TCONS_00010862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010862
Unique NameTCONS_00010862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010862 ID=TCONS_00010862|Name=TCONS_00010862|organism=Clytia hemisphaerica|type=transcript|length=807bp
CTCAAGGGTTCcaaaataatattgatttttcaagggtttcaaggaaattt
tcaaaGGCAGGAAAAAATTAAGGGTATTTACAGAGTTGGGAGGATTTCAA
GGGTCGCCGGCCACCATGgaatgttctttttatttagTCTAATAATATGG
CATACAAACGATCCGTAGCGCAAATAGATGATTGCGTCTCCGAGTTTTTT
ACAAAGGAAAACCCGAACGTCGGACTGGGCGTGGTAATCAAAAATTCGTC
CAGCTATAATTTGGAGTATGTAAATAATGGAGTGATTTCAGGGTGGTGTG
TGGAGCCAGTGGttcaaatgttttcaaaagatgtttatATGATCGAGCCA
GGTCAAGCAGGTGCATTAATGTGGCATAGGCATGGATGGGGTGAATTTGG
GAAATGGGTTGGCAATATCGCTAGTCTTGGCATAGCACATTCTGGCGCTC
AGAGTTACGTTGAAGGGTATATCTCAGTGAAGGCACGAACGCCTGGTAAA
AATCACATTGTCTGTCTCGGTTTTTCATTGGGAAGAAACAGATGTAATAA
ATGTGGGATTCAAATCCGTGGTGAAGATGGCGTCCTGGATGCGAATGGAA
ATGTTTCTGGACATGGGACCGACCCAACTGGTAATGTAACAGATATTAGT
GCACTGGCATATTCAGTTGCTTTCACAGAGTTTAATAAAGATTCAAGAGG
AATTTCATGGCACGAATTCAACGAAGAAACAAGAGCTTTGAGAATCAAAT
GCAAAATGAATAACGAGAACCATGGTGTCATCAACTTCGAAGTCTTTGAT
GGCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00010862-protein

>TCONS_00010862-protein ID=TCONS_00010862-protein|Name=TCONS_00010862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MAYKRSVAQIDDCVSEFFTKENPNVGLGVVIKNSSSYNLEYVNNGVISGW
CVEPVVQMFSKDVYMIEPGQAGALMWHRHGWGEFGKWVGNIASLGIAHSG
AQSYVEGYISVKARTPGKNHIVCLGFSLGRNRCNKCGIQIRGEDGVLDAN
GNVSGHGTDPTGNVTDISALAYSVAFTEFNKDSRGISWHEFNEETRALRI
KCKMNNENHGVINFEVFDGK
Run BLAST on NCBI

transcript from alignment at sc0000118:48091..49203+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010862 ID=TCONS_00010862|Name=TCONS_00010862|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at sc0000118:48091..49203+ (Clytia hemisphaerica)
CTCAAGGGTTCcaaaataatattgatttttcaagggtttcaaggaaattt tcaaaGGCAGGAAAAAATTAAGGGTATTTACAGAGTTGGGAGGATTTCAA GGGTCGCCGGCCACCATGgaatgttctttttatttagTCTAATAATATGG CATACAAACGATCCGTAGCGCAAATAGATGATTGCGTCTCCGAGTTTTTT ACAAAGGAAAACCCGAACGTCGGACTGGGCGTGGTAATCAAAAATTCGTC CAGCTATAATTTGGAGTATGTAAATAATGGAGTGATTTCAGGGTGGTGTG TGGAGCCAGTGGttcaaatgttttcaaaagatgtttatATGATCGAGCCA GGTCAAGCAGGTGCATTAATGTGGCATAGGCATGGATGGGGTGAATTTGG TATGTTATAAAATTCAGAACATTATCTACCCTAGATAGATATAGCGTTTT TAAGTCTGGTGTGATCATATTCAGACAGAACTTTCATAAGCAAAATATAG TCAACTTTCTCTTATTCTTACCTCTAATATTCGTATCTTTCCATAATCCG AACAAAAACATTACGCCACTTGCCCTTAGCTGGAAGGAGGTGTAAAAACT CTCCGTAATCCGAATCAAGAAGGTTTTTGCTTGAAGATCGAACTAGAGAG AATAAGCTGTATCCATGAACTTTCCATAACATCTATTTATCTTTATTTAC TTAAGGGAAATGGGTTGGCAATATCGCTAGTCTTGGCATAGCACATTCTG GCGCTCAGAGTTACGTTGAAGGGTATATCTCAGTGAAGGCACGAACGCCT GGTAAAAATCACATTGTCTGTCTCGGTTTTTCATTGGGAAGAAACAGATG TAATAAATGTGGGATTCAAATCCGTGGTGAAGATGGCGTCCTGGATGCGA ATGGAAATGTTTCTGGACATGGGACCGACCCAACTGGTAATGTAACAGAT ATTAGTGCACTGGCATATTCAGTTGCTTTCACAGAGTTTAATAAAGATTC AAGAGGAATTTCATGGCACGAATTCAACGAAGAAACAAGAGCTTTGAGAA TCAAATGCAAAATGAATAACGAGAACCATGGTGTCATCAACTTCGAAGTC TTTGATGGCAAAG

Coding sequence (CDS) from alignment at sc0000118:48091..49203+

>TCONS_00010862 ID=TCONS_00010862|Name=TCONS_00010862|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at sc0000118:48091..49203+ (Clytia hemisphaerica)
ATGGCATACAAACGATCCGTAGCGCAAATAGATGATTGCGTCTCCGAGTT
TTTTACAAAGGAAAACCCGAACGTCGGACTGGGCGTGGTAATCAAAAATT
CGTCCAGCTATAATTTGGAGTATGTAAATAATGGAGTGATTTCAGGGTGG
TGTGTGGAGCCAGTGGttcaaatgttttcaaaagatgtttatATGATCGA
GCCAGGTCAAGCAGGTGCATTAATGTGGCATAGGCATGGATGGGGTGAAT
TTGGGAAATGGGTTGGCAATATCGCTAGTCTTGGCATAGCACATTCTGGC
GCTCAGAGTTACGTTGAAGGGTATATCTCAGTGAAGGCACGAACGCCTGG
TAAAAATCACATTGTCTGTCTCGGTTTTTCATTGGGAAGAAACAGATGTA
ATAAATGTGGGATTCAAATCCGTGGTGAAGATGGCGTCCTGGATGCGAAT
GGAAATGTTTCTGGACATGGGACCGACCCAACTGGTAATGTAACAGATAT
TAGTGCACTGGCATATTCAGTTGCTTTCACAGAGTTTAATAAAGATTCAA
GAGGAATTTCATGGCACGAATTCAACGAAGAAACAAGAGCTTTGAGAATC
AAATGCAAAATGAATAACGAGAACCATGGTGTCATCAACTTCGAAGTCTT
TGATGGCAAAATGGCATACAAACGATCCGTAGCGCAAATAGATGATTGCG
TCTCCGAGTTTTTTACAAAGGAAAACCCGAACGTCGGACTGGGCGTGGTA
ATCAAAAATTCGTCCAGCTATAATTTGGAGTATGTAAATAATGGAGTGAT
TTCAGGGTGGTGTGTGGAGCCAGTGGttcaaatgttttcaaaagatgttt
atATGATCGAGCCAGGTCAAGCAGGTGCATTAATGTGGCATAGGCATGGA
TGGGGTGAATTTGGGAAATGGGTTGGCAATATCGCTAGTCTTGGCATAGC
ACATTCTGGCGCTCAGAGTTACGTTGAAGGGTATATCTCAGTGAAGGCAC
GAACGCCTGGTAAAAATCACATTGTCTGTCTCGGTTTTTCATTGGGAAGA
AACAGATGTAATAAATGTGGGATTCAAATCCGTGGTGAAGATGGCGTCCT
GGATGCGAATGGAAATGTTTCTGGACATGGGACCGACCCAACTGGTAATG
TAACAGATATTAGTGCACTGGCATATTCAGTTGCTTTCACAGAGTTTAAT
AAAGATTCAAGAGGAATTTCATGGCACGAATTCAACGAAGAAACAAGAGC
TTTGAGAATCAAATGCAAAATGAATAACGAGAACCATGGTGTCATCAACT
TCGAAGTCTTTGATGGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006103XLOC_006103Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010862-proteinTCONS_00010862-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010862-exon-sc0000118-1491911889:48091..48489TCONS_00010862-exon-sc0000118-1491911889:48091..48489Clytia hemisphaericaexon
TCONS_00010862-exon-sc0000118-1510915933:48091..48489TCONS_00010862-exon-sc0000118-1510915933:48091..48489Clytia hemisphaericaexon
TCONS_00010862-exon-sc0000118-1575043694:48091..48489TCONS_00010862-exon-sc0000118-1575043694:48091..48489Clytia hemisphaericaexon
TCONS_00010862-exon-sc0000118-1491911889:48796..49203TCONS_00010862-exon-sc0000118-1491911889:48796..49203Clytia hemisphaericaexon
TCONS_00010862-exon-sc0000118-1510915933:48796..49203TCONS_00010862-exon-sc0000118-1510915933:48796..49203Clytia hemisphaericaexon
TCONS_00010862-exon-sc0000118-1575043694:48796..49203TCONS_00010862-exon-sc0000118-1575043694:48796..49203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118supercontigsc0000118:48091..49203 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0671734 0 0.240019 0 0.533923 0.142815 0.199976 0.123851 0.721278 0.276582 0.0789135 0 0 0 0 0.0912976 0 0 0 0.0839361 0 0 0.318486 0.284241 0 0 0 0.0670894
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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