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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010847 ID=TCONS_00010847|Name=TCONS_00010847|organism=Clytia hemisphaerica|type=transcript|length=1820bp
ATGGAAGAAGCCAATCTATTGGTCCTGGTTTTCTTAgcgctcatattttt
catttcaattatcACAAATCTTCTTCTCCTAATCTTCACCATCAAAATCT
ACAAACGTGAACTCGCTTCCAATTTCTACATCAGTGGAATATGCTTAGCA
GACATGTTATCAGCAACTTTTGGAATCATTCCTGAATTCATtgtaaatta
cagaccagatttTATTGACGATAGCAATCTTCTTTGTATATCAGCTGGAC
TCATAACACTGGCTTTCTGTATAGTCACTAtaaatttatttggaatttta
gCCTTTGTTCAAGCTTTAGCAATTATCAAACCATTTGTTTATCGTAGATA
CTTTACTCAAGCTCTAAATAACATATTGATCGTCCTTGCTGTGATAATAT
ACGGATTATTTTGGGCTGTGTTACCTTATTCTATGAACTCGAAATATGTC
CCTGATCTAGACGGGAGACGCTGTTCGCTAGACTGGAAGGACAAGGACAT
GAAATACTATATAATTGCGTGCACAGTTATTGGGCTATTTGTCCCTGTCG
GAACGCAGATTATATCATTATTCAAATCGAGAAGACAGTTAATGAAGCGC
AAAAATGAAGCACATGCGAAACGTATACTTGGATATGAGAAATTCTACAT
AAAAATTAGCACAATCATAGTTACTGTGTTTCTAATGGTATGGACTCCGT
ATACCGTGGTAGGATTTATGATCGTGTTCGGATACTACCCGTCCAAAATT
GCGTTCACAGTGTGTGCTATGAGTGCTAAATTAGCAACTCTATGTAACCC
CGTCGTCTATTATTGTTATAGTCAACGTTTTAAGAGATTCGTCAGACAAA
TTTTGACGTTAAAATGGTGCGACCCTGACGATGATTTACAGCTCAAAAGA
ACGTCTGTCGAACGGCAAACTTCAATCACGTCGACAATGTGTGCCGTTAT
TGCTAATGCCGGTGTTTATTTACCAACTATACCAGAAAGCCAAGGGGATT
CACCTCAAATAGTGAAAAATACTAATTTCAAAGAGAATGGTAATGGTTTA
GTCGAAGATTAATGATTTATTTGTTTAACACCCAGGAATCATAAACAATA
CatgcgtttttttataaaagtgtcaaaaaGATTTGATGGCTTTAGATGTA
CATTTTTAATACGTTGagtttaaaagcctaaaatgCTCTTATGATTCTTA
TTTTCTAGTATACTGTGTTAAAGTCTATGCCTCAATCTTAATAAGTTTGG
TTTCGTTGGGAAGGTAGGAAGGAGCTTCAAATTTCTAAATACCTATATTT
cctagtaaaagtatatatttttgaaattgccaagctttaagctttccaaa
gatgtaaaaataaCGTTTATACGACCTATCTATAAAAAGTTGAATGTCAT
TTTTCTTCAcgttcttttcaaatttcacggAAAAACTAAACAGTAAATTA
ATAAGTTCCTTCCTAGCTTCccaacgataccaaactttttaagattgaaG
CATTGGTTGAGAAATAACAAGCAAAGCTAAAgttagtgcacacttatcgt
gaatagactttagtatttttgtctattctCAAAGAAATTGCTAACTATAG
GATCTACCAAGGATTCAACGTGCATTGAACGCTAATAACATAAAAAACGC
TTCATGCCATGCTTGATAATGGtgttgttcaatttttttattagaattta
gattATCATTAAATCGCTTCATCATTGTATTTGTAGAATATAAATTTATa
taagtaaaaaaatatatatagcgAAAGATTGATTTGAAAGTATTTCTAGA
CTACATTTCTTGTCCCTTCT Run BLAST on NCBI protein sequence of opsin 4 >TCONS_00010847-protein ID=TCONS_00010847-protein|Name=opsin 4|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MEEANLLVLVFLALIFFISIITNLLLLIFTIKIYKRELASNFYISGICLA
DMLSATFGIIPEFIVNYRPDFIDDSNLLCISAGLITLAFCIVTINLFGIL
AFVQALAIIKPFVYRRYFTQALNNILIVLAVIIYGLFWAVLPYSMNSKYV
PDLDGRRCSLDWKDKDMKYYIIACTVIGLFVPVGTQIISLFKSRRQLMKR
KNEAHAKRILGYEKFYIKISTIIVTVFLMVWTPYTVVGFMIVFGYYPSKI
AFTVCAMSAKLATLCNPVVYYCYSQRFKRFVRQILTLKWCDPDDDLQLKR
TSVERQTSITSTMCAVIANAGVYLPTIPESQGDSPQIVKNTNFKENGNGL
VED Run BLAST on NCBI transcript from alignment at sc0000117:463940..465759 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010847 ID=TCONS_00010847|Name=TCONS_00010847|organism=Clytia hemisphaerica|type=transcript|length=1820bp|location=Sequence derived from alignment at sc0000117:463940..465759 (Clytia hemisphaerica)
AGAAGGGACAAGAAATGTAGTCTAGAAATACTTTCAAATCAATCTTTcgc
tatatatatttttttacttatATAAATTTATATTCTACAAATACAATGAT
GAAGCGATTTAATGATaatctaaattctaataaaaaaattgaacaacaCC
ATTATCAAGCATGGCATGAAGCGTTTTTTATGTTATTAGCGTTCAATGCA
CGTTGAATCCTTGGTAGATCCTATAGTTAGCAATTTCTTTGagaatagac
aaaaatactaaagtctattcacgataagtgtgcactaacTTTAGCTTTGC
TTGTTATTTCTCAACCAATGCttcaatcttaaaaagtttggtatcgttgg
GAAGCTAGGAAGGAACTTATTAATTTACTGTTTAGTTTTTccgtgaaatt
tgaaaagaacgTGAAGAAAAATGACATTCAACTTTTTATAGATAGGTCGT
ATAAACGttatttttacatctttggaaagcttaaagcttggcaatttcaa
aaatatatacttttactaggAAATATAGGTATTTAGAAATTTGAAGCTCC
TTCCTACCTTCCCAACGAAACCAAACTTATTAAGATTGAGGCATAGACTT
TAACACAGTATACTAGAAAATAAGAATCATAAGAGcattttaggctttta
aactCAACGTATTAAAAATGTACATCTAAAGCCATCAAATCtttttgaca
cttttataaaaaaacgcatGTATTGTTTATGATTCCTGGGTGTTAAACAA
ATAAATCATTAATCTTCGACTAAACCATTACCATTCTCTTTGAAATTAGT
ATTTTTCACTATTTGAGGTGAATCCCCTTGGCTTTCTGGTATAGTTGGTA
AATAAACACCGGCATTAGCAATAACGGCACACATTGTCGACGTGATTGAA
GTTTGCCGTTCGACAGACGTTCTTTTGAGCTGTAAATCATCGTCAGGGTC
GCACCATTTTAACGTCAAAATTTGTCTGACGAATCTCTTAAAACGTTGAC
TATAACAATAATAGACGACGGGGTTACATAGAGTTGCTAATTTAGCACTC
ATAGCACACACTGTGAACGCAATTTTGGACGGGTAGTATCCGAACACGAT
CATAAATCCTACCACGGTATACGGAGTCCATACCATTAGAAACACAGTAA
CTATGATTGTGCTAATTTTTATGTAGAATTTCTCATATCCAAGTATACGT
TTCGCATGTGCTTCATTTTTGCGCTTCATTAACTGTCTTCTCGATTTGAA
TAATGATATAATCTGCGTTCCGACAGGGACAAATAGCCCAATAACTGTGC
ACGCAATTATATAGTATTTCATGTCCTTGTCCTTCCAGTCTAGCGAACAG
CGTCTCCCGTCTAGATCAGGGACATATTTCGAGTTCATAGAATAAGGTAA
CACAGCCCAAAATAATCCGTATATTATCACAGCAAGGACGATCAATATGT
TATTTAGAGCTTGAGTAAAGTATCTACGATAAACAAATGGTTTGATAATT
GCTAAAGCTTGAACAAAGGctaaaattccaaataaatttaTAGTGACTAT
ACAGAAAGCCAGTGTTATGAGTCCAGCTGATATACAAAGAAGATTGCTAT
CGTCAATAaaatctggtctgtaatttacaATGAATTCAGGAATGATTCCA
AAAGTTGCTGATAACATGTCTGCTAAGCATATTCCACTGATGTAGAAATT
GGAAGCGAGTTCACGTTTGTAGATTTTGATGGTGAAGATTAGGAGAAGAA
GATTTGTgataattgaaatgaaaaatatgagcgcTAAGAAAACCAGGACC
AATAGATTGGCTTCTTCCAT Coding sequence (CDS) from alignment at sc0000117:463940..465759 >TCONS_00010847 ID=TCONS_00010847|Name=TCONS_00010847|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000117:463940..465759 (Clytia hemisphaerica)
TTAATCTTCGACTAAACCATTACCATTCTCTTTGAAATTAGTATTTTTCA
CTATTTGAGGTGAATCCCCTTGGCTTTCTGGTATAGTTGGTAAATAAACA
CCGGCATTAGCAATAACGGCACACATTGTCGACGTGATTGAAGTTTGCCG
TTCGACAGACGTTCTTTTGAGCTGTAAATCATCGTCAGGGTCGCACCATT
TTAACGTCAAAATTTGTCTGACGAATCTCTTAAAACGTTGACTATAACAA
TAATAGACGACGGGGTTACATAGAGTTGCTAATTTAGCACTCATAGCACA
CACTGTGAACGCAATTTTGGACGGGTAGTATCCGAACACGATCATAAATC
CTACCACGGTATACGGAGTCCATACCATTAGAAACACAGTAACTATGATT
GTGCTAATTTTTATGTAGAATTTCTCATATCCAAGTATACGTTTCGCATG
TGCTTCATTTTTGCGCTTCATTAACTGTCTTCTCGATTTGAATAATGATA
TAATCTGCGTTCCGACAGGGACAAATAGCCCAATAACTGTGCACGCAATT
ATATAGTATTTCATGTCCTTGTCCTTCCAGTCTAGCGAACAGCGTCTCCC
GTCTAGATCAGGGACATATTTCGAGTTCATAGAATAAGGTAACACAGCCC
AAAATAATCCGTATATTATCACAGCAAGGACGATCAATATGTTATTTAGA
GCTTGAGTAAAGTATCTACGATAAACAAATGGTTTGATAATTGCTAAAGC
TTGAACAAAGGctaaaattccaaataaatttaTAGTGACTATACAGAAAG
CCAGTGTTATGAGTCCAGCTGATATACAAAGAAGATTGCTATCGTCAATA
aaatctggtctgtaatttacaATGAATTCAGGAATGATTCCAAAAGTTGC
TGATAACATGTCTGCTAAGCATATTCCACTGATGTAGAAATTGGAAGCGA
GTTCACGTTTGTAGATTTTGATGGTGAAGATTAGGAGAAGAAGATTTGTg
ataattgaaatgaaaaatatgagcgcTAAGAAAACCAGGACCAATAGATT
GGCTTCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010847-exon-sc0000117-1491911889:463940..465759 | TCONS_00010847-exon-sc0000117-1491911889:463940..465759 | Clytia hemisphaerica | exon |
| TCONS_00010847-exon-sc0000117-1510915933:463940..465759 | TCONS_00010847-exon-sc0000117-1510915933:463940..465759 | Clytia hemisphaerica | exon |
| TCONS_00010847-exon-sc0000117-1575043694:463940..465759 | TCONS_00010847-exon-sc0000117-1575043694:463940..465759 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:463940..465759 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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