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGA
AACAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGT
GACATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAATCC
GTATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAA
ACCCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAAT
GAAGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGG
TGACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTA
CATCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGAT
GACCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCA
TGAATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTGAAT
CAGTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAATGAT
GAAGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAAT
AAAGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAAACG
AAAAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGATTTA
CCACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaacaaa
acaaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAG
ATGCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGC
CCGAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGACAT
GTTAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTA
AAAGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCA
CAAGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGG
ACAAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacatttta
tgCAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAACGCC
AAATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGG
CGCTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATGCTT
ATACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAATCCG
GGAAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTG
TCCGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGAT
GTTGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAA
AAGCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTTGCC
CGATGAAGTCGAAGAAAACGTACAGACGACAAAACGACAACATAATAACG
ACAATGACGTCACTTTAACACGACAACCGACGGCGACAAATAACGAGACT
TTAAACGACAATTGTCGGAAATGTAACGAGAATGCAGACTGTGTACAGGG
GAGTGAACAGAAAGGTTGTGTCTGTAAACCGGGGTTCAGCGGTGACGGAA
AAGTGTGCACAGTGGACACGTGCATGTTATGTCATTTGGACGCTGAATGT
GAGGGTGAAAGATGtttctgtaaaaataatttcgaaGGAGATGGATACGA
GTGTCGACCTTTGCACGCCTCGAAACGGAACCAATGTTCAGATTGTCATT
TAAAGGCTGATTGTACATCAGGAGAATGTGTTTGCAGTATGGGTTACTAT
GGAAACGGCAAAAATTGTTGGCCCATACCCATCATTTGAATATGAAAAAG
TAGATTCTTCTGGGCTACAGTTTTATCTAAATCTTCAAAACCATGATATG
CNGATAGGAACTAACGCTCACTGGATATATGAAAAAGTTGATTCTTCTGG
GCTACAGTTTTATGTGAATCTTCAAAACCATATTGGCTACTTCAAAATAT
ACAGAATTGGGATTAACGCCGTCTGGATTCTATCTCATCTGCGCGCCAGG
ATATTCGCTCCATTTATCACCACCAAAACATCTGTTTACAGTAAAACTGC
TTGTTGTTAGAATCGCTTAGGTGATGTCTAAGAGTCTAGGGCAAATTCAT
GTAATCTGAGACAAAAAACAGAAGCATTTTGTAAACCGCGTCCCCGTGTG
TctcaggctttatttacgttgaTGATTGACGCCAGggaattatctagcgc
tatcagtaagaataaaaaagctgataatgcacagggaacgaggttggcaT
TTTGTGTATGGATAACATTGGTTTGTTTCGAATCGCTGAAATCCATGAAG
GATAATTCTTCTCCTCACtgggcaatatattgaaaatcgGAGACGATTCA
CGGCTAATTAATGGAATCGCTATGAGACTAACCTAGCCTGTACCACCCCG
CCAACGGGTGTTTTTCATATATTTGGCAAACCGAACTTTATCTTTTTTAG
TCATCGAAGAAGAGTCTGGTACAGGCTAAGACTAACCCTattgaaaaaac
atttacacagCAACGTTTACGCAGTGAGTTGAATCGGCAATAAACTCATT
TATCACAACAAGCTTTGATAATATGATGGaaatttttgtaatataattTT
TTATGTTCTTGATGAAATGCATATACAGTAAAGTAAACAAAGGTTTGATA
AGT
Run BLAST on NCBI

transcript from alignment at sc0000118:65466..78770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010868 ID=TCONS_00010868|Name=TCONS_00010868|organism=Clytia hemisphaerica|type=transcript|length=13305bp|location=Sequence derived from alignment at sc0000118:65466..78770+ (Clytia hemisphaerica)
CTCGATTACATTCTCGATGCCGAGactattttttggcttttttggcTCGT
AAAAATGAGTTTATCACGCGTAacttgacattaaaatttgacgTAAATTT
TCGTTGGTATTGGGATTGTAATCATGAGGCTATTTTGCTTGATTGGATTT
TGGCTCAGTCTGGGGTgtgtattttgcagaccagatttGTTCCACGAGAA
TGATGATGATGGTAAGATTTTAAAGACCCAGAAAAGGTCTCATATACAAC
AACATCACCATGACGACACGCAAAAACACAAACGACAGCAAATGACCAAT
CATAACGCACGACGCAATACACAACACAAAAGACACTAcatgacaaaaaa
taacaatGTTAAGGAGCTTAATACCAAACGACACGCAATTATAAACAACG
TTAAATCAAGCCACAAAACGACGGCTTCAAAGCGACACACGATCACGTCA
AAACAACATAGAACAGTCACAAAATACCATCCACTACGATCACAACATAA
CGACAAACGTTCCAAAACGCGACAACAAAAACACAAACACTTTACACGAC
ATACAATCACTCATCCACAACAGGCACAACACGTGTCAACAAAAAAAGAC
AGTCTCACAACACACCAAAAAATCACTAAACCAACAAATTTCACCAAAGA
TGAAAACCATAAAAAAGCGGAAGTCTTTTTACTGGATGCATCGAAAATTG
ATGAAGATGGGGTCGTCAGAGGTCGAGACACAACCTCCAGTGCTGTCGGT
AACATTATAGCTCCTGAAGAAGATGTGTTAGCAAGtaagaaagaaaatat
caatAACCTTCTTACCAATGCTGATGGTAAGAATCCAGAATCATTGGAGC
AGAATCTGATGATGAACCAAGATTCAGCTAAAGGAAGCATTGTTCCGATG
TCTGTATCCTTTGGTGGTTTCAAATCACTCGACGATGCTGTGTTGCAATC
GAATATACCAGCTGAAGTTGATTATCTGAAAGGGAGTTATAATGGGAACA
AGGATTTCATGAAGAGCTTGCAGACGCCAACAGATGGACCTGAAGAGCAA
GCAGTTAGTCGACAATTAGCAGGGGTCGAAGGACAGAAGACAGAATCGTT
GTCCAAATTTATAGAGAGTAATGATCCACAGGGGGAATTATCAAAGATCG
GTGATTCCTTGACGATGTCAAAAATTGAACCAGGAGAGCTTCAAACTGGG
GAATCTTCAAAGATTAGTGATTCCTTAACCACATCTAAACTTGATTCAGG
TGACCCTTCAAAAATGATGGATTCTATTTTAGAACCAATCAAGACATCAG
CGAAATATTCACCAACAAGTTTTATGAATACAGAAACAGCCATTAAAGGT
GACCCTGCCTTCTCACAAGCCGTAACCCAAGACaatttactggacaactc
agtCAAAGAAGCTATAAATgcagaaatgaaaaaagatattgaTCTAGCCA
CGGGTGAAGAGAAACAAACGGATACACGTTCGTCTGCTTATGAATATAAA
CCCAAggaatcttctttttcaaatgtCAAGGAATTCCCTTCTTCTATGGT
GGGTGATATCGCGACTGTAGCGGAGGCGGTTGATAAAGCAGCCGTCAGTC
GCTCACATAAAATGAAATATAAGAAACAGCGCGAGAAAGTTGGGAAGTCC
AAGAAACTAGTCAAACAGAGGTCTTCGAATAAACATCATAAAACATCGAC
ACGTTCGAAATCCTTACACTCGCTGCCGACAGTTCCAAAAGTCAAAACAA
CAGCTCAACAAAAAGTAGAGGAATCCCCGAAACAAATGACAGGGGAAGCA
CCATCTATAGAAGAGCAGCATGTGATTCCCCAATTATCCGATTCCCTGGA
CGTCAATACACATCCTTCGGCACTGACCGCGAGTGAACAGAATCTGATCG
CGTCTATCGACCGCGCGGCCCGAAAGAAGGACGTGGCGAACGAAATGGTT
AACCGTATCATGATGCCGACTAAAAGTGATCCTTTCTCAGACCAAGCTCT
CACTCCACCTGAACAACTCCTCGACATGCTCTCCAATGGAAAATTCAACG
ACCCCTTACCTGAAAGCGTACTCGACCGCTTATCCAATCTTGATCCGAAC
AAAGCTATGTTACCTGATTCAAACGCTTTCATgcaaccaaaacaaaaaag
ccCTACTTCAGGTTTAATGCAAGTTGGGTCTGAATTACTACCAGTCAAAA
GCGTCGCTTTAAACCAGCCGCAAGTTACACCACAACCGCTTCTAGACACA
AGAGAGTTAGCGAGAGCTGAgaaacaaatgaaaacaaaccCATATTACCT
AGCCCAGAATAACATGCTGTTAGACGCAAACAATTTCAAAAGCATGCAAG
ATCTTTCTAATATTGGAGAAGCGATGTTTTCTAAGAACGTTATCGACTTA
AAACAGCCGATGATGATGGGCGGAAACGAATTGGCTGAGGGTGGTTTTAA
TGATAACACCCTTTCTTTCGGGGCGTCATTAGGTGAACCGTCTTCCACAA
GTAGCACGGCAGTTGCAAGAAACCAGATGAATAATAATAAAAACCTTCAA
TCGGTTACCGGTAAAACAAGATGTCCCAATTGCGTCACCGGTGGACAATA
TGGTAGCCAAGCTGCAGGATTTTCTCCACAGCGTTTACTACACAAAGAAT
CCCACTTTGTACATAATGATATCGATCCTTTAGTGTTGGAGCAGATCCGA
CATCTACCGACAGTGAATATGAAGAAATTGATAGAAACACACAGGAAGAA
GACTGGACACAACAAACACAAAGGGAAAACAACTTTCCAAGATGCAATGT
CTGATACGAGTGTCTCACATAACACGGACGATGAATTCGTACCTGAGAAA
ATTGTCACTCTTCCTGAAGAGCACGTCAATCGTAAGTCGGTGTTCTTTAA
GACCTATTCGCACTTTGATACAGTATAGAAAACGCCCTTGCCGCGCAGCC
CTGGCTTACTATTCCCCATAAGTAGTGAGTTAAAAAttcctatcgaaatc
ccaatagaatagggatagaaattttattgttcccaGCTCAAAAAAcccaa
tggggatggttttggagtgcaattttttatatcaaaattttgaatgggga
taaAATGAAAGTCCATTTTCAGTTGGCTGAAACtgtagggtatttttttc
aaccggatatgaaattttggtcaatttttttagTTACCGGGTCTGTAACA
CAGAGAGGTGTGTTCGTAGCCTCTCTAATCAGTAACCAGACCTTACAACA
TAACTGTGACTTTGACGCTGACGTTGACGGTATCGACCACGTctttaaat
aaaacaaaaatttcacatATTCACAGTTTTCATATTATTAAACTAAAGaa
cgtttttcttttgaatggTAGGAAAAAGTTTCCATAAAAAGTAGGCCCTT
GTTAAACATATTTATTTCTGAATGCTACCTTTCGGCTAACCATTTTTGGT
CCTCAATCACAAACAACTATCCATACAGACTTTCGAACGTCACGTGATCT
ATTTTTAGCAATCTGATTCGTCGAAAACTGTGACGTAACGTATGAAAATC
CATCCCATCTCACTAGTCTGTCCAGCCCGCCTCAATATAAACAGCACCTA
ATGGATTCTTTTGTTCCGATTCTCAAAATACCAGCCCCTGCCCAACTGGC
ACAcgacgtcgtttcaacgttcatttaacgttatatggacgttgtgaacg
ttagataaacgtctaaaaaacgttgtgtgccagctgggtgacTATAAGCA
AGAAATGTACCCATATGGCTATAGGcaatttcacagtcgcaaagcgtaat
gggtaatcaggaccactgtgCGCTAACGACGatttactattggtccaaag
ttttgaaatttttttaagatttttgcgtcCAGCCAACGGGAGGCCGTTAA
AGATGCGCAaacagtcctgattacccatgatccatttcgactgtgaaatg
gcctataagCAAGAAATGTACCCATATGAACCATCACTgacttaaaaaaa
ctttattctcTTTGTTCACAGACGGGTACGCAGTTTGCAAGTATGGACCT
TGTTTGAATGGAGGTGTTTGTACAGCGCATCCAGATAAATATTATTGCAG
TTGTTTGCCTGGTTGGATCGGAACCAATTGTGAACGTAAGAAGCTCATTT
GATGAAATAAATTTGTTCTTAGTATGCAATCTCTTAATCACTAGAATCTG
ATGGGTTCTTGAGATTGCAATCTTCTCCATATTTGCACNGCTTAGTATGT
AGTCTCTTAATCACTAGAATCTGATGGGTTCTTGAGATTACAATCTTCTC
CATATTTGCACGATTCATTTATATTATATTTGCTTATTCCCGAGGTATCA
TAGAAAATCTTTCTAGCTAGCAACTATTGATTCAATTTCTGAATTAATTC
ACTtgtggtgtaaatgcatcgagatcGCTGGAGGATAGAAAGCCCATGTT
CCGAATCACGAGACCCTAGGTTTGGCTCCCACTACATAATAGTCTAGAAC
ATTTCACATTCTCTTAAAGGACGGAACGCGTGTTTTCCGAATCCATGTCA
TTACGGAATTTGTTCACCGAATATGGACGGGTTCACATGCACGTGCAAAG
CTGGATTCAAAGGGAATCTCTGTAATGGTGAgttctttttttctgtttta
cgTTTTGACGATCACGTGGAACATTCATTTTCTCGGCCGAATACCTAATT
ACACGAATCTTACTAGTCAAGTATTCAACGGCTTtaaaattaacacgcaa
aaaaacaacacgaattttatttgctttttcaaggacaccacagctggttt
taattaaaggGGTTTTAAATAACACGAAATTTCTTAATTCGTGTTAATTA
CATGTCTACTtattttcgtgtaataaggtaactTTAGAGTTTCATTTCAT
GAGCAAATTTTCTCAGTCAAAACGTTCTCTTTTCAAATTTGGGAATAGAG
TTGAACTGTCTTTGACAAGTTATTTTATTGGCTAATAGTGATTTTTGATC
ATGTTTTGTTTAGTTACGTAATAATAATTACATATATAACATAACATATA
TAACATGAAAGACCTCTATTTTCACGGCAAATAACTTCCAAGCTTGAATT
CCATCACACCAGCtaatcttttaaaatgtttaataACCTGATGGATCAGG
TCGGGTTATCGTGGTACATTGGTATAACCCGGGCAGTGAAATCCACTGTC
CTGCTTCTTACCCAAACTAGAATTATGCAACACCCATCCACTGTCCCGTT
TCGTACTCAAACTAGAATTATACCACACCCGTCCACTGTGGATGGGCGTA
GTgctgttccaattttttttgcgaagcgggacagtcaAGAAAAGTCGTTT
TGGGTGCGATGCGGGACAGTCAGAAGTGACGGAGAATtgttttggtctgt
aaaatttatgttGGGCACGAAGTTGCTTTCAGTGTCCGGGTCATACCCAT
GTACCACGCTAACCCGACCTGATCACAACAGTCAAACTAACAAGTCACTG
TTTTGCAAACTAAGATCAAAATAATAATTAGTGCAGTGAAAATAATTCCA
CTCAATCATTTCTTCCTACAGTACTGGATCATTGCCATCCGAATCCATGC
CATAACAACGGTTTGTGTACAGAAACACAACATGGTGTACAATGTGAATG
TTCACCTGGTTTCAAGGGAAGGCTCTGTGAAAGTAAGTATCATCTTGTTC
AATCCCTCTAATTTAGCCAACAACCAAGCGGTTACATTAAGACTCTCGCT
GTAGCCAAGTTGAAACCGTAGATAAGTCGGGTCAAAAACTTAAAAGTAAG
ATCTGACCGTACTGAATATTTTCAAGATTCCGATTTCCAACCTAATTTGG
ATTGTATTCGTTTGGATTNTTGTACGTGCAAAGCTGGATTCAAAGGGAAT
CTCTGTAATGGTGAGTTCTTTTTCTGTTTTACGTTTTGACGATCACGTGG
AACATTCATTTTCTCGGCCGAATACCTAATTACACGAATCTTACTAGTCA
AGTATTCAACGGTTTtaaaattaacacgcaaaaaaacaacacgaatttta
tttgctttttcaaggacaccacagctggttttaattaaaggGGTTTTAAA
TAACACGAAATTTCTTAATTCGTGTTAATTACATGTCTACTtattttcgt
gtaataaggtaactTTAGAGTTTCATTTCATGAGCAAATTTTCTCAGTCA
AAACGTTCTCTTTTCAAATTTGGGAATAGAGTTGAACTGTCTTTGACAAG
TTATTTTATTGGCTAATAGTGATTTTTGATCATGTTTTGTTTAGTTACGT
AATAATAATTACATATATAACATAACATATATAACATGAAAGACCTCTAT
TTTCACGGCAAATAACTTCCAAGCTTGAATTCCATCACACCAGCtaatct
tttaaaatgtttaataACCTGATGGATCAGGTCGGGTTATCGTGGTACAT
TGGTATAACCCGGGCAGTGAAATCCACTGTCCTGCTTCTTACCCAAACTA
GAATTATGCAACACCCATCCACTGTCCCGTTTCGTACTCAAACTAGAATT
ATACCACACCCGTCCACTGTGGATGGGCGTAGTgctgttccaattttttt
tgcgaagcgggacagtcaAGAAAAGTCGTTTTGGGTGCGATGCGGGACAG
TCAGAAGTGACGGAGAATtgttttggtctgtaaaatttatgttGGGCACG
AAGTTGCTTTCAGTGTCCGGGTCATACCCATGTACCACGCTAACCCGACC
TGATCACAACAGTCAAACTAACAAGTCACTGTTTTGCAAACTAAGATCAA
AATAATAATTAGTGCAGTGAAAATAATTCCACTCAATCATTTCTTCCTAC
AGTACTGGATCATTGCCATCCGAATCCATGCCATAACAACGGTTTGTGTA
CAGAAACACAACATGGTGTACAATGTGAATGTTCACCTGGTTTCAAGGGA
AGGCTCTGTGAAAGTAAGTATCATCTTGTTCAATCCCTCTAATTTAGCCA
ACAACCAAGCGGTTACATTAAGACTCTCGCTGTAGCCAAGTTGAAACCGT
AGATAAGTCGGGTCAAAAACTTAAAAGTAAGATCTGACCGTACTGAATAT
TTTCAAGATTCCGATTTCCAACCTAATTTGGATTGTATtcgtttggattt
ttttttgaacGTATCGGCAAGTATACAAGCTTAATCCTCTCTGGCGATCA
CACGCCAACTTTTTCGGACGGCACTAAATcttagaaaagtcaaaaaagaa
tCGCATAATAGATCAGCTAAAGATTAGATTTGGTGTTCACGTGCTCGTAG
ATAGGAAGTAACAAACCCTGACTCCGTTTAAGTCAACTCTTTTCTTTTAC
TAAACGTTTTAGTGGAATCAAAATGCGAGCCGATCAATCCATGCTTGAAT
GGAGGGACGTGTCGAGAATTTGTGGATCATTATTACTGCGCATGTCCGTT
GAGTTTCCGAGGTGTTAATTGTGAAGGTTCGTATTAGAGGAATTACTTTA
CAAATAGTTTTTTGTAATTCCAGAGCAAAGCTCAGTTTAAATGCAGTCAC
CCCAAGGTTTAAGAAGATATAATCAAAGCTAGTGGCAAAGCTAAAAGAAA
ATAGGAAGTGGTCTTTTTATGACCTCATCGCACGAAACCAAGAAAATCCA
GAAACTACAATctaaaaaagacgaaaaaactaTGCACAAAAGTCACCAAA
TTAGTACAATCTAGTTGGAATGTAACTATTAGCATCtagtcaaaatacaa
aatagcCAGTCTCAAAACAAAACTGCTCAACCAGTAACATTTCACCTTTT
CCTCATAGATTACATCAGCCCGACAAAGCCACCGCCTACCATTCCATTGA
AACAAGTTGGTCCACAGGCTATTCCCGCCCCAATGAACGCCCCAAATAGT
GACATCCGTGATGTTTTCACATACCGGTCTACGGATCAATACGGAAATCC
GTATTCGGAAACCCACGAAGAGATACGGAAAGGGCCGCAAGGGTTAGTAA
ACCCAGGCGCTAGTTTAGTTCCGCATCCAGTTGCGCTTGCTGCAATGAAT
GAAGCTCCAGGTACCCATTTTGTCGGAGCACCGAATCTTGCAGAACACGG
TGACGTCATCATGCATTCATCCCGGGAAGACGATAAAGCGGTTGTCAGTA
CATCAACAAGCGAAGACGAAATTAAAAATCTTCCGGAAAACATCAAAGAT
GACCGGTATCAAACACATTTCGTAGAAGTTGATAAGGATAATGAAGGTCA
TGAATACAAACATAAATCATTAAGTCATAACCATCTCCATGTGGGTGAAT
CAGTGGGCGTTGGTGAATACGCCCAACAAAAACACGCCCCTAATAATGAT
GAAGAGGCGGGGAAAGTGATTTCGGATGTAGAAAAACATCATGAAGAAAT
AAAGGAGAATTCGCATCAGCAACATGACCACGATGAACACATTTCAAACG
AAAAACACGTCCCACAGAATGTTTTTGTAGATCATTCATACCTCGATTTA
CCACACCACGCTCGTCAACATGAACAATCgagcaaaacgttcgaaacaaa
acaaactatCGAGGCACAAGCAAGCGAAAGATCAAAACTCGATCGACCAG
ATGCAGAAACATCAGAAATGAGCAAACAGAATTTAAATCGAAATGGTAGC
CCGAGTAGTGATGATGATAATAAAAGCAATATCAAAACAATAGGGGACAT
GTTAAAAATGTTTGACCAAGCTACAAAAACTCTTTCTACAAAGATCATTA
AAAGTGCTAATAAAGTCATGCTCAGAGAGGGAAAAGCACCTTACATACCA
CAAGTAGAAAAGTCGGGAAAATCAAACAGCAATCATCAATCCCGATCGGG
ACAAATCGGGAACGCAACACAATCCCCGTTTTCAgaaatgaaacatttta
tgCAGAATTTATATAATTTAACCAATAAAATCACAAACATTAACAACGCC
AAATCGGGTGTTGGGGCGTCGATGAAGGGCGTTAAGAAACACGCCCTAGG
CGCTACTGACGATCTATACAAACATTTTACAGACCATCAGAAAAATGCTT
ATACAAGCTGGAGACGGCAAGCATTGATCAACTACCATGCCCGTAATCCG
GGAAAACCGGTTCCCCGCAATACGGTCTCTTTGTCCGAGAATTCATTGTG
TCCGAAATTCTGCAGGTTATTTTGTGATCCGTGGTGCGTGAAGATTGGAT
GTTGTAAACTTTCACAGGAGAAGTTGAACATTTATAAAGAGATAGAGGAA
AAGCAAGAagcacatttaaaaaatacgAAACCGTCTGGACTTTTGTTGCC
CGATGAAGGTAGGAAGAAGGCTTGAAATAGTGtatatataccctggacaa
agtttCGCGATCacggtgaagaaaaaaagtttttttaatgtggtacccta
atggtagcctAGATATCTAAGCCAGTTTTCAGTCACTTGCTATAAAATAT
GAaagttaagttgtgactgaaatACTGTTATTCAGCGCTAACTTAAATTT
CACggatataaaaaaatcattaaagcacCGAAAACGCTATACATCTTTAT
ACAGTATATCGCGCGCTGTAATATCTGGCTTCATTAATCAGGccacccta
atggtagcacttaTCAAAGTTAGTGaacaattttaaacttttatttaaTT
ATAAACTGACCCACATCGAGTAgcgctaccattagggtaccacttttaaa
aaaacttcgatcaaagattgcCGATATAGCTTGGTCAAAGTAATACTGAC
CTTAGTGGGTTTTCCATGTTTtactaagttacgtaatttacacCATTACG
GAAGCGTTCGAATATGCAGAGGCGATAACTTgctttcataatggcggaaa
ttacgtaacttaatgAAACATAGAAAACCTATAAAGTGAACAAATCTTCA
CAACCTCCGCGAGGCCGTTTTCTAACGAAttggaaaaattacaaaaaagt
attttaattTACCTCATTTTGTTATGTAAATACGTCGTAATGAGAGAATT
CTTCTGTCAATTATAACTTCCAACATGCCTGAAAATATGAATTTATTATT
GAAGTAACAACATTTAGGAAAAAAACTTActacgttatatggacgttatg
aacatttagataaacgttgaaactaCGCTTCAACGCTTCAACGTGTCCAT
TTTTAATTATTGGCCAGAAGTTcatggagttatcaaaacagtACAAAATA
TAAGTTGCTTGTTGGAAATTTAgtccatttttgttttatttttcaatata
atCCTTTATTATAATCTTAATATATGATGAAAATTATGTcaacaaataaa
gaaaaaatcaaattttgaatatattttacaGTCGAAGAAAACGTACAGAC
GACAAAACGACAACATAATAACGACAATGACGTCACTTTAACACGACAAC
CGACGGCGACAAATAACGAGACTTTAAACGACAATTGTCGGAAATGTAAC
GAGAATGCAGACTGTGTACAGGGGAGTGAACAGAAAGGTTGTGTCTGTAA
ACCGGGGTTCAGCGGTGACGGAAAAGTGTGCACAGGTAAGTCAGACTACT
TTTCTTTTGAACTTTAAAATCTCTTGTCTTCGTCCAAGAATTTCACAGGC
CTCTATAAGCCACTGCACTGTTGCAGAATAGAGTTCTATATTAAACAGGT
TGAGGCCCCTACCACCAGGCAATTTTCATgagttttgtttttatgtttta
tattgataatattttcaagaattatcaaaaagggGATCCTAACATGGTCC
GGGGATTATAAAATACCAATTATTGGACACTTAGGGAAATTTTATCTTTG
GTCGGTAAAGATATTGCAAGAATAGAGTAGAGGTCCATCTGAAAGCTCTG
GGTAGTTCGGTGAagataccttaagagaagaaattttggcgactgaGCCC
ATTTgccaattttggtgcaatttgtcggaatttatttttaataaaatttc
taaatttggcgcTCGAATAAAATTTGGCGAAtgactaattttttttctca
atattttagctgaaaaaagaggaaaaaaaaaggtttttagaaGAAACAGA
GactaatttgaaagaaaattaaatttggcgagaatctGTTTTGGCGAGTG
ACCTATAAAGttaaattcgccaaaatttctttccttaaggCAGAGATTCT
TTCACCATAATAACCTACGTCCCGACTGGAAGTGATCGGGATTCGATTAC
AGTCCCTTGCCGTACAAGTCTGCAATTTAATCCTTCCTCTGGGTAGTTTT
TTCGTCGTTTACATAATTATGACTTTTTCCTTTCTACTAGTGGACACGTG
CATGTTATGTCATTTGGACGCTGAATGTGAGGGTGAAAGATGtttctgta
aaaataatttcgaaGGAGATGGATACGAGTGTCGACCTTTGCACGGTATG
TATTCTCATCTTCCAACAAGGTTCAGAAAAATGGTacacgtacacgtttt
tttataagaacatccaaacatTTTTAagccttggaatgttcttaacatgt
tcttatttttgctatttttttagtattttagccaattttcctacgaaatt
tggtcttcaaagccttcaaatgttgttaactttttcttaagattttggct
attgaagcctaatgttcttatatagtttattcttataagaaaacgtgtaa
caagtgatacttgtcttttataagcacacaAAATTTCGAGAACAGGCTCG
GAGATGCTTAGGACAAGGGCTTGACAgggctgaaaaatgcttataaggat
gaaaaatttgaaggaaATTCTGAAAATCCGAAACAATCCCAGCTAAAATc
aggaaaatacatttttttcgtaggctcaagctAATGCTTGGCAAATGCTT
ATATTtttgccatatctgagcctagatatgcttataagtgcattataaaa
aacatgtacctgGTTAATCTACAGAATATTAGACATATAATTGAAACAAT
TAAGACAGAAAACCCTAAAACCCTTATACTGTAGGCTcgtaaaaataata
aaaaaacccCTGGAATTTAAGATTCTCATCAATGTAAAATTGCCATCTAT
GCCATTCAATAGTCAATCAACGCCAATTATAGTAGGGGCCAACCCCAAAC
CCCAATTCCACCAATCAAAACCCGTTTTTAGAAAATTCGACTATAGAACA
TCGAGAGGGGGCAAAAGTTGTGACTGTAACGTCAGTTTATTGTCCATAAA
AACTTTTAACAGATCTAATTTGCGCCCCCTCTACTgaattataaaatatt
tcatcaatTTCACAATCACAAAAAGGAATTTCAGATTCTTTCAAAGacaa
ttttattttacttttctaGCCTCGAAACGGAACCAATGTTCAGATTGTCA
TTTAAAGGCTGATTGTACATCAGGAGAATGTGTTTGCAGTATGGGTTACT
ATGGAAACGGCAAAAATTGTTGGCCCATACCCATCATTTGAATATGAAAA
AGTAGATTCTTCTGGGCTACAGTTTTATCTAAATCTTCAAAACCATGATA
TGCNGATAGGAACTAACGCTCACTGGATATATGAAAAAGTTGATTCTTCT
GGGCTACAGTTTTATGTGAATCTTCAAAACCATATTGGCTACTTCAAAAT
ATACAGAATTGGGATTAACGCCGTCTGGATTCTATCTCATCTGCGCGCCA
GGATATTCGCTCCATTTATCACCACCAAAACATCTGTTTACAGTAAAACT
GCTTGTTGTTAGAATCGCTTAGGTGATGTCTAAGAGTCTAGGGCAAATTC
ATGTAATCTGAGACAAAAAACAGAAGCATTTTGTAAACCGCGTCCCCGTG
TGTctcaggctttatttacgttgaTGATTGACGCCAGggaattatctagc
gctatcagtaagaataaaaaagctgataatgcacagggaacgaggttggc
aTTTTGTGTATGGATAACATTGGTTTGTTTCGAATCGCTGAAATCCATGA
AGGATAATTCTTCTCCTCACtgggcaatatattgaaaatcgGAGACGATT
CACGGCTAATTAATGGAATCGCTATGAGACTAACCTAGCCTGTACCACCC
CGCCAACGGGTGTTTTTCATATATTTGGCAAACCGAACTTTATCTTTTTT
AGTCATCGAAGAAGAGTCTGGTACAGGCTAAGACTAACCCTattgaaaaa
acatttacacagCAACGTTTACGCAGTGAGTTGAATCGGCAATAAACTCA
TTTATCACAACAAGCTTTGATAATATGATGGaaatttttgtaatataatt
TTTTATGTTCTTGATGAAATGCATATACAGTAAAGTAAACAAAGGTTTGA
TAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006107XLOC_006107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010868-exon-sc0000118-1491911889:65466..65676TCONS_00010868-exon-sc0000118-1491911889:65466..65676Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:65466..65676TCONS_00010868-exon-sc0000118-1510915933:65466..65676Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:65466..65676TCONS_00010868-exon-sc0000118-1575043694:65466..65676Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:69487..69600TCONS_00010868-exon-sc0000118-1491911889:69487..69600Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:69487..69600TCONS_00010868-exon-sc0000118-1510915933:69487..69600Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:69487..69600TCONS_00010868-exon-sc0000118-1575043694:69487..69600Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:69985..70092TCONS_00010868-exon-sc0000118-1491911889:69985..70092Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:69985..70092TCONS_00010868-exon-sc0000118-1510915933:69985..70092Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:69985..70092TCONS_00010868-exon-sc0000118-1575043694:69985..70092Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:71037..71147TCONS_00010868-exon-sc0000118-1491911889:71037..71147Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:71037..71147TCONS_00010868-exon-sc0000118-1510915933:71037..71147Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:71037..71147TCONS_00010868-exon-sc0000118-1575043694:71037..71147Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:72828..72941TCONS_00010868-exon-sc0000118-1491911889:72828..72941Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:72828..72941TCONS_00010868-exon-sc0000118-1510915933:72828..72941Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:72828..72941TCONS_00010868-exon-sc0000118-1575043694:72828..72941Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:73274..74773TCONS_00010868-exon-sc0000118-1491911889:73274..74773Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:73274..74773TCONS_00010868-exon-sc0000118-1510915933:73274..74773Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:73274..74773TCONS_00010868-exon-sc0000118-1575043694:73274..74773Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:75797..76000TCONS_00010868-exon-sc0000118-1491911889:75797..76000Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:75797..76000TCONS_00010868-exon-sc0000118-1510915933:75797..76000Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:75797..76000TCONS_00010868-exon-sc0000118-1575043694:75797..76000Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:76756..76860TCONS_00010868-exon-sc0000118-1491911889:76756..76860Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:76756..76860TCONS_00010868-exon-sc0000118-1510915933:76756..76860Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:76756..76860TCONS_00010868-exon-sc0000118-1575043694:76756..76860Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1491911889:77785..78770TCONS_00010868-exon-sc0000118-1491911889:77785..78770Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1510915933:77785..78770TCONS_00010868-exon-sc0000118-1510915933:77785..78770Clytia hemisphaericaexon
TCONS_00010868-exon-sc0000118-1575043694:77785..78770TCONS_00010868-exon-sc0000118-1575043694:77785..78770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:65466..78770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0204889	0.0289501	0.00521927	0	2.61569e-06	6.31506e-06	0.0118539	1.84901	8.10543e-09	0.000457865	0.325413	3.57604	3.36607	6.43563	3.06692	0.0586991	0.21262	0	0.00724156	0.10437	3.43553	0.0569251	1.57607e-06	1.64151e-06	0.301154	0	0	0
Blast
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BLAST of TCONS_00010868 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.768e-28
Identity = 60/169 (35.50%), Postives = 79/169 (46.75%), Query Frame = 1 
Query:  226 CKYGPCLNGGVC---------------------TAHP-DKYYCSCLPGWIGTNCERR-NACFPNPCHYG-ICSPNMDGFTCTCKAGFKGNLCNV-LDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMESKCEPINPCLNGGTCREFVDHYYCACPLSFRGVNCE 657
            C +GPC NGG C                        P   + C CLPG+ G+ CE   + C P+PCH G  C   + GF+C+C  GF G  C   ++ C  +PC N  +C        C C  G+ G++CE        NPC NGG+C+  VD YYC CP    G +CE
Sbjct: 3806 CVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCE 3974

HSP 2 Score: 85.1149 bits (209), Expect = 2.429e-16
Identity = 42/112 (37.50%), Postives = 54/112 (48.21%), Query Frame = 1 
Query:  226 CKYGPCLNGGVCTAHPDKYYCSCLPGWIGTNCERR-NACFPNPCHYGICSPNMDG-FTCTCKAGFKGNLC-NVLDHCHPNPCHNNGLCTETQHGVQCECSPGFKGRLCEMES 552
            C   PC +GG C      + CSC  G+ G  CER  N C  +PC  G    N  G F C CK G+ G +C + +++C  NPC N G C        C C  G  G+ CE+ S
Sbjct: 3866 CLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELNS 3977
The following BLAST results are available for this feature:
BLAST of TCONS_00010868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT47.768e-2835.50Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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