TCONS_00010837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010837
Unique NameTCONS_00010837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010837 ID=TCONS_00010837|Name=TCONS_00010837|organism=Clytia hemisphaerica|type=transcript|length=1037bp
AACTCATTAGGTAGTTCAGTTGTACTTCCATAATTCTCCTCGTAGAATTT
TAATGATTCCCATAATAAATCGGATAAGTCGATGAAGTGATTTTTAGTGT
TAGAAGATGAGAAAGATTCTTCTGGAGTTTCAGTTGGTGATTGTGACAAA
GTTGCCGTTGAAATACCAAACAATAGGTTGTTTGAGGAACCTGTAAGTGT
TTTTCCTGTTATATGTTCTCTTGTTTTCATTGGATCTGGCGTTCCGGTGA
TTGTATCAGTAGgatttttagaatcaatttCAATATTATTTCCGGTTGTT
TCAGGTTTTACTGAATATGGAGTCTTATCTTTGGAAGTTGAAGTTGTCTT
AATCTCTGTAAAGTCAGTGGTTTCTGTTAAAATAGTTGGATTAGTTTTGA
CGTTAGAATTCTTAGTTGAAGAGTGAGAATCTACAAAAATTGTTGGTATT
GTCTCAAACGGTATCGAATCTGTAGTAGCTTTCTTAGTGCCCCTAGAATA
AGTatagaaatcttcaaaatcttcAGTGGTTGGCATTTGCGTGGAACTTA
GCTCATTAGGTTGTTCAGTTGTACTTTCATaattctcttcaaagaatttt
aATGATTCCCATAGTAAATCAGATAAGTCGATGAAACCACCCTCAGTATT
AGAAGACGAGAAAGATTCTTCTGGAGTTTCAGTCGAAGCGTCAATGCTTT
TTGTTGGAGATGAGGTCTCGTCAACTTGTGTCCATTTTGAATTCTCATCA
GTCTTTTTGAGATTGTCTGTTGGAGAGATcttcaagtttttgtttgagcc
attatcttttttgtttggagttttGGTTAGAGATGAGGTCTTGTCAACTT
GTGTCCATTTTGAAATGTCGTTTGTCTTTTTGAGATTGTCtgttggagaa
attttcaagtttttgtttgagTCAGTATCTTTAATGTTTGGAGTTTTGGT
GAGAGATGAGGTCTTGTCAACTTGTGTccattttgaaatgtcattcGTCG
TTTGGATGTTGTCATTTGGAGAAATTTCATAGTTGTT
Run BLAST on NCBI

transcript from alignment at sc0000117:557251..558656-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010837 ID=TCONS_00010837|Name=TCONS_00010837|organism=Clytia hemisphaerica|type=transcript|length=1406bp|location=Sequence derived from alignment at sc0000117:557251..558656- (Clytia hemisphaerica)
AACTCATTAGGTAGTTCAGTTGTACTTCCATAATTCTCCTCGTAGAATTT
TAATGATTCCCATAATAAATCGGATAAGTCGATGAAGTGATTTTTAGTGT
TAGAAGATGAGAAAGATTCTTCTGGAGTTTCAGTTGGTGATTGTGACAAA
GTTGCCGTTGAAATACCAAACAATAGGTTGTTTGAGGAACCTGTAAGTGT
TTTTCCTGTTATATGTTCTCTTGTTTTCATTGGATCTGGCGTTCCGGTGA
TTGTATCAGTAGGATTTTTAGAATCAATTTCAATATTATTTCCGGTTGTT
TCAGGTTTTACTGAATATGGAGTCTTATCTTTGGAAGTTGAAGTTGTCTT
AATCTCTGTAAAGTCAGTGGTTTCTGTTAAAATAGTTGGATTAGTTTTGA
CGTTAGAATTCTTAGTTGAAGAGTGAGAATCTACAAAAATTGTTGGTATT
GTCTCAAACGGTATCGAATCTGTAGTAGCTTTCTTAGTGCCCCTAGAATA
AGTATAGAAATCTTCAAAATCTTCAGTGGTTGGCATTTGCGTGGAACTTA
GCTCATTAGGTTGTTCAGTTGTACTTTCATAATTCTCTTCAAAGAATTTT
AATGATTCCCATAGTAAATCAGATAAGTCGATGAAACCACCCTCAGTATT
AGAAGACGAGAAAGATTCTTCTGGAGTTTCAGTCGAAGCGTCAATGCTTT
TTGTTGGAGATGAGGTCTCGTCAACTTGTGTCCATTTTGAATTCTCATCA
GTCTTTTTGAGATTGTCTGTTGGAGAGATCTTCAAGTTTTTGTTTGAGCC
ATTATCTTTTTTGTTTGGAGTTTTGGTTAGAGATGAGGTCTCGTCAACTT
GTGTACGTTTTGAATTGTCATCAGTATTTTTGGTATTTTTTGTTGGAGAG
GTTTTCAAATTTTCATTTGCGTCAGTATCTTTAATGTTTGAAGTTTTTGT
TGGAGATGAGGTCTTGTCAACTTGTGCCCATTTTGAAATTTCATTCGTCG
TTTGGATGTCGTCTGTTGAAGAAATCTCCAAGCTGTTGGGCAAGTCAATA
TCTTTGTTATTTAAAGTTTTGGTTGGAGATGAGGTTTTTGCAATTGGTAC
CCATTTTGAAATATCATCAGTAACTTTGATGCTTTCAGTTGGAGAAATAT
CCAAGTTGTTGGTTGAGTTAATATCTTTTCTGTTTGAAGTTTCTGTAAGA
GATGAGGTCTTGTCAACTTGTGTCCATTTTGAAATGTCGTTTGTCTTTTT
GAGATTGTCTGTTGGAGAAATTTTCAAGTTTTTGTTTGAGTCAGTATCTT
TAATGTTTGGAGTTTTGGTGAGAGATGAGGTCTTGTCAACTTGTGTCCAT
TTTGAAATGTCATTCGTCGTTTGGATGTTGTCATTTGGAGAAATTTCATA
GTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006078XLOC_006078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010837-exon-sc0000117-1575043694:557820..558656TCONS_00010837-exon-sc0000117-1575043694:557820..558656Clytia hemisphaericaexon
TCONS_00010837-exon-sc0000117-1575043694:557251..557450TCONS_00010837-exon-sc0000117-1575043694:557251..557450Clytia hemisphaericaexon
TCONS_00010837-exon-sc0000117-1510915933:557820..558656TCONS_00010837-exon-sc0000117-1510915933:557820..558656Clytia hemisphaericaexon
TCONS_00010837-exon-sc0000117-1510915933:557251..557450TCONS_00010837-exon-sc0000117-1510915933:557251..557450Clytia hemisphaericaexon
TCONS_00010837-exon-sc0000117-1491911889:557820..558656TCONS_00010837-exon-sc0000117-1491911889:557820..558656Clytia hemisphaericaexon
TCONS_00010837-exon-sc0000117-1491911889:557251..557450TCONS_00010837-exon-sc0000117-1491911889:557251..557450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117supercontigsc0000117:557251..558656 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0938755	0	0	0.14202	0.650239	0.132151	0	0	2.81689	2.08375	0.214952	0.556113	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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