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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010803 ID=TCONS_00010803|Name=TCONS_00010803|organism=Clytia hemisphaerica|type=transcript|length=1949bp
CTTAAAACATATGGCTTTATCATTGGATACTTCAGTGTAAAGCAGAAGGA
ATAATGAGGCAATTAACAATCATTGCGCTTTTAATTATTGGAGGCTTAGC
ACTGACTAATGCCGAGGAGGTTACAAAGAGACCAAGGGGAACAGGTGAGC
CGAAAGGTACACGCTTTCCATTGAAAACCGGAAGACCAACAGGAACCCGT
GCACCAAGAGGATCAGGGAAACCAACTGGAACCCGTGGACCACGCCCTAC
TGAAGTAGAAGACCCAAGTCGAGGATCACGAAAACCAACTGGTACCCGTG
GACCAAAAGGATCGGGAAAACCAACCGGAACCCGTGGACCAAAAGGATCA
CGAAAACCAACTGGAACTCGTGGACCACGCCCTACTGAAGTAGAAGACCC
AAGACGAGGCTCCCGAAAACCAACTGGTACCCGTGGACCAAAAGGATCAC
GAAAACCAACTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACCGGA
ACCCGTGGGCCAAAAGTATCACGAAAACCGACTGGTTCCCGTGGGGAAGA
ATAAATACAAACAATATTTCTTGTAAAGTATTTATATAAcgcttttaaat
gaaaattgattttgaactAAAGATGTTGTAATAATATCTAAATTCTTGAG
TAAAAAACATTCACAGCTTCCGAAATACTTGACTCTCATATTTTTTTTTA
GTCTTTTATGACTGTTCATTATTCAGAAAAATCTCTAGAAAGTCAATatt
ccaatttttcattttgcaaCATGTTAAATCATGTTTTTTTACCTCGAAGT
ATGTTTTATAGGTAATATTGAATGAATGGAAACGCTCTCCCCTCCTACTT
AAACCTTTCAGTTTCACTCGCACGTCAATTGTCCACTTTTATTGTCCAGT
TTACCTTGATCACTTCCTCAGTCTTGAATTGCCCAATGTAACGATCTGTT
TTACACGAAAGCACCCAAAGAGACCTGCAATTCGTAGGTAGTTTTTCACT
TTAATCATCAGATAgtatttctttttctcttccCATAAATCATGAGTACC
ATGACCATCTTTGAATTCTAAACAAAGGTGCAGTcaatgctctctaattc
gattttcaagggcaATTGGATTtgcatcgaataagggagtgcATCGAATG
GTAGACCGTTGTTTATGAGGGTTTTTTGTTGACgaccactttcaaaatta
tcgaataatggagcacATAGAAATGTCGGATTAGAGAGCTTTAACTGTAA
TTAATTCTACAAGTCACGTGGTCATCCTTGTGTATTATCGTCTTTATGAT
GCACAATAGTGNGATAGCTTTAACTGTAATTAATTCTACAAGTCACGTGG
TCATCCTTGTGTATTATCGTCTTTATGATGCACAATAGTGCCAAATGGGT
ATTCTCATCATCACCTTAAATAAAGCCCAGAGTATACTGGGACGAGATTG
ACCTCGTTATCTTTCACTCGTTCATCAACGATGaggactttcaatattat
cgaataacaAAGTCAAATAGCAGAACTTCGTCTACAAGTCACATGGGCAT
CACTGCTATGCGTATTATGGGCTTTCCGATGTTTCCTGTTAGTGCCAGAT
AATATTCTCCGGCGTCCAATAATAGCTTAAATAAAGCCTAGAATATACTG
GGGGACGATGTTGACTTGGCTTATCTTTCACTCATTCATCAACGATGGGA
TCAGTTTGCTGTGCCAGATTACGATGAACAGTCCCATAATAACTAATCTT
CCTTTTATACTCCTTCTTCTTCGATTTCTTGTTCTTCCTTTTCAACGTGT
TAATAGAAATGGTAGCTTTAGGGAACAACGGTTTCGTATCTTCCGTGTCT
GCATGGTCGTTCCCGCCACGGTCCTCATTATCATCCTCTGTGTCGGACTC
CATGCTTTCGTGACGCTTTCGTGTCATACAGCAACATCGTTTCAAACAG Run BLAST on NCBI transcript from alignment at sc0000117:429382..432666+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010803 ID=TCONS_00010803|Name=TCONS_00010803|organism=Clytia hemisphaerica|type=transcript|length=3285bp|location=Sequence derived from alignment at sc0000117:429382..432666+ (Clytia hemisphaerica)
CTTAAAACATATGGCTTTATCATTGGATACTTCAGTGTAAAGCAGAAGGA
ATAATGAGGCAATTAACAATCATTGCGCTTTTAATTATTGGAGGCTTAGC
ACTGACTAATGCCGAGGAGGTGAGTTAATTCATGAAACCTTAGAATTTGA
TATATATTGAAtattacacgttgttttttaatataaacatccaaaatttt
tgaagtattttgaagtattaacattttgaatttcaagtctaaaattgttc
ttaacgcgcgttcttattttcaccattttgtgagtgtttttaTCAATCTT
CCTAAGAAATTACGTGTTTTAGAGGCCACGAAGCATtaaatgctcttaac
ttgttctcaatattttttaagtcttgtgttcttatatagttagtttttat
aaaaaacgtgtacacgaACTTTCATGAAAGAATCTCTTAAATTAAACTCT
TAAGTTTTTAGTCTCCAACTCGGTAAATAAAccatacccagctggcacac
aacgtcgtttcaacgttcatctaatgttcacaacgtccatataacgttag
atgaccgttgtaacaacgttgtgtgccagctgggataggGTTTTATACAA
ATCCTGACGTATGAACCAAAATTTTTTGTCCGTAGGTTACAAAGAGACCA
AGGGGAACAGGTGAGCCGAAAGGTACACGCTTTCCATTGAAAACCGGAAG
ACCAACAGGAACCCGTGCACCAAGAGGATCAGGGAAACCAACTGGAACCC
GTGGACCACGCCCTACTGAAGTAGAAGACCCAAGTCGAGGCACATGGAAA
CCAATTGGTACCCGTGggcaaaaaaaaacacgaaaaccGAAAGGAACCCG
TGGACCACGCCCTACTGAAGTAGAAGACCCAAGCCGAGGATCACAAAAAC
CAACTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACTGGAACCCGT
GGACCAAAAGGATCAGAGAAACCAACTGGAACCCGTGGACCACGCCCTAC
TGAAGTAGAAGACCCAAGACGAGGATCACNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGATCACGAAAACCAACTGGAACCCGTGGACCAAAAGGATCACGAAAA
CCAACTGGAACCCGTGGACCACGCCCTACTGAAGTAGAAGACCCAAGACG
AGGATCACGAAAACCAACTGGTACCCGTGGACCAAAAAGATCACGAAAAC
CAACTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACCGGAACCCGT
GGACCAAAAGGATCACGAAAACCAACTGGAACCCTTGGACCACGCCCTAC
TGAAGTAGAAGACCCAAGACAAGGCTCACGAAAACCAACTGGTACCCGTG
GACCAAAAGGATCACGAAAACCAACTGGTACCCGTGGACCAAAAGGATCG
GGAAAACCAACCGGAACCCGTGGACCAAAAGGATCACGAAAACCAACTGG
AACTCGTGGACCACGCCCTACTGAAGTAGAAGACCCAAGACGAGGCTCCC
GAAAACCAACTGGTACCCGTGGACCAAAAGGATCACGAAAACCAACTGGT
ACCCGTGGACCAAAAGGATCACGAAAACCAACCGGAACCCGTGGGCCAAA
AGTATCACGAAAACCGACTGGTTCCCGTGGGGAAGAATAAATACAAACAA
TATTTCTTGTAAAGTATTTATATAAcgcttttaaatgaaaattgattttg
aactAAAGATGTTGTAATAATATCTAAATTCTTGAGTAAAAAACATTCAC
AGCTTCCGAAATACTTGACTCTCATATTTTTTTTTAGTCTTTTATGACTG
TTCATTATTCAGAAAAATCTCTAGAAAGTCAATattccaatttttcattt
tgcaaCATGTTAAATCATGTTTTTTTACCTCGAAGTATGTTTTATAGGTA
ATATTGAATGAATGGAAACGCTCTCCCCTCCTACTTAAACCTTTCAGTTT
CACTCGCACGTCAATTGTCCACTTTTATTGTCCAGTTTACCTTGATCACT
TCCTCAGTCTTGAATTGCCCAATGTAACGATCTGTTTTACACGAAAGCAC
CCAAAGAGACCTGCAATTCGTAGGTAGTTTTTCACTTTAATCATCAGATA
gtatttctttttctcttccCATAAATCATGAGTACCATGACCATCTTTGA
ATTCTAAACAAAGGTGCAGTcaatgctctctaattcgattttcaagggca
ATTGGATTtgcatcgaataagggagtgcATCGAATGGTAGACCGTTGTTT
ATGAGGGTTTTTTGTTGACgaccactttcaaaattatcgaataatggagc
acATAGAAATGTCGGATTAGAGAGCTTTAACTGTAATTAATTCTACAAGT
CACGTGGTCATCCTTGTGTATTATCGTCTTTATGATGCACAATAGTGNGA
TAGCTTTAACTGTAATTAATTCTACAAGTCACGTGGTCATCCTTGTGTAT
TATCGTCTTTATGATGCACAATAGTGCCAAATGGGTATTCTCATCATCAC
CTTAAATAAAGCCCAGAGTATACTGGGACGAGATTGACCTCGTTATCTTT
CACTCGTTCATCAACGATGaggactttcaatattatcgaataacaAAGTC
AAATAGCAGAACTTCGTCTACAAGTCACATGGGCATCACTGCTATGCGTA
TTATGGGCTTTCCGATGTTTCCTGTTAGTGCCAGATAATATTCTCCGGCG
TCCAATAATAGCTTAAATAAAGCCTAGAATATACTGGGGGACGATGTTGA
CTTGGCTTATCTTTCACTCATTCATCAACGATGGGATCAGTTTGCTGTGC
CAGATTACGATGAACAGTCCCATAATAACTAATCTTCCTTTTATACTCCT
TCTTCTTCGATTTCTTGTTCTTCCTTTTCAACGTGTTAATAGAAATGGTA
GCTTTAGGGAACAACGGTTTCGTATCTTCCGTGTCTGCATGGTCGTTCCC
GCCACGGTCCTCATTATCATCCTCTGTGTCGGACTCCATGCTTTCGTGAC
GCTTTCGTGTCATACAGCAACATCGTTTCAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010803-exon-sc0000117-1491911889:429382..429500 | TCONS_00010803-exon-sc0000117-1491911889:429382..429500 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1510915933:429382..429500 | TCONS_00010803-exon-sc0000117-1510915933:429382..429500 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1575043694:429382..429500 | TCONS_00010803-exon-sc0000117-1575043694:429382..429500 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1491911889:430017..430170 | TCONS_00010803-exon-sc0000117-1491911889:430017..430170 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1510915933:430017..430170 | TCONS_00010803-exon-sc0000117-1510915933:430017..430170 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1575043694:430017..430170 | TCONS_00010803-exon-sc0000117-1575043694:430017..430170 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1491911889:430991..432666 | TCONS_00010803-exon-sc0000117-1491911889:430991..432666 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1510915933:430991..432666 | TCONS_00010803-exon-sc0000117-1510915933:430991..432666 | Clytia hemisphaerica | exon |
| TCONS_00010803-exon-sc0000117-1575043694:430991..432666 | TCONS_00010803-exon-sc0000117-1575043694:430991..432666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117 | supercontig | sc0000117:429382..432666 + |
Blast
The following BLAST results are available for this feature:
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