XLOC_006088 (gene) - C. hemisphaerica

Overview
NameXLOC_006088
Unique NameXLOC_006088
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000117:463940..465759-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006088 ID=XLOC_006088|Name=XLOC_006088|organism=Clytia hemisphaerica|type=gene|length=1820bp|location=Sequence derived from alignment at sc0000117:463940..465759- (Clytia hemisphaerica)
ATGGAAGAAGCCAATCTATTGGTCCTGGTTTTCTTAGCGCTCATATTTTT
CATTTCAATTATCACAAATCTTCTTCTCCTAATCTTCACCATCAAAATCT
ACAAACGTGAACTCGCTTCCAATTTCTACATCAGTGGAATATGCTTAGCA
GACATGTTATCAGCAACTTTTGGAATCATTCCTGAATTCATTGTAAATTA
CAGACCAGATTTTATTGACGATAGCAATCTTCTTTGTATATCAGCTGGAC
TCATAACACTGGCTTTCTGTATAGTCACTATAAATTTATTTGGAATTTTA
GCCTTTGTTCAAGCTTTAGCAATTATCAAACCATTTGTTTATCGTAGATA
CTTTACTCAAGCTCTAAATAACATATTGATCGTCCTTGCTGTGATAATAT
ACGGATTATTTTGGGCTGTGTTACCTTATTCTATGAACTCGAAATATGTC
CCTGATCTAGACGGGAGACGCTGTTCGCTAGACTGGAAGGACAAGGACAT
GAAATACTATATAATTGCGTGCACAGTTATTGGGCTATTTGTCCCTGTCG
GAACGCAGATTATATCATTATTCAAATCGAGAAGACAGTTAATGAAGCGC
AAAAATGAAGCACATGCGAAACGTATACTTGGATATGAGAAATTCTACAT
AAAAATTAGCACAATCATAGTTACTGTGTTTCTAATGGTATGGACTCCGT
ATACCGTGGTAGGATTTATGATCGTGTTCGGATACTACCCGTCCAAAATT
GCGTTCACAGTGTGTGCTATGAGTGCTAAATTAGCAACTCTATGTAACCC
CGTCGTCTATTATTGTTATAGTCAACGTTTTAAGAGATTCGTCAGACAAA
TTTTGACGTTAAAATGGTGCGACCCTGACGATGATTTACAGCTCAAAAGA
ACGTCTGTCGAACGGCAAACTTCAATCACGTCGACAATGTGTGCCGTTAT
TGCTAATGCCGGTGTTTATTTACCAACTATACCAGAAAGCCAAGGGGATT
CACCTCAAATAGTGAAAAATACTAATTTCAAAGAGAATGGTAATGGTTTA
GTCGAAGATTAATGATTTATTTGTTTAACACCCAGGAATCATAAACAATA
CATGCGTTTTTTTATAAAAGTGTCAAAAAGATTTGATGGCTTTAGATGTA
CATTTTTAATACGTTGAGTTTAAAAGCCTAAAATGCTCTTATGATTCTTA
TTTTCTAGTATACTGTGTTAAAGTCTATGCCTCAATCTTAATAAGTTTGG
TTTCGTTGGGAAGGTAGGAAGGAGCTTCAAATTTCTAAATACCTATATTT
CCTAGTAAAAGTATATATTTTTGAAATTGCCAAGCTTTAAGCTTTCCAAA
GATGTAAAAATAACGTTTATACGACCTATCTATAAAAAGTTGAATGTCAT
TTTTCTTCACGTTCTTTTCAAATTTCACGGAAAAACTAAACAGTAAATTA
ATAAGTTCCTTCCTAGCTTCCCAACGATACCAAACTTTTTAAGATTGAAG
CATTGGTTGAGAAATAACAAGCAAAGCTAAAGTTAGTGCACACTTATCGT
GAATAGACTTTAGTATTTTTGTCTATTCTCAAAGAAATTGCTAACTATAG
GATCTACCAAGGATTCAACGTGCATTGAACGCTAATAACATAAAAAACGC
TTCATGCCATGCTTGATAATGGTGTTGTTCAATTTTTTTATTAGAATTTA
GATTATCATTAAATCGCTTCATCATTGTATTTGTAGAATATAAATTTATA
TAAGTAAAAAAATATATATAGCGAAAGATTGATTTGAAAGTATTTCTAGA
CTACATTTCTTGTCCCTTCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010847TCONS_00010847Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
opsin 4TCONS_00010847-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:463940..465759 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
OPN3opsin-3 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11	0.11	0.2	0.15	0.27	0.09	0.17	0.21	0.22	0.11	0	0.29	0.21	0.11	0.24	0.2	1.95	1.59	0.19	0.39	2.15	2.37	2.15	2.98	3.38	5.97	4.86	3.96	0.68	0.47