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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010849 ID=TCONS_00010849|Name=TCONS_00010849|organism=Clytia hemisphaerica|type=transcript|length=2814bp
tgaaattattgatGCGGTGGATTGATCTTAATTCATTTTGCATTTTCTGC
AAACCTAAATTCTATGTAACCTAGGTTATGTATGCAGCTTTAAATGTAGC
AATAATCATTTACTGATAATAAATCTCTACAGgaaatctttcttttcttt
cagcgAATTAATGGAGCCTTTGTCACCTGCGATGACGACTGCGTCGGACG
AAGCTCAAAGAGAACTACCATCTCCTATCTACACACCTGAACAACTCGAT
GATATGCAGTACGCGTTAGAAGAGCAACAAGAGCAGAATTATTCTACTGA
ATATCCACCTCCCCCTGACAATGAATCAGCCTCTAATCTTATCCCAACTC
CAACAATAGACGCCAGGACAATTTCTGCAAAAGCTAAAGTCAAAGCACCA
GCCAAAAGACGTGGTCGACCACCCAAGAACCCTGCTGATGTGAGGGATTG
GAGTGACGAAGAAGTAATGGTTTTAATCAATCTCTGGCAGACACACGAAA
GTCTTTATAACACTAGTCACGAACTTTATTACAACAGAGACATACGTCAA
ATTACAATCGATAGTGTCACTGCAAAATTaggtgaaaatggaataactgc
CACGTCCAAACAGGTGAATAAGAAGCTAACTGATCTAAGAACTTATTATG
GGGCCCAGAGAAGGATGGTCGAAGGCTCAAAAGACGGTACTGGGAAAGGA
ACAGCTACGTTATATGTTTCTCCATGGAAATTTTTCGACTCGTTGCATTT
TTTACGAGACTCGTTTACACCACGTCAGACAACAAGCAATGCACCAAAAG
ATTTGGTTGGTAGTTCTGGCAGTACATCTACAGTTAATATTTCAGCCTAC
AATGAAAACAATGCACCTTCAGCAAAATCACTGAAATTGATGAAAGATGC
AGAAACTAAGAACTTACATCAAGTAATGGCAAATGCTACAAATTTATTGG
GTCAACTTGCTCAACCTAAAGAAAAACCTGCCCAAGTTCAAAAGGATCAA
GACGACTATTTTTGTGACTTGATAAGATCGATGATAGGAACAGTTCCAGA
GACTGATTTGAAATCAAACATGCGATTGGAGATCCAGCAAGTTATCTTGA
ACTATAAGCGTATGATTGCTAGTCAAAACGTATGATTACTAAATAAacgt
ttttgaaactttaacttgttcttgtaGTTGTTACTTAGCATAGCTTCTTT
tgtatttgaaaaaagaaaagtaaagtatcttttgttttaatttatatgtc
tttttacttaaaaatcagaaaatataatAGTAGCTGTATTTACAAAGACT
GCGATTTTGCCTCTGAAAATCTTAGAAATATCTTTAATCTGATACTAAAT
CATATTCCACTGCCATTGAACTTGTCCAGGTCCAAAAAAATGATCAGCAA
ACATTTCTCGAACTTGGCTAGCTGTACGGTTATACGCGTTGTTTCTTCTA
TTTCGTTGCAATTCGAGGAAAGCCAAGTCAGCTAAATTTTGCTCACGCCA
TGCTCCTTCAGTTACTTCGCCGGTTTCTTCGTTGACTTCGTCGATAAAGC
CCTCTGGTGTATAAGAGTCGGTTGAGAGTTCCCTAAGCATATTATGAATT
ACAAGTGAAGCAAGTGTGATCGTTACAGCCTTGTCAGGATCAAGTGGGAT
TTTGGtcaaaaagattcgaaatctACTTGCCAAAATGCCGAATGCATTTT
CAGTAACTCTCCGGAAACGAGATAGACGATAGTTGAAAACACGACTTCTA
AGTGTAAGGCCTTGTTGACTGTAAGGTTTTAGACAGTGAATACCCAAAGG
AAAAGCTTCATCTCCAACAAATACATAAGGAACAGGGACTGATTCATGAT
TAATGTAATTGGGATCGTTAGAACTTGGCAGTAATCTTGGCTCAGGAATA
CCCAGATTACCGCTTTCTAATGCCTTATAGAAGGAACAATTTCGGTAAAC
GCCCCCGTCACTAATACGCCCTTGACAGCCAACGTCTGCAAAAATGAATT
TGTAATCGTGATCAACAAGTGCCAGTAGAACAATGGAGAAGAAACCTTTG
TAATTGTAAAATTCGGACCCACTCCCTTTCTGGTGGGCAATTGCAATATG
TTTCCCATCTGCTGCCCCAAAACAGTTAGGGAACTGCCAACGATCCTCTA
CTTGTTTCGTGATCTTAAGCCATTCAGCAGGATTGGATGGTAAAGACATA
TACCTTCCCTTCAAAGTTTTCCATATAACGTCACACACCTCAGGAATGAA
AATGCTGATAGTGCTTTCGTGTACTCGAAACTGGTATTGAAGGGATTCGT
ATGACTCTCCAGTTGCTAGAAAACGCAAGGTGATAGCAAGCTTCTGATCA
GCTGATATAGGGTTTCGCATCAGTGTTGTTTGTTTGGTAATGAACGGTCG
AATGTGGGAAAGCAGCTCCTAGTAAAAGGAAATGTGGACCATTTAAGACA
CGTCGCAAAGattggaaaaaaatctgaaaagttGATACAAGAATGATGAT
ACACGATCAAAGCCTCTGATAAAATGCTTTCTTCGGTAAAAAATTTATGA
CTTCTTTAGTTCTTACCTGGAAAGTAGCAGTATTCATTCGCAGAAATTTT
CTATAGTTTTCACTATCAGTGAGTTTAAGCTCATTAAGGATATTATTATA
AGCTcctttctcttctctttttaaAAGCCATTCCTTCACCCAAATCGTtc
tgtttcttcttttcttcacttttcttttcaaaagttcAGCACTACAAACG
ATCACAAGAGTTGCACAAGCAGCAGCACAAACCTTCTCCTGCTCATCCAT
TATTGTAAATGAGG Run BLAST on NCBI protein sequence of TCONS_00010849-protein >TCONS_00010849-protein ID=TCONS_00010849-protein|Name=TCONS_00010849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MRNPISADQKLAITLRFLATGESYESLQYQFRVHESTISIFIPEVCDVIW
KTLKGRYMSLPSNPAEWLKITKQVEDRWQFPNCFGAADGKHIAIAHQKGS
GSEFYNYKGFFSIVLLALVDHDYKFIFADVGCQGRISDGGVYRNCSFYKA
LESGNLGIPEPRLLPSSNDPNYINHESVPVPYVFVGDEAFPLGIHCLKPY
SQQGLTLRSRVFNYRLSRFRRVTENAFGILASRFRIFLTKIPLDPDKAVT
ITLASLVIHNMLRELSTDSYTPEGFIDEVNEETGEVTEGAWREQNLADLA
FLELQRNRRNNAYNRTASQVREMFADHFFGPGQVQWQWNMI Run BLAST on NCBI transcript from alignment at sc0000117:487671..490484 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010849 ID=TCONS_00010849|Name=TCONS_00010849|organism=Clytia hemisphaerica|type=transcript|length=2814bp|location=Sequence derived from alignment at sc0000117:487671..490484 (Clytia hemisphaerica)
CCTCATTTACAATAATGGATGAGCAGGAGAAGGTTTGTGCTGCTGCTTGT
GCAACTCTTGTGATCGTTTGTAGTGCTgaacttttgaaaagaaaagtgaa
gaaaagaagaaacagaACGATTTGGGTGAAGGAATGGCTTttaaaaagag
aagagaaaggAGCTTATAATAATATCCTTAATGAGCTTAAACTCACTGAT
AGTGAAAACTATAGAAAATTTCTGCGAATGAATACTGCTACTTTCCAGGT
AAGAACTAAAGAAGTCATAAATTTTTTACCGAAGAAAGCATTTTATCAGA
GGCTTTGATCGTGTATCATCATTCTTGTATCaacttttcagatttttttc
caatCTTTGCGACGTGTCTTAAATGGTCCACATTTCCTTTTACTAGGAGC
TGCTTTCCCACATTCGACCGTTCATTACCAAACAAACAACACTGATGCGA
AACCCTATATCAGCTGATCAGAAGCTTGCTATCACCTTGCGTTTTCTAGC
AACTGGAGAGTCATACGAATCCCTTCAATACCAGTTTCGAGTACACGAAA
GCACTATCAGCATTTTCATTCCTGAGGTGTGTGACGTTATATGGAAAACT
TTGAAGGGAAGGTATATGTCTTTACCATCCAATCCTGCTGAATGGCTTAA
GATCACGAAACAAGTAGAGGATCGTTGGCAGTTCCCTAACTGTTTTGGGG
CAGCAGATGGGAAACATATTGCAATTGCCCACCAGAAAGGGAGTGGGTCC
GAATTTTACAATTACAAAGGTTTCTTCTCCATTGTTCTACTGGCACTTGT
TGATCACGATTACAAATTCATTTTTGCAGACGTTGGCTGTCAAGGGCGTA
TTAGTGACGGGGGCGTTTACCGAAATTGTTCCTTCTATAAGGCATTAGAA
AGCGGTAATCTGGGTATTCCTGAGCCAAGATTACTGCCAAGTTCTAACGA
TCCCAATTACATTAATCATGAATCAGTCCCTGTTCCTTATGTATTTGTTG
GAGATGAAGCTTTTCCTTTGGGTATTCACTGTCTAAAACCTTACAGTCAA
CAAGGCCTTACACTTAGAAGTCGTGTTTTCAACTATCGTCTATCTCGTTT
CCGGAGAGTTACTGAAAATGCATTCGGCATTTTGGCAAGTagatttcgaa
tctttttgaCCAAAATCCCACTTGATCCTGACAAGGCTGTAACGATCACA
CTTGCTTCACTTGTAATTCATAATATGCTTAGGGAACTCTCAACCGACTC
TTATACACCAGAGGGCTTTATCGACGAAGTCAACGAAGAAACCGGCGAAG
TAACTGAAGGAGCATGGCGTGAGCAAAATTTAGCTGACTTGGCTTTCCTC
GAATTGCAACGAAATAGAAGAAACAACGCGTATAACCGTACAGCTAGCCA
AGTTCGAGAAATGTTTGCTGATCATTTTTTTGGACCTGGACAAGTTCAAT
GGCAGTGGAATATGATTTAGTATCAGATTAAAGATATTTCTAAGATTTTC
AGAGGCAAAATCGCAGTCTTTGTAAATACAGCTACTattatattttctga
tttttaagtaaaaagacatataaattaaaacaaaagatactttacttttc
ttttttcaaatacaAAAGAAGCTATGCTAAGTAACAACtacaagaacaag
ttaaagtttcaaaaacgtTTATTTAGTAATCATACGTTTTGACTAGCAAT
CATACGCTTATAGTTCAAGATAACTTGCTGGATCTCCAATCGCATGTTTG
ATTTCAAATCAGTCTCTGGAACTGTTCCTATCATCGATCTTATCAAGTCA
CAAAAATAGTCGTCTTGATCCTTTTGAACTTGGGCAGGTTTTTCTTTAGG
TTGAGCAAGTTGACCCAATAAATTTGTAGCATTTGCCATTACTTGATGTA
AGTTCTTAGTTTCTGCATCTTTCATCAATTTCAGTGATTTTGCTGAAGGT
GCATTGTTTTCATTGTAGGCTGAAATATTAACTGTAGATGTACTGCCAGA
ACTACCAACCAAATCTTTTGGTGCATTGCTTGTTGTCTGACGTGGTGTAA
ACGAGTCTCGTAAAAAATGCAACGAGTCGAAAAATTTCCATGGAGAAACA
TATAACGTAGCTGTTCCTTTCCCAGTACCGTCTTTTGAGCCTTCGACCAT
CCTTCTCTGGGCCCCATAATAAGTTCTTAGATCAGTTAGCTTCTTATTCA
CCTGTTTGGACGTGgcagttattccattttcacctAATTTTGCAGTGACA
CTATCGATTGTAATTTGACGTATGTCTCTGTTGTAATAAAGTTCGTGACT
AGTGTTATAAAGACTTTCGTGTGTCTGCCAGAGATTGATTAAAACCATTA
CTTCTTCGTCACTCCAATCCCTCACATCAGCAGGGTTCTTGGGTGGTCGA
CCACGTCTTTTGGCTGGTGCTTTGACTTTAGCTTTTGCAGAAATTGTCCT
GGCGTCTATTGTTGGAGTTGGGATAAGATTAGAGGCTGATTCATTGTCAG
GGGGAGGTGGATATTCAGTAGAATAATTCTGCTCTTGTTGCTCTTCTAAC
GCGTACTGCATATCATCGAGTTGTTCAGGTGTGTAGATAGGAGATGGTAG
TTCTCTTTGAGCTTCGTCCGACGCAGTCGTCATCGCAGGTGACAAAGGCT
CCATTAATTcgctgaaagaaaagaaagatttcCTGTAGAGATTTATTATC
AGTAAATGATTATTGCTACATTTAAAGCTGCATACATAACCTAGGTTACA
TAGAATTTAGGTTTGCAGAAAATGCAAAATGAATTAAGATCAATCCACCG
Catcaataatttca Coding sequence (CDS) from alignment at sc0000117:487671..490484 >TCONS_00010849 ID=TCONS_00010849|Name=TCONS_00010849|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000117:487671..490484 (Clytia hemisphaerica)
ATGCGAAACCCTATATCAGCTGATCAGAAGCTTGCTATCACCTTGCGTTT
TCTAGCAACTGGAGAGTCATACGAATCCCTTCAATACCAGTTTCGAGTAC
ACGAAAGCACTATCAGCATTTTCATTCCTGAGGTGTGTGACGTTATATGG
AAAACTTTGAAGGGAAGGTATATGTCTTTACCATCCAATCCTGCTGAATG
GCTTAAGATCACGAAACAAGTAGAGGATCGTTGGCAGTTCCCTAACTGTT
TTGGGGCAGCAGATGGGAAACATATTGCAATTGCCCACCAGAAAGGGAGT
GGGTCCGAATTTTACAATTACAAAGGTTTCTTCTCCATTGTTCTACTGGC
ACTTGTTGATCACGATTACAAATTCATTTTTGCAGACGTTGGCTGTCAAG
GGCGTATTAGTGACGGGGGCGTTTACCGAAATTGTTCCTTCTATAAGGCA
TTAGAAAGCGGTAATCTGGGTATTCCTGAGCCAAGATTACTGCCAAGTTC
TAACGATCCCAATTACATTAATCATGAATCAGTCCCTGTTCCTTATGTAT
TTGTTGGAGATGAAGCTTTTCCTTTGGGTATTCACTGTCTAAAACCTTAC
AGTCAACAAGGCCTTACACTTAGAAGTCGTGTTTTCAACTATCGTCTATC
TCGTTTCCGGAGAGTTACTGAAAATGCATTCGGCATTTTGGCAAGTagat
ttcgaatctttttgaCCAAAATCCCACTTGATCCTGACAAGGCTGTAACG
ATCACACTTGCTTCACTTGTAATTCATAATATGCTTAGGGAACTCTCAAC
CGACTCTTATACACCAGAGGGCTTTATCGACGAAGTCAACGAAGAAACCG
GCGAAGTAACTGAAGGAGCATGGCGTGAGCAAAATTTAGCTGACTTGGCT
TTCCTCGAATTGCAACGAAATAGAAGAAACAACGCGTATAACCGTACAGC
TAGCCAAGTTCGAGAAATGTTTGCTGATCATTTTTTTGGACCTGGACAAG
TTCAATGGCAGTGGAATATGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010849-exon-sc0000117-1491911889:487671..490484 | TCONS_00010849-exon-sc0000117-1491911889:487671..490484 | Clytia hemisphaerica | exon |
| TCONS_00010849-exon-sc0000117-1510915933:487671..490484 | TCONS_00010849-exon-sc0000117-1510915933:487671..490484 | Clytia hemisphaerica | exon |
| TCONS_00010849-exon-sc0000117-1575043694:487671..490484 | TCONS_00010849-exon-sc0000117-1575043694:487671..490484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:487671..490484 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027806 | HARBI1_dom |
Blast
The following BLAST results are available for this feature:
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